mRNA_Ecto-sp8_S_contig10915.1291.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: A0A6H5KQH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH1_9PHAE) HSP 1 Score: 334 bits (856), Expect = 8.000e-109 Identity = 205/252 (81.35%), Postives = 208/252 (82.54%), Query Frame = 1
Query: 1 MVDDRGSRVSSKGRKRSRVALDGGXXXXXXVDSTYHQHEEDNGYESEGEEGEEEARIRALVFGKGESGLLSSFGEESGAKEATGAGEAEFVGGFYEDLEGDADVDGAGA--DGAAIVIGGGKKSGAPAWIDEDDARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMTADWVKSATAAAAPKSKKVSTERNGAQGRDHSXXXXXXXXXXX----SDAFLRNSAALKGGRGGVLEPGYLNIVR 738
MVDDR SRVSSKGRKRSRVALDGG VDST+ QHEE +GYESEGEEGEEEARIRALVFGKGESGLL SFGEESGAKEATGA EAEFVGGFYED+EGDAD DGAGA DGAAIV GGGKKSGAPAWIDEDDARLKVDVTAKNRLKKLRNNH EADLAGPEFEQRLRSRFSSSNMTADWVKSA XXXXXXXXXXX SDAFLRNSAALKGGRGGVLEPGYLNIVR
Sbjct: 1 MVDDRDSRVSSKGRKRSRVALDGGGGDGGAVDSTHQQHEEKHGYESEGEEGEEEARIRALVFGKGESGLLRSFGEESGAKEATGAREAEFVGGFYEDVEGDADFDGAGAGADGAAIVTGGGKKSGAPAWIDEDDARLKVDVTAKNRLKKLRNNHHEADLAGPEFEQRLRSRFSSSNMTADWVKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDAFLRNSAALKGGRGGVLEPGYLNIVR 252
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: W7T4E2_9STRA (U3 small nucleolar rna-associated protein 18 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4E2_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 2.990e-6 Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 373 PAWIDEDDARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMTA-DWVK 543
PAW DEDD L VDV K+RL+KLR + E D++G ++++RLR+RF+ + A DW +
Sbjct: 156 PAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWAR 213
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: A0A7S2M6B9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2M6B9_9DINO) HSP 1 Score: 57.4 bits (137), Expect = 6.340e-6 Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 352 GGKKSGAPA-WIDEDDARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMTADWVKSA 549
G K+ APA W D DDA L+VD+TA+NR++KLR + E + G E+E+RLR +F + A W + A
Sbjct: 47 GRKRKAAPAAWHDPDDAALEVDLTARNRMQKLRRSEGETTVTGEEYERRLREQFVKLHGHARWAEEA 113
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: A0A7S0GV25_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GV25_9EUKA) HSP 1 Score: 57.4 bits (137), Expect = 6.610e-6 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 361 KSGAPAWIDEDDARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMT--ADWVK 543
K PAW+DE D +KVD++A RL+KLR+ E+++ G E RLR +F N T DW K
Sbjct: 63 KEAKPAWVDEHDEEVKVDISAHTRLRKLRDTETESEITGTELTARLRRQFKKINQTNDLDWAK 125
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: A0A1D1XH23_9ARAE (U3 small nucleolar RNA-associated protein 18 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XH23_9ARAE) HSP 1 Score: 57.0 bits (136), Expect = 9.520e-6 Identity = 48/141 (34.04%), Postives = 71/141 (50.35%), Query Frame = 1
Query: 148 EGEEEARIRALVFGKGESGLLSSFGEESGAKEATGAGEAEFVGG-----FYEDLEG-----DADVDGAGADGAAIVIGGGKKSGAPAWIDEDDARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMTADWV 540
E EEE R+ +FG L FG E G +A E +GG FY D G +AD+ G + G ++ GG+ P W D+++ +L+VDVT NRL+KLR E+ ++G ++ RLR++ N DW
Sbjct: 71 EREEEERLEKALFGS--LYCLPEFGGEGGDGDAR-----EVLGGPSTPQFYIDKSGGMVVYEADL-GTQSVGRRELVRGGRN---PVWFDDEEDKLRVDVTKVNRLRKLREKADESVISGSDYVSRLRAQHVKLNPGTDWA 200
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: A0A165ZDW3_EXIGL (Uncharacterized protein (Fragment) n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165ZDW3_EXIGL) HSP 1 Score: 56.6 bits (135), Expect = 1.090e-5 Identity = 47/137 (34.31%), Postives = 68/137 (49.64%), Query Frame = 1
