mRNA_Ecto-sp8_S_contig10895.1269.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10895.1269.1
Unique NamemRNA_Ecto-sp8_S_contig10895.1269.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10895.1269.1 vs. uniprot
Match: A0A6H5JPX1_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX1_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 3.090e-94
Identity = 251/318 (78.93%), Postives = 255/318 (80.19%), Query Frame = 1 
Query:  241 MTGRRRRHDTPSPLSQRRGGXXXXXXXPRSGDRGGQQQHQRXXXXXXXQSPRRSAADDGGVSRKRYSSXXXXXXXXXGDKDPARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGVARDAATADAA----AAGGPTPATARSQIESASPPAIVDEDAPTPPGSPAATSATKPSTEGPLAVNRGGGADDKEACXXXXXXXXXXXXXXXXVEAPAAGKNSFFAQLQASERKKGTVGTMHATGNHGGXXXXXXXXAGIQSSDWECLKCGKSNYKNASACDRCHALKRMTLWRD 1182
            MTG RRRHDTPSPL +RRGG XXXXX PRSGDRGGQQQHQ XXXXXXX  P RSAADDGGVSR R+S XXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXX                              G G+ARDAATADAA    AAGGPTPA ARSQIESASPPAIVDE APTPPGSP A SAT PSTEGPLAVN GGGADD EACXXXXXXXXXXXX    VEAPAAGKNSFFAQLQASERKKGTVGT+HATGNHGGXXXXXXXXAGIQSSDWECLKCGKSNYKNASACDRCHALKRMTLWRD
Sbjct:    1 MTGTRRRHDTPSPLFERRGGRXXXXXPPRSGDRGGQQQHQXXXXXXXXXXPPRSAADDGGVSRTRHSXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYKHRKKGERKSRCGGYDSNSSSDQGGEEGTGIARDAATADAANAAAAAGGPTPAIARSQIESASPPAIVDEHAPTPPGSPPAASATNPSTEGPLAVNGGGGADDTEACXXXXXXXXXXXXHKTAVEAPAAGKNSFFAQLQASERKKGTVGTIHATGNHGGXXXXXXXXAGIQSSDWECLKCGKSNYKNASACDRCHALKRMTLWRD 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10895.1269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPX1_9PHAE3.090e-9478.93RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10895contigEcto-sp8_S_contig10895:1161..4717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score65.5
Seed ortholog evalue5.2e-08
Seed eggNOG ortholog157072.XP_008861477.1
Model size1656
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Zinc finger domain
EggNOG OGs2EQC1@1,2STD6@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_001430.1
Cds size945
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10895.1269.1prot_Ecto-sp8_S_contig10895.1269.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10895 1632..4242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143179.3329883-UTR-Ecto-sp8_S_contig10895:1160..16311681143179.3329883-UTR-Ecto-sp8_S_contig10895:1160..1631Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10895 1161..1631 -
