mRNA_Ecto-sp8_S_contig10896.1270.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10896.1270.1
Unique NamemRNA_Ecto-sp8_S_contig10896.1270.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: D8LQE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE5_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 2.320e-92
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 1
Query:    4 CRPLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDVWGR 423
             +PLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLA+ALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGG+VGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDVWGR
Sbjct:  284 AKPLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLANALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGRVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDVWGR 423          
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: W7TRZ0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ0_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.050e-31
Identity = 66/143 (46.15%), Postives = 91/143 (63.64%), Query Frame = 1
Query:    4 CRPLNP-----VQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDVW 417
             RPLN       +    GQ +++QPGC+HANMDLFKWA++L P  PS+ +   LELAV+CR++DMRASPYDL+    +P   VG+G G   G     +D +P++IETEEGRKEYQ  Q  L+ ++ P+R  L+   D    +W
Sbjct:   53 ARPLNVWGQDLSEARSHGQLAHEQPGCLHANMDLFKWAVKLGPYAPSDLVRQTLELAVACRVVDMRASPYDLSPL-VLP---VGKGRGMPSGY---RFDASPIKIETEEGRKEYQAEQQALFDKAQPLRTRLLNVYDLFFRMW 188          
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: UPI0018F14E5F (3-methyladenine DNA glycosylase n=1 Tax=Qaidamihabitans albus TaxID=2795733 RepID=UPI0018F14E5F)

HSP 1 Score: 121 bits (303), Expect = 7.020e-31
Identity = 66/137 (48.18%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    4 CRPLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDV 414
             RPLN +Q  R  QR  +QPGC+HANMDL+KWA +L PL+P+E L D  ELA   R+LDMRASPYDL++ G                        +PVRIET EGR EY +AQAE   R+ P+R  L++H   LL V
Sbjct:  176 ARPLNRLQPTRQTQRDFEQPGCLHANMDLYKWAYKLGPLVPAELLGDCFELAAEVRLLDMRASPYDLSSFGH-----------------------SPVRIETAEGRAEYARAQAEFAHRAAPLRNQLVQHCRSLLGV 289          
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: K8YX90_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YX90_NANGC)

HSP 1 Score: 119 bits (299), Expect = 4.910e-30
Identity = 67/143 (46.85%), Postives = 91/143 (63.64%), Query Frame = 1
Query:    4 CRPLNP-----VQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDVW 417
             RPLN       +    GQ +++QPGC+HANMDLFKWA++L P  PS+ L   LELAV+CR++DMRASPYDL+    +P   VG+G G   G     +D +P++IETEEGRKEYQ  Q  L+ ++ P+R  L+   D    +W
Sbjct:  175 ARPLNVWGQDLSEARSHGQLAHEQPGCLHANMDLFKWAVKLGPYAPSDLLRQTLELAVACRVVDMRASPYDLSPL-VLP---VGKGRGLPSGY---RFDASPIKIETEEGRKEYQAEQQALFDKAQPLRTRLLNVYDLFFRMW 310          
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: UPI000A9BE976 (3-methyladenine DNA glycosylase n=1 Tax=Nocardia harenae TaxID=358707 RepID=UPI000A9BE976)

HSP 1 Score: 119 bits (297), Expect = 1.440e-29
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 1
Query:   10 PLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDV 414
            P N + L R  Q + +QPGC+HA MDL+KWA +L PLLPS  + DA ELA + R LDMRASPYDL+A+G                        TPV IET  GR +Y +AQA+L +R++P+R++L+ H +RLL+V
Sbjct:  213 PRNELPLTRADQVAREQPGCLHAGMDLYKWAFKLTPLLPSPLVLDAFELACAARELDMRASPYDLSAYGY-----------------------TPVPIETPSGRADYVRAQADLARRALPLRQALLEHCERLLEV 324          
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: A0A2T0LPF7_9PSEU (Uncharacterized protein n=1 Tax=Prauserella shujinwangii TaxID=1453103 RepID=A0A2T0LPF7_9PSEU)

