mRNA_Ecto-sp8_S_contig10899.1271.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10899.1271.1
Unique NamemRNA_Ecto-sp8_S_contig10899.1271.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 9.280e-69
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS 351
            TEMVYKQHRFNLQREETEGFAKLLVLLAGVRD GNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVG+FNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS
Sbjct:  243 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDSGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGRFNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS 359          
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7S0NH85_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NH85_MICPS)

HSP 1 Score: 100 bits (248), Expect = 3.180e-23
Identity = 56/117 (47.86%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS 351
            T +VY Q++FNL REE+EG++KL+  LA    G +G GNA A +  +++ LIGYFDLDPNRALDL LDA E  P   G + L+G F K +   VLGFK  ++   S A  +  A R+
Sbjct:  153 TRLVYTQNKFNLLREESEGYSKLITALAEF--GRSGDGNAAA-AIRSVQSLIGYFDLDPNRALDLVLDAYEHAPTQDGFMELLGLFRKGAHAQVLGFKFQNHAKASEAAANAVANRA 266          
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: C1EC29_MICCC (THO complex subunit 2 n=2 Tax=Micromonas TaxID=38832 RepID=C1EC29_MICCC)

HSP 1 Score: 99.8 bits (247), Expect = 5.320e-22
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRS 351
            T +VY Q++FNL REE+EG++KL+  LA     G+G     A +  +++ LIGYFDLDPNRALDL LDA E  P   G + L+G F K +   VLGFK  ++   S A  + AA R+
Sbjct:  148 TRLVYTQNKFNLLREESEGYSKLITALAEFGRSGDG---VAAAAVRSVQSLIGYFDLDPNRALDLVLDAYEHAPTQDGFMELLGLFRKGAHAQVLGFKFQNHAKASEAAANAAANRA 261          
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7R9T714_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9T714_MICPS)

HSP 1 Score: 93.2 bits (230), Expect = 7.410e-21
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
            T +VY Q++FNL REE+EG++KL+V LA   + G+G   A A +  + + LIGYFDLDPNR LDL  +A E  PAN G   L+  F  ++   VLGFK   +   + A
Sbjct:  134 TRLVYTQNKFNLLREESEGYSKLVVALAAFGERGSGDDAAVAGAIRSTQSLIGYFDLDPNRVLDLVFEAYERWPANDGFAELLRLFRTENFAQVLGFKFQCHAKAAAA 241          
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7S2R5A3_9STRA (THO complex subunit 2 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5A3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.030e-20
Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESE-ENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
            T+ VY+Q +FNL REETEG+AK +VL+  +            ES   NM  LIGYFDLDPNR L L LDA E D  N     ++ +F +  +P +LGFKL  + +P  A
Sbjct:  156 TDQVYRQQKFNLLREETEGYAKAIVLIGSITA-------VDVESSISNMLSLIGYFDLDPNRILSLVLDAFEKDLGNVAFFPVIARFKRAFLPHILGFKLQFFNSPDAA 257          
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7S3X6B1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X6B1_EMIHU)

HSP 1 Score: 92.0 bits (227), Expect = 1.830e-19
Identity = 53/113 (46.90%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLLA----GVRDGGNGRG-NAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
            T  +Y Q ++NL RE +EG++KL+  LA    G RDG + RG    AE   N++ LIGYFDLDPNR LDL L+ALE+ P+      LV  FN   +P VLGFK   Y+  + A
Sbjct:  158 TRALYTQQKYNLLREGSEGYSKLVTELAELPAGPRDGTSTRGCTRAAEVVANVQSLIGYFDLDPNRVLDLVLEALEAVPSRASHRSLVELFNPQYLPHVLGFKFQFYKGEAEA 270          
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A8K1FI86_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI86_PYTOL)

HSP 1 Score: 92.0 bits (227), Expect = 2.670e-19
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYR 309
            T+  Y Q +FNL REE+EGFAK+L LL      G  +G   A S+ ++  LIGYFDLDPNR LDL LDA E  P N     L+  F ++S+P VLGFK   Y+
Sbjct:  157 TKTYYTQVKFNLLREESEGFAKVLSLL----HTGISKGQLAA-SKTDLMSLIGYFDLDPNRVLDLVLDAYEMQPQNDAYAELLELFKRESIPHVLGFKFQFYK 254          
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A2D4C734_PYTIN (THO complex subunit 2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C734_PYTIN)