1681143179.3626652-UTR-Ecto-sp8_S_contig10895:4242..43431681143179.3626652-UTR-Ecto-sp8_S_contig10895:4242..4343Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10895 4243..4343 -
1681143179.36955-UTR-Ecto-sp8_S_contig10895:4578..47171681143179.36955-UTR-Ecto-sp8_S_contig10895:4578..4717Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10895 4579..4717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143179.3415186-CDS-Ecto-sp8_S_contig10895:1631..16711681143179.3415186-CDS-Ecto-sp8_S_contig10895:1631..1671Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10895 1632..1671 -
1681143179.3486183-CDS-Ecto-sp8_S_contig10895:2766..35371681143179.3486183-CDS-Ecto-sp8_S_contig10895:2766..3537Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10895 2767..3537 -
1681143179.3556523-CDS-Ecto-sp8_S_contig10895:4108..42421681143179.3556523-CDS-Ecto-sp8_S_contig10895:4108..4242Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10895 4109..4242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10895.1269.1

>prot_Ecto-sp8_S_contig10895.1269.1 ID=prot_Ecto-sp8_S_contig10895.1269.1|Name=mRNA_Ecto-sp8_S_contig10895.1269.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=315bp
MTGRRRRHDTPSPLSQRRGGRHDTPSPPRSGDRGGQQQHQRKRPRSRSQS
PRRSAADDGGVSRKRYSSSDSEGEGDGGDKDPARRRKKQRKDEKKARKRE
KKKAKRKSSSRGDKHRKKGDKKQRGGGYDSNSSSDQGGEEGAGVARDAAT
ADAAAAGGPTPATARSQIESASPPAIVDEDAPTPPGSPAATSATKPSTEG
PLAVNRGGGADDKEACVDEDAPTPPASPHKTAVEAPAAGKNSFFAQLQAS
ERKKGTVGTMHATGNHGGGGGAGGGGAGIQSSDWECLKCGKSNYKNASAC
DRCHALKRMTLWRD*
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mRNA from alignment at Ecto-sp8_S_contig10895:1161..4717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10895.1269.1 ID=mRNA_Ecto-sp8_S_contig10895.1269.1|Name=mRNA_Ecto-sp8_S_contig10895.1269.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3557bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10895:1161..4717- (Ectocarpus species8 EcLAC_412)
CAGCACTACAGCAGTGTACAGCAATCAGTGCTGGCGCCCTTTGAACCCTA
GCCCTCTCTCGTTGGAGGGAAAGAAGACACCCTTTTGTCCTTCACGCCAA
TACTTAGCTGGTAGGAGCACAGCAGTCAGGACACAACAGGTGAGACAACC
ATGTGCACTTTTTGAAAATCCAGCATCATGGGCTCCTTTGTCCCCGCACA
GCATCTCGTCTACAGCAGCGTCGCAGGGTAGAGAAAGCGCGCATTGCCAA
CTACAGGTGGTTCTTCACCAAGTTCCTCGGGGGTGTTTGTTCAGTACATG