HSP 1 Score: 116 bits (290), Expect = 6.690e-29
Identity = 65/139 (46.76%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    4 CRPLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDVWG 420
             RPLN ++  R  QR  +QPGC+HANMDL+KWA +L P +P+E + D  ELA   R+LDMRASPYDL+A G                        +PVRIET EGR EY +AQA   +R+ P+R  L+R    LLDV G
Sbjct:  179 ARPLNRLRPTRETQRDFEQPGCLHANMDLYKWAYKLGPFVPAELVGDCFELAADIRLLDMRASPYDLSALGH-----------------------SPVRIETPEGRAEYARAQAAFARRAAPLRDRLLRLCRDLLDVTG 294          
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: A0A0M0J9Y2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J9Y2_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 1.330e-28
Identity = 66/138 (47.83%), Postives = 87/138 (63.04%), Query Frame = 1
Query:   10 PLNPVQL--ERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDVW 417
            PLN +     R  Q   +QPGCVHA+MDLF+++L+LWP LP+E LAD LELA++ R+LDMRASPYDL+             GG  G     ++D +PVRIET EGRK YQ+ Q+ L   + P+R  L+R  D  + VW
Sbjct:  190 PLNTISPTPSRATQAQLEQPGCVHASMDLFRYSLKLWPWLPAELLADTLELAIASRVLDMRASPYDLSQWQ----------GGAAG-----SFDLSPVRIETAEGRKLYQREQSRLASWAQPLRARLLREYDSAIAVW 312          
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: A0A2W4JFU3_9ACTN (3-methyladenine DNA glycosylase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2W4JFU3_9ACTN)

HSP 1 Score: 115 bits (288), Expect = 1.350e-28
Identity = 65/139 (46.76%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    4 CRPLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDVWG 420
             RPLN  QL R GQ  N+QPGC+HANMDL+K+A +L PL+PSE +A+A  LA   R LDMRASPYDL+A G                        +PVRIET EGR EY  AQ +  +R+ P+R  L+  +DR+  + G
Sbjct:  183 ARPLNQRQLSREGQLENEQPGCLHANMDLYKYAYKLCPLIPSELVAEAFALAREIRALDMRASPYDLSALGY-----------------------SPVRIETPEGRAEYVAAQRDFAERAAPLRARLIEAIDRVTALAG 298          
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: A0A498AGD2_9ACTN (Uncharacterized protein n=1 Tax=Micromonospora sp. M71_S20 TaxID=592872 RepID=A0A498AGD2_9ACTN)

HSP 1 Score: 114 bits (286), Expect = 2.460e-28
Identity = 64/137 (46.72%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    4 CRPLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDV 414
             RPLN +   R  Q +++QPGC+HANMDL+KWA +L PL+PSE +ADA ELA   R LDMRASPYDL+A G  P                       VR+ET EGR EY +AQ    +R+ P+R  L+   DRLL  
Sbjct:  181 ARPLNLLSPTRETQHAHEQPGCLHANMDLYKWAYKLSPLVPSELVADAFELAREIRTLDMRASPYDLSALGYAP-----------------------VRVETVEGRHEYVRAQRSFAERAAPLRARLVAECDRLLST 294          
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Match: A0A6V8K6Z1_9ACTN (Uncharacterized protein n=1 Tax=Phytohabitans houttuyneae TaxID=1076126 RepID=A0A6V8K6Z1_9ACTN)

HSP 1 Score: 113 bits (282), Expect = 6.670e-28
Identity = 64/136 (47.06%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    4 CRPLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADALELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVRIETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLD 411
             RPLN +Q  R  Q  N+QPGC+HANMDL+KWA +L PL+ SE +ADA  LA   R LDMRASPYDL A G  P                       VR+ET EGR+EY +AQ     R+ P+R  L+  +DRL D
Sbjct:  165 ARPLNLIQPSRESQHDNEQPGCLHANMDLYKWAYKLSPLVESELVADAFALARDIRALDMRASPYDLAALGYEP-----------------------VRVETAEGRQEYARAQRAFADRAAPLRARLIAALDRLDD 277          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10896.1270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE5_ECTSI2.320e-9297.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TRZ0_9STRA6.050e-3146.15Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
UPI0018F14E5F7.020e-3148.183-methyladenine DNA glycosylase n=1 Tax=Qaidamihab... [more]
K8YX90_NANGC4.910e-3046.85Uncharacterized protein (Fragment) n=2 Tax=Monodop... [more]
UPI000A9BE9761.440e-2946.673-methyladenine DNA glycosylase n=1 Tax=Nocardia h... [more]
A0A2T0LPF7_9PSEU6.690e-2946.76Uncharacterized protein n=1 Tax=Prauserella shujin... [more]
A0A0M0J9Y2_9EUKA1.330e-2847.83Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A2W4JFU3_9ACTN1.350e-2846.763-methyladenine DNA glycosylase n=1 Tax=Actinomyce... [more]
A0A498AGD2_9ACTN2.460e-2846.72Uncharacterized protein n=1 Tax=Micromonospora sp.... [more]
A0A6V8K6Z1_9ACTN6.670e-2847.06Uncharacterized protein n=1 Tax=Phytohabitans hout... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10896contigEcto-sp8_S_contig10896:5539..6289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score283.5
Seed ortholog evalue5.5e-74
Seed eggNOG ortholog2880.D8LQE5
Model size426
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2BYH3@1,2S13W@2759
Cds size426
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143179.3925571-CDS-Ecto-sp8_S_contig10896:5538..57871681143179.3925571-CDS-Ecto-sp8_S_contig10896:5538..5787Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10896 5539..5787 -
1681143179.4008265-CDS-Ecto-sp8_S_contig10896:6112..62891681143179.4008265-CDS-Ecto-sp8_S_contig10896:6112..6289Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10896 6113..6289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10896.1270.1prot_Ecto-sp8_S_contig10896.1270.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10896 5539..6289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10896.1270.1