HSP 1 Score: 92.0 bits (227), Expect = 2.670e-19
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLL-AGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
            T+  Y Q +FNL REE+EGFAK+L LL  GV           A S+ ++  LIG+FDLD NR LDL LDA E  P N G L L+  F +DS+P VLGFK   Y+    A
Sbjct:  204 TKTYYTQVKFNLLREESEGFAKVLSLLHTGVTT------EQLAASKTDLMALIGFFDLDANRVLDLVLDAYEMHPHNDGYLELLELFKRDSIPHVLGFKFQFYKRDDAA 306          
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A7S0NSD8_9EUKA (THO complex subunit 2 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NSD8_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 9.180e-19
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAG----AESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHY 306
            T  +Y Q ++NL REE+EG++KL+  L+ +   G      G    AE   N++ LIGYFDLDPNR LDL LDALE+ P+      LV  FN + +P +LGFK + Y
Sbjct:  169 TRALYTQQKYNLLREESEGYSKLMTELSELPAAGRATSTRGCQQAAEVIANIQSLIGYFDLDPNRVLDLVLDALEAVPSRVQYRPLVALFNPNKIPHMLGFKFSFY 274          
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Match: A0A250WYS1_9CHLO (THO complex subunit 2 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WYS1_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 1.260e-18
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 TEMVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLIGYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHYRNPSVA 324
            T+  Y Q++FNL RE+TEG+AKL+  L  V DG           EE ++ LIGYFDLDPNR LDL LDA E  P N   ++LV  F  ++V  +LGFK   ++  S A
Sbjct:  110 TKTAYTQNKFNLLREDTEGYAKLVTCLNHVGDGSLTEETVPLLFEE-IQALIGYFDLDPNRVLDLVLDAAEHQPHNDAYIKLVPMFKAEAVVQLLGFKFQGFQEDSPA 216          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10899.1271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD24_ECTSI9.280e-6998.29THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S0NH85_MICPS3.180e-2347.86Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
C1EC29_MICCC5.320e-2246.15THO complex subunit 2 n=2 Tax=Micromonas TaxID=388... [more]
A0A7R9T714_MICPS7.410e-2145.37Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S2R5A3_9STRA3.030e-2044.95THO complex subunit 2 n=1 Tax=Rhizochromulina mari... [more]
A0A7S3X6B1_EMIHU1.830e-1946.90Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A8K1FI86_PYTOL2.670e-1949.51Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C734_PYTIN2.670e-1948.62THO complex subunit 2 n=1 Tax=Pythium insidiosum T... [more]
A0A7S0NSD8_9EUKA9.180e-1945.28THO complex subunit 2 n=1 Tax=Calcidiscus leptopor... [more]
A0A250WYS1_9CHLO1.260e-1846.30THO complex subunit 2 n=1 Tax=Chlamydomonas eustig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10899contigEcto-sp8_S_contig10899:1206..2256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score229.6
Seed ortholog evalue7.6e-58
Seed eggNOG ortholog2880.D8LD24
Preferred nameZC3H13
Model size351
KEGG koko:K12837,ko:K12879
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016071,GO:0016556,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0034708,GO:0036396,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045293,GO:0046483,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:2000036
Exons2
EggNOG free text desc.mRNA transport
EggNOG OGsKOG1874@1,KOG1874@2759
Cds size345
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143179.4237885-UTR-Ecto-sp8_S_contig10899:1205..12111681143179.4237885-UTR-Ecto-sp8_S_contig10899:1205..1211Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10899 1206..1211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143179.4330695-CDS-Ecto-sp8_S_contig10899:1211..13871681143179.4330695-CDS-Ecto-sp8_S_contig10899:1211..1387Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10899 1212..1387 +
1681143179.4403744-CDS-Ecto-sp8_S_contig10899:2087..22561681143179.4403744-CDS-Ecto-sp8_S_contig10899:2087..2256Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10899 2088..2256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10899.1271.1prot_Ecto-sp8_S_contig10899.1271.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10899 1212..2256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10899.1271.1