CCCCTCCTGTCGATCCACACCGACCCATGCCCCACCCATCTTTCACACCA
CCTTGGCGTATGTATCATATGTAGGTGTTCAGTAGATACAGGCTCCGCGC
CCGCTGGACCCACGTCGAGTGCTGCAGAGCATCGACACCGGGGTAACGCG
TGGAGGAGAACCAGCGGCTTCCTCTATGACCGGCAGAAGAAGAAGGCACG
ATACTCCGAGCCCTCTCTCCCAGAGAAGAGGCGGCAGGCATGACACTCCT
AGCCCTCCGCGCTCCGGTGACCGAGGGGGACAGCAGCAGCACCAGCGCAA
ACGGCCCAGGTATGCATATGCTCCCGCTCCACCACGCCCTCTTCTCTCGA
TCGGGCGAAAGCACGCGGCTGCAGTACGATGCATGTATTATGCTCGCCCA
GCTCACGCGTTCGTATCCCGTCTGGTTTGTTGCATTATCCGCATCTGTTC
GCCGGTAGCAAAGGTAGCGAACGGTCACCAGCATCGACGCCTGTTAGAGT
ACCGTGTACGACACAAGATAACACACCACCTGGACTGATTTTCAAATCTC
GATTTTTATCAACAGCAGAAAGAGCCGCAGCGCCGAAAACGGCGGCTTTG
AAGCCGTCTGGTTGAGAGCTCTCCGAAAACGTATCGTTTCGTTTATTCAT
CCTCCTCGTCGTGGAGATTACTCCACGTCGTGGAGTAGTCGAGCTTTGAA
AATCGGTCCAGGGGGTGTGTTATCTTGTGTCGTATATCGTACGCGAAATC
GCATGATGCAGCCTCCAATGTCACAGCTCGTCGCATGGTTTCACCAGGTG
ATGCCGACAACATGGCCGCAACCCCAAGCGGGAATCTGATGGGCTCTTTC
GTTGACTCTTCTTGTGATCCCGACTTTCAGGTCTCGATCTCAATCGCCTC
GACGCTCCGCTGCCGATGATGGTGGTGTCAGTAGAAAAAGGTACAGCAGC
AGTGACAGCGAGGGTGAGGGCGACGGTGGCGACAAAGACCCCGCACGGCG
GCGCAAGAAGCAGAGGAAGGACGAGAAGAAGGCGAGGAAAAGAGAAAAGA
AAAAGGCCAAGAGAAAGAGCAGCAGCAGGGGTGACAAGCACCGCAAGAAG
GGGGACAAGAAGCAGAGGGGCGGGGGCTACGACAGCAACAGCAGCAGCGA
TCAGGGCGGTGAAGAAGGCGCCGGAGTAGCCAGAGACGCAGCGACCGCAG
ACGCCGCCGCTGCTGGAGGGCCGACGCCCGCAACAGCTCGTTCGCAAATA
GAATCGGCATCTCCACCAGCGATCGTGGACGAGGACGCGCCGACCCCGCC
GGGTAGCCCCGCCGCCACCAGCGCAACAAAACCAAGCACGGAGGGACCGT
TGGCCGTGAACAGAGGCGGCGGGGCGGACGACAAGGAGGCGTGTGTGGAC
GAAGACGCGCCTACCCCGCCGGCCAGCCCTCACAAGACAGCGGTGGAGGC
ACCCGCGGCAGGCAAGAACTCGTTCTTCGCTCAGCTGCAGGCTTCGGAGC
GAAAGAAAGGGACGGTAGGGACGATGCACGCCACGGGAAATCACGGCGGC
GGGGGCGGGGCGGGGGGGGGAGGGGCGGGAATACAATCGAGCGACTGGGA
GTGCCTCAAGTGCGGCAAGAGCAACTACAAGAACGCGTCGGCTTGTGACA
GGTACAGGATGGCTCCCCCACCGCGTCATAATCTCTTATCTTTTGACCCT
GAGACTCGTTTCTTGTTGCCTCTCTGAAAGGTGTAACCCCAACGGCGACT
ACCATAAGTTTTGCGTGGGGCTCATATGCATCGCTGAGCACCTGTCCTTA
ATTGTTGGTTGTTGTCTTCACATTAGAAACCGTTCATTCTCTCTACCCAG
TACCTTCTTCTGTCCGTACTAGTCTAACACTTGTCGCGGTCGATCTCCTG
TGACTCTTACTGCCGAGGTCTTATGTTTTCCATCTTTTTGAGCCTGAAGT
TGTCAACCCCCAGGTTGTGCAAATAGCGGTAGGTTCTACAGGGAGACGAT
GCGGTCAATCTTAGCCCCTTGAGTATATTGCGTTGCTGTTTCGGTCGCGC
GTGCTGCGGCTCTTTATGGACTTGCGGGGGGCAGCGGGGGAGGAGGGCAC
GTTGATGGCGACTCCTGTGGCCGTGCCTTGTTTGGGTCATACATCTTCGG
GGGACCGCGACCGAATGAGGGAATGAATGAGTTTGACACCGGGCCTACGC
TCTTGGTACGCGGTCTCTCCATCTGTGGCACCTGCTGTTCACGTGACTTG
AAACTATTCAATTGAAATTATCCGCCGCCGTAGGTTTCTTCCTCTTTGGA