>prot_Ecto-sp8_S_contig10896.1270.1 ID=prot_Ecto-sp8_S_contig10896.1270.1|Name=mRNA_Ecto-sp8_S_contig10896.1270.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=142bp
MCRPLNPVQLERVGQRSNDQPGCVHANMDLFKWALRLWPLLPSEKLADAL
ELAVSCRMLDMRASPYDLTAHGKVPDTVVGRGGGKVGGLPPEAWDPTPVR
IETEEGRKEYQQAQAELYQRSMPVRRSLMRHMDRLLDVWGR*
back to top

mRNA from alignment at Ecto-sp8_S_contig10896:5539..6289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10896.1270.1 ID=mRNA_Ecto-sp8_S_contig10896.1270.1|Name=mRNA_Ecto-sp8_S_contig10896.1270.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=751bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10896:5539..6289- (Ectocarpus species8 EcLAC_412)
ATGTGCAGGCCTTTGAATCCTGTTCAGCTGGAGAGGGTCGGCCAAAGATC CAACGACCAGCCGGGGTGCGTCCACGCCAACATGGACTTGTTCAAGTGGG CCCTTAGGCTTTGGCCGCTGCTGCCATCGGAGAAGCTCGCGGACGCGCTC GAGCTGGCGGTGTCCTGCCGCATGCTGGTGCGTCCGTCTGCCCGCACGAC GCATCTGAAGTGGTGGTATAGTTTACGCATGCGTATCAGCTGCGGCAATG TATGACGCAATCTTCCAACAACGTTTGGACAGTGGTGATTGTGGCCATGC TGTCCCCGCGCCCCCCCTCCCTGCGCATGCGCAGGAGCACGGCCTCCACC GTCATCAGCAAGGAAGACAACGGTGACAACCCAAAAAAACACGATAACAG CAGCAGCTACGCAACCCCCCCTGTGTCCGCTGCTCATCTGACCCCCACCC TTCCCCTCCGTCGGACGTCGCCATCAACCGACCCCCCGTTGATCGTGTGT AGGACATGAGAGCTTCTCCGTACGATCTTACCGCACACGGCAAGGTTCCC GACACGGTCGTCGGCAGGGGGGGGGGCAAGGTGGGGGGTCTGCCGCCAGA GGCGTGGGACCCCACCCCGGTTAGGATAGAGACCGAGGAGGGTCGGAAGG AGTACCAGCAGGCGCAGGCAGAGTTGTATCAGAGGTCGATGCCCGTGAGG CGCTCGCTGATGAGACACATGGACAGGCTGCTGGATGTCTGGGGGAGATA G
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10896:5539..6289-

>mRNA_Ecto-sp8_S_contig10896.1270.1 ID=mRNA_Ecto-sp8_S_contig10896.1270.1|Name=mRNA_Ecto-sp8_S_contig10896.1270.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10896:5539..6289- (Ectocarpus species8 EcLAC_412)
ATGTGCAGGCCTTTGAATCCTGTTCAGCTGGAGAGGGTCGGCCAAAGATC
CAACGACCAGCCGGGGTGCGTCCACGCCAACATGGACTTGTTCAAGTGGG
CCCTTAGGCTTTGGCCGCTGCTGCCATCGGAGAAGCTCGCGGACGCGCTC
GAGCTGGCGGTGTCCTGCCGCATGCTGGACATGAGAGCTTCTCCGTACGA
TCTTACCGCACACGGCAAGGTTCCCGACACGGTCGTCGGCAGGGGGGGGG
GCAAGGTGGGGGGTCTGCCGCCAGAGGCGTGGGACCCCACCCCGGTTAGG
ATAGAGACCGAGGAGGGTCGGAAGGAGTACCAGCAGGCGCAGGCAGAGTT
GTATCAGAGGTCGATGCCCGTGAGGCGCTCGCTGATGAGACACATGGACA
GGCTGCTGGATGTCTGGGGGAGATAG
back to top