mRNA_Ecto-sp8_S_contig10907.1281.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10907.1281.1
Unique NamemRNA_Ecto-sp8_S_contig10907.1281.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10907.1281.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.930e-33
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 3 
Query:    3 VTNPYETDMNGGCLDGKPTPCLADGGLSVTVDGEKGMDDSALLHPARGEILPGGIIEVSAANLPVECWEFGGDAIWARHYADMTAQQR 266
            VTNPY TD+N GC DG PTPCLA+GGLSVTVDGEK +    L+HP RGEILPGGI EVSA NLPV+CW+FGG  IWARHY  + A+++
Sbjct:  471 VTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNV---GLIHPIRGEILPGGI-EVSADNLPVQCWQFGGHKIWARHYEAILARRK 554
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BLAST of mRNA_Ecto-sp8_S_contig10907.1281.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 5.430e-33
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 3 
Query:    3 VTNPYETDMNGGCLDGKPTPCLADGGLSVTVDGEKGMDDSALLHPARGEILPGGIIEVSAANLPVECWEFGGDAIWARHYADMTAQQRR 269
            VT PY+TD  GGC DG P PCLA+GGLSV VDGEK  DDS LLH  R E LPGGI +VSAANLPV+CW+FGGD I ARHYA+   + RR
Sbjct:  122 VTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLHTIRDETLPGGI-QVSAANLPVQCWQFGGDKISARHYANTIMEGRR 209
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BLAST of mRNA_Ecto-sp8_S_contig10907.1281.1 vs. uniprot
Match: D7G4E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E8_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 6.220e-18
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 3 
Query:    3 VTNPYETDMNGGCLDGKPTPCLADGGLSVTVDGEKGMDDSALLHPAR 143
            VTNPY+TD+NGGCLDG  TPCLA+GGLSVTV+GEK M DS LLHP R
Sbjct:   77 VTNPYDTDINGGCLDGMSTPCLANGGLSVTVNGEKQMVDSPLLHPIR 123
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BLAST of mRNA_Ecto-sp8_S_contig10907.1281.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 6.530e-14
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 3 
Query:    3 VTNPYETDMNGGCLDGKPTPCLADGGLSVTVDGEKGMDDSALLHPARGEILPGGIIEVSAANLPVECWEFGGDAIWARHYADMTAQQRRM 272
            V NPY T + GGC +G  +PCLA+GGL + VDG++ +D+  LL  +R   +  G + +SA+NLPVEC +FGG  IWAR Y D+   +R++
Sbjct:   82 VENPY-TIVTGGCPEGV-SPCLANGGLRIIVDGQE-VDE--LLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQL 166
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BLAST of mRNA_Ecto-sp8_S_contig10907.1281.1 vs. uniprot
Match: D7FSG9_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.870e-10
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 3 
Query:   27 MNGGCLDGKPTPCLADGGLSVTVDGEKGMDDSALLHP 137
            M+G C +G PTPCLA+GGLSVTVDGE+  DDS LLHP
Sbjct:    1 MSGDCPNGMPTPCLANGGLSVTVDGEETADDSPLLHP 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10907.1281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JNZ2_9PHAE4.930e-3369.32VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JP35_9PHAE5.430e-3368.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G4E8_ECTSI6.220e-1878.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMW2_ECTSI6.530e-1446.67Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FSG9_ECTSI1.870e-1072.97N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10907contigEcto-sp8_S_contig10907:2326..2882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size280
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143180.306278-UTR-Ecto-sp8_S_contig10907:2325..23511681143180.306278-UTR-Ecto-sp8_S_contig10907:2325..2351Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10907 2326..2351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143180.3153155-CDS-Ecto-sp8_S_contig10907:2351..24671681143180.3153155-CDS-Ecto-sp8_S_contig10907:2351..2467Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10907 2352..2467 +
1681143180.323903-CDS-Ecto-sp8_S_contig10907:2746..28821681143180.323903-CDS-Ecto-sp8_S_contig10907:2746..2882Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10907 2747..2882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10907.1281.1prot_Ecto-sp8_S_contig10907.1281.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10907 2352..2882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10907.1281.1

>prot_Ecto-sp8_S_contig10907.1281.1 ID=prot_Ecto-sp8_S_contig10907.1281.1|Name=mRNA_Ecto-sp8_S_contig10907.1281.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=84bp
MNGGCLDGKPTPCLADGGLSVTVDGEKGMDDSALLHPARGEILPGGIIEV
SAANLPVECWEFGGDAIWARHYADMTAQQRRMET
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mRNA from alignment at Ecto-sp8_S_contig10907:2326..2882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10907.1281.1 ID=mRNA_Ecto-sp8_S_contig10907.1281.1|Name=mRNA_Ecto-sp8_S_contig10907.1281.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=557bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10907:2326..2882+ (Ectocarpus species8 EcLAC_412)
AGGTGACGAACCCGTATGAGACGGATATGAATGGCGGCTGCCTCGACGGA
AAGCCGACGCCGTGCCTGGCCGACGGCGGACTGAGCGTCACCGTGGATGG
CGAGAAGGGCATGGATGACTCTGCCCTGCTCCACCCCGCTCGGTAGGGTC
AGCATCACCTCAAGCCATTTATATCATCGTAGCAGCGCCTGTGTCCCGAC
AGCCGGCTCTTTGGTCGGACACTACCGTGGCTCTCAGTACCTTCCGATAG
AAATCCATATCTTTCATAGAAATCCATATCTTTCATGACATGTACTCCTG
AACCACTTGCATCAGACAGACTTCTCCTATCTCAACCTAACTGCTCAGAC
GCCGCCAGTCACCAGCACACCAACCCGCTTGCACCCAGTGTTACCAACCC
AATGTTCTGTGCGTGGCCCAGGGGCGAGATCCTACCTGGGGGTATCATCG
AAGTTTCCGCTGCCAATCTCCCGGTAGAGTGCTGGGAGTTCGGCGGGGAC
GCGATTTGGGCTCGCCACTACGCGGACATGACGGCGCAGCAACGGCGCAT
GGAAACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10907:2326..2882+

>mRNA_Ecto-sp8_S_contig10907.1281.1 ID=mRNA_Ecto-sp8_S_contig10907.1281.1|Name=mRNA_Ecto-sp8_S_contig10907.1281.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10907:2326..2882+ (Ectocarpus species8 EcLAC_412)
ATGAATGGCGGCTGCCTCGACGGAAAGCCGACGCCGTGCCTGGCCGACGG
CGGACTGAGCGTCACCGTGGATGGCGAGAAGGGCATGGATGACTCTGCCC
TGCTCCACCCCGCTCGGGGCGAGATCCTACCTGGGGGTATCATCGAAGTT
TCCGCTGCCAATCTCCCGGTAGAGTGCTGGGAGTTCGGCGGGGACGCGAT
TTGGGCTCGCCACTACGCGGACATGACGGCGCAGCAACGGCGCATGGAAA
CG
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