Query: 154 EEEARIRALVFGKGESGLLSSFGEESGAKEATGAGEAEFVGGFYEDLEGDA--DVDGAGADGAAIVIG---GGKKSGAPAWIDEDDARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMTADWVKSA 549
+EE + A +FG G L AK A E++ ++ L DA VD AG +G A V G K AW+DEDD L+V++ RL+KLR+ E ++AG ++E RLR ++ N T W+ A
Sbjct: 28 DEELALEAALFG----GALPK------AKSKRRAEESDDDAAEFDTLNDDALFFVDDAGGEGDAPVPAPAPGRKARKKAAWVDEDDEELRVNIAENKRLRKLRDAEGEEEVAGADYESRLRRQYEKLNPTPAWLSQA 154
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: E1ZKN0_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZKN0_CHLVA) HSP 1 Score: 56.6 bits (135), Expect = 1.240e-5 Identity = 38/122 (31.15%), Postives = 54/122 (44.26%), Query Frame = 1
Query: 373 PAWIDEDDARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMTADWVKSATAAAAPKSKKVSTERNGAQGRDHSXXXXXXXXXXXSDAFLRNSAALKGGRGGVLEPGYLNIVR 738
PAW D DA L+V+V A+N+L+KLR E +L G ++EQRLR + + N W KK S +R A + ++ L+ + L RG L P L R
Sbjct: 107 PAWEDPQDAHLRVNVAARNQLRKLRQAEDEVELTGQQYEQRLRQQHNKLNPRTAWASV---------KKASKQRQRAAEHGDAGSDTEDEAAEAAERLLQRAGGLLA-RGAALPPSMLETTR 218
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: L1IN09_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IN09_GUITC) HSP 1 Score: 56.2 bits (134), Expect = 1.510e-5 Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query: 343 VIGGGKKSGAPAWIDEDDARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMTADWV 540
++ G K PAW DEDD + VD+ +K+RLKKLR + +E + G E+ QRLRS+ N W
Sbjct: 1 MVSSGSKD-VPAWQDEDDKNVSVDIKSKDRLKKLRKSEEEEAIDGEEYAQRLRSQVLKVNNNVSWA 65
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: A0A7J6L0D5_PEROL (U3 snoRNP protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6L0D5_PEROL) HSP 1 Score: 56.6 bits (135), Expect = 1.520e-5 Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 373 PAWIDEDD--ARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMTADWV 540
PAW+DEDD + +VD+T++NRLKKLR++ E ++ E+E RLR RF+ + DW
Sbjct: 23 PAWVDEDDDASNAEVDLTSRNRLKKLRSSRDEVKVSVREYEARLRDRFTQMSGRQDWA 80
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Match: A0A4P9XP54_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XP54_9FUNG) HSP 1 Score: 55.5 bits (132), Expect = 2.770e-5 Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 376 AWIDEDDARLKVDVTAKNRLKKLRNNHQEADLAGPEFEQRLRSRFSSSNMTADWVKSAT 552
AW DEDD +L+V +T +NRL+KLR +E +AG E+++RLR +F + W +AT
Sbjct: 10 AWEDEDDVQLRVSLTDRNRLRKLRQTEEETAVAGDEYQRRLRQQFQRVHPKPKWALTAT 68 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10915.1291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10915.1291.1 >prot_Ecto-sp8_S_contig10915.1291.1 ID=prot_Ecto-sp8_S_contig10915.1291.1|Name=mRNA_Ecto-sp8_S_contig10915.1291.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=247bp MVDDRGSRVSSKGRKRSRVALDGGGGGGGTVDSTYHQHEEDNGYESEGEEback to top mRNA from alignment at Ecto-sp8_S_contig10915:2939..6535+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10915.1291.1 ID=mRNA_Ecto-sp8_S_contig10915.1291.1|Name=mRNA_Ecto-sp8_S_contig10915.1291.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3597bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10915:2939..6535+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10915:2939..6535+ >mRNA_Ecto-sp8_S_contig10915.1291.1 ID=mRNA_Ecto-sp8_S_contig10915.1291.1|Name=mRNA_Ecto-sp8_S_contig10915.1291.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10915:2939..6535+ (Ectocarpus species8 EcLAC_412)back to top |