mRNA_Ecto-sp8_S_contig10899.1271.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI) HSP 1 Score: 233 bits (594), Expect = 9.280e-69 Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS 351
TEMVYKQHRFNLQREETEGFAKLLVLLAGVRD GNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVG+FNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS
Sbjct: 243 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDSGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGRFNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS 359
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7S0NH85_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NH85_MICPS) HSP 1 Score: 100 bits (248), Expect = 3.180e-23 Identity = 56/117 (47.86%), Postives = 75/117 (64.10%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS 351
T +VY Q++FNL REE+EG++KL+ LA G +G GNA A + +++ LIGYFDLDPNRALDL LDA E P G + L+G F K + VLGFK ++ S A + A R+
Sbjct: 153 TRLVYTQNKFNLLREESEGYSKLITALAEF--GRSGDGNAAA-AIRSVQSLIGYFDLDPNRALDLVLDAYEHAPTQDGFMELLGLFRKGAHAQVLGFKFQNHAKASEAAANAVANRA 266
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: C1EC29_MICCC (THO complex subunit 2 n=2 Tax=Micromonas TaxID=38832 RepID=C1EC29_MICCC) HSP 1 Score: 99.8 bits (247), Expect = 5.320e-22 Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS 351
T +VY Q++FNL REE+EG++KL+ LA G+G A + +++ LIGYFDLDPNRALDL LDA E P G + L+G F K + VLGFK ++ S A + AA R+
Sbjct: 148 TRLVYTQNKFNLLREESEGYSKLITALAEFGRSGDG---VAAAAVRSVQSLIGYFDLDPNRALDLVLDAYEHAPTQDGFMELLGLFRKGAHAQVLGFKFQNHAKASEAAANAAANRA 261
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7R9T714_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9T714_MICPS) HSP 1 Score: 93.2 bits (230), Expect = 7.410e-21 Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
T +VY Q++FNL REE+EG++KL+V LA + G+G A A + + + LIGYFDLDPNR LDL +A E PAN G L+ F ++ VLGFK + + A
Sbjct: 134 TRLVYTQNKFNLLREESEGYSKLVVALAAFGERGSGDDAAVAGAIRSTQSLIGYFDLDPNRVLDLVFEAYERWPANDGFAELLRLFRTENFAQVLGFKFQCHAKAAAA 241
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7S2R5A3_9STRA (THO complex subunit 2 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5A3_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 3.030e-20 Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESE-ENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
T+ VY+Q +FNL REETEG+AK +VL+ + ES NM LIGYFDLDPNR L L LDA E D N ++ +F + +P +LGFKL + +P A
Sbjct: 156 TDQVYRQQKFNLLREETEGYAKAIVLIGSITA-------VDVESSISNMLSLIGYFDLDPNRILSLVLDAFEKDLGNVAFFPVIARFKRAFLPHILGFKLQFFNSPDAA 257
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7S3X6B1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X6B1_EMIHU) HSP 1 Score: 92.0 bits (227), Expect = 1.830e-19 Identity = 53/113 (46.90%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLLA----GVRDGGNGRG-NAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
T +Y Q ++NL RE +EG++KL+ LA G RDG + RG AE N++ LIGYFDLDPNR LDL L+ALE+ P+ LV FN +P VLGFK Y+ + A
Sbjct: 158 TRALYTQQKYNLLREGSEGYSKLVTELAELPAGPRDGTSTRGCTRAAEVVANVQSLIGYFDLDPNRVLDLVLEALEAVPSRASHRSLVELFNPQYLPHVLGFKFQFYKGEAEA 270
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A8K1FI86_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI86_PYTOL) HSP 1 Score: 92.0 bits (227), Expect = 2.670e-19 Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYR 309
T+ Y Q +FNL REE+EGFAK+L LL G +G A S+ ++ LIGYFDLDPNR LDL LDA E P N L+ F ++S+P VLGFK Y+
Sbjct: 157 TKTYYTQVKFNLLREESEGFAKVLSLL----HTGISKGQLAA-SKTDLMSLIGYFDLDPNRVLDLVLDAYEMQPQNDAYAELLELFKRESIPHVLGFKFQFYK 254
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A2D4C734_PYTIN (THO complex subunit 2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C734_PYTIN) HSP 1 Score: 92.0 bits (227), Expect = 2.670e-19 Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLL-AGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
T+ Y Q +FNL REE+EGFAK+L LL GV A S+ ++ LIG+FDLD NR LDL LDA E P N G L L+ F +DS+P VLGFK Y+ A
Sbjct: 204 TKTYYTQVKFNLLREESEGFAKVLSLLHTGVTT------EQLAASKTDLMALIGFFDLDANRVLDLVLDAYEMHPHNDGYLELLELFKRDSIPHVLGFKFQFYKRDDAA 306
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7S0NSD8_9EUKA (THO complex subunit 2 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NSD8_9EUKA) HSP 1 Score: 90.5 bits (223), Expect = 9.180e-19 Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAG----AESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHY 306
T +Y Q ++NL REE+EG++KL+ L+ + G G AE N++ LIGYFDLDPNR LDL LDALE+ P+ LV FN + +P +LGFK + Y
Sbjct: 169 TRALYTQQKYNLLREESEGYSKLMTELSELPAAGRATSTRGCQQAAEVIANIQSLIGYFDLDPNRVLDLVLDALEAVPSRVQYRPLVALFNPNKIPHMLGFKFSFY 274
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A250WYS1_9CHLO (THO complex subunit 2 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WYS1_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 1.260e-18 Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
T+ Y Q++FNL RE+TEG+AKL+ L V DG EE ++ LIGYFDLDPNR LDL LDA E P N ++LV F ++V +LGFK ++ S A
Sbjct: 110 TKTAYTQNKFNLLREDTEGYAKLVTCLNHVGDGSLTEETVPLLFEE-IQALIGYFDLDPNRVLDLVLDAAEHQPHNDAYIKLVPMFKAEAVVQLLGFKFQGFQEDSPA 216 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10899.1271.1 >prot_Ecto-sp8_S_contig10899.1271.1 ID=prot_Ecto-sp8_S_contig10899.1271.1|Name=mRNA_Ecto-sp8_S_contig10899.1271.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=115bp MVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIback to top mRNA from alignment at Ecto-sp8_S_contig10899:1206..2256+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10899.1271.1 ID=mRNA_Ecto-sp8_S_contig10899.1271.1|Name=mRNA_Ecto-sp8_S_contig10899.1271.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1051bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10899:1206..2256+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10899:1206..2256+ >mRNA_Ecto-sp8_S_contig10899.1271.1 ID=mRNA_Ecto-sp8_S_contig10899.1271.1|Name=mRNA_Ecto-sp8_S_contig10899.1271.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10899:1206..2256+ (Ectocarpus species8 EcLAC_412)back to top |