CTAGAACTTCACCCCCCGTTCTAGATACACGTACGTGTGTCTGCTTTTTT
TGTGTCTTGTGGATACACTCAAACGAGTGCGGTGTCGGCGTCTTAGAAAT
GAGCGTACTCCCCTCGTGACGTTAGCCGTTCAATCCGCCAACTCTTGGCG
GTACCCCCCCTATCGTTGGTCAAAATAAAACCATCGCATTTTTTATAGAG
ACGAGGTTGTTTTTTTTTGCAGAAAAGAAGAAAGTTGCGTGTGCAATTCT
TTATTGTCGAAGACAACATCGTTTTTTTCATCGGTAGGCATGTCTATGTT
TGCCCCCTCCAGCCTCCCGCCCCACGCCGAGCTTGCCTCCCTCTGAAGGT
TCTACAGCAGTACGTTCGACCCAAAACTGACAAGTGATTGTCCCGCCATC
TGTACCTGCCCCCGTGTGTGCCCTCCCGTCCCTGGGTTGACTTCAGGTGT
CACGCGCTCAAACGGATGACGCTTTGGCGGGACTAGGCCTCTAGGCCTCG
TCCTTCTAAGGGATACCGGCGTCACTGCAGATAGCGACTTTCGTAGATAC
TTTGAAGTAAAACTAGCTGCCTCAAGAGTATCACCCGGACCTGAAGAAAT
CAGCTGTAGTGTGACCACTCGCAGGCAGTACCCACAACTCGATTCAGCTG
TGTCCTTCCGTTTGGGGTAACACACGTGGAAGACACTGGAACGCCTGTGA
ACGCACAAGGTTGCACGTGGTGTTTGTGTGGGGACGGAAACATTGATACC
CCGTTGTCCAGCGTGGTCGGTGGCAAGTTGCTCTTTCAGCTGCCGTGGGC
GACATGGAAATTTTCCAACCCTCCGCACGAACAATACGCAAAATCTGTTG
CCACAGCTGTGTTTTTGTGCGATTGGGTGAACGACTGTAAAGGGGCAATC
TTGTGGTGCGTTCACACAGCGAGCGTGGACTCGTGCCTGTAGTTTGAGGT
TAACGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10895:1161..4717-

>mRNA_Ecto-sp8_S_contig10895.1269.1 ID=mRNA_Ecto-sp8_S_contig10895.1269.1|Name=mRNA_Ecto-sp8_S_contig10895.1269.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=945bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10895:1161..4717- (Ectocarpus species8 EcLAC_412)
ATGACCGGCAGAAGAAGAAGGCACGATACTCCGAGCCCTCTCTCCCAGAG
AAGAGGCGGCAGGCATGACACTCCTAGCCCTCCGCGCTCCGGTGACCGAG
GGGGACAGCAGCAGCACCAGCGCAAACGGCCCAGGTCTCGATCTCAATCG
CCTCGACGCTCCGCTGCCGATGATGGTGGTGTCAGTAGAAAAAGGTACAG
CAGCAGTGACAGCGAGGGTGAGGGCGACGGTGGCGACAAAGACCCCGCAC
GGCGGCGCAAGAAGCAGAGGAAGGACGAGAAGAAGGCGAGGAAAAGAGAA
AAGAAAAAGGCCAAGAGAAAGAGCAGCAGCAGGGGTGACAAGCACCGCAA
GAAGGGGGACAAGAAGCAGAGGGGCGGGGGCTACGACAGCAACAGCAGCA
GCGATCAGGGCGGTGAAGAAGGCGCCGGAGTAGCCAGAGACGCAGCGACC
GCAGACGCCGCCGCTGCTGGAGGGCCGACGCCCGCAACAGCTCGTTCGCA
AATAGAATCGGCATCTCCACCAGCGATCGTGGACGAGGACGCGCCGACCC
CGCCGGGTAGCCCCGCCGCCACCAGCGCAACAAAACCAAGCACGGAGGGA
CCGTTGGCCGTGAACAGAGGCGGCGGGGCGGACGACAAGGAGGCGTGTGT
GGACGAAGACGCGCCTACCCCGCCGGCCAGCCCTCACAAGACAGCGGTGG
AGGCACCCGCGGCAGGCAAGAACTCGTTCTTCGCTCAGCTGCAGGCTTCG
GAGCGAAAGAAAGGGACGGTAGGGACGATGCACGCCACGGGAAATCACGG
CGGCGGGGGCGGGGCGGGGGGGGGAGGGGCGGGAATACAATCGAGCGACT
GGGAGTGCCTCAAGTGCGGCAAGAGCAACTACAAGAACGCGTCGGCTTGT
GACAGGTGTCACGCGCTCAAACGGATGACGCTTTGGCGGGACTAG
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