>prot_Ecto-sp8_S_contig10899.1271.1 ID=prot_Ecto-sp8_S_contig10899.1271.1|Name=mRNA_Ecto-sp8_S_contig10899.1271.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=115bp
MVYKQHRFNLQREETEGFAKLLVLLAGVRDGGNGRGNAGAESEENMRRLI
GYFDLDPNRALDLTLDALESDPANRGLLRLVGKFNKDSVPPVLGFKLAHY
RNPSVAKYHRAAMRS
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mRNA from alignment at Ecto-sp8_S_contig10899:1206..2256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10899.1271.1 ID=mRNA_Ecto-sp8_S_contig10899.1271.1|Name=mRNA_Ecto-sp8_S_contig10899.1271.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1051bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10899:1206..2256+ (Ectocarpus species8 EcLAC_412)
ACGGAAATGGTGTACAAGCAACACCGCTTCAACCTGCAGCGAGAGGAGAC GGAGGGGTTCGCCAAGCTGCTGGTCCTCCTGGCGGGGGTTCGAGACGGTG GCAACGGGAGGGGCAACGCCGGCGCGGAGTCAGAGGAGAACATGCGACGA CTTATCGGATATTTCGACCTGGATCCAAACAGGTGGGCATGGCTACGGCC CTGGCAGAGTACCTACAGGATGTGTTTACCCTCCGGACCCTTTGTTTCTG TCTCTTTTCTTTTTTTTTTGTTTCGAAAACGCAATGAATTCATGCCTTAT CCACGGGTCAGAGCACGGGATAAGTTAGCATTGAGTTTTTCTCACGACGA TGTAAGCCTAGCAATGATCGCGGCTGGTGCGGCCAATGCGGCCAATAACA TATGAATGTGCCGGTTTGTAAAGGACGTACATAGCTTTGAAGGGGAAGCA CTGCTGCCGTGGCGCCAGCAATAAAATCAGGAAACAGACAGACACACGCA AGTATTTTGTGTTTTCAACCGCACGGAGACTGACGTATTGTCATTGGTCA GCCGGCTAGGTGGTCGATGTTATTATCATTGAACACACACACAACACACA TCCCAATGACTGGGCTCTGATTAATACTAGATTAATACTAGTCAGACCCA TCTACTGTAACTGCGTAGAACGCCAGAGCGCTAACCTATGCTCACACCAG CACCAACTAGAAATTTCCGTTCGTGGTTGGACCGCCATGGATGTTACAGT GAGGGCACGGGGAGTGCAGGTATTGGAACGGGTTTTCATGATGTGCAGGC AACAGCAACGTGGCTATGCGCGTTCACATACCGATACGCAAAACATTCTC TTCTTTCCCTTGTGTATACATACCACGATCAGGGCTCTTGACCTGACACT GGATGCACTGGAGTCGGACCCGGCAAACCGCGGTCTGCTGCGGCTGGTGG GAAAGTTCAACAAGGACAGCGTGCCCCCCGTCCTTGGCTTCAAGCTGGCC CACTACCGGAACCCATCTGTGGCGAAGTACCACAGGGCCGCCATGCGGAG C
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10899:1206..2256+

>mRNA_Ecto-sp8_S_contig10899.1271.1 ID=mRNA_Ecto-sp8_S_contig10899.1271.1|Name=mRNA_Ecto-sp8_S_contig10899.1271.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10899:1206..2256+ (Ectocarpus species8 EcLAC_412)
ATGGTGTACAAGCAACACCGCTTCAACCTGCAGCGAGAGGAGACGGAGGG
GTTCGCCAAGCTGCTGGTCCTCCTGGCGGGGGTTCGAGACGGTGGCAACG
GGAGGGGCAACGCCGGCGCGGAGTCAGAGGAGAACATGCGACGACTTATC
GGATATTTCGACCTGGATCCAAACAGGGCTCTTGACCTGACACTGGATGC
ACTGGAGTCGGACCCGGCAAACCGCGGTCTGCTGCGGCTGGTGGGAAAGT
TCAACAAGGACAGCGTGCCCCCCGTCCTTGGCTTCAAGCTGGCCCACTAC
CGGAACCCATCTGTGGCGAAGTACCACAGGGCCGCCATGCGGAGC
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