mRNA_Ecto-sp8_S_contig10893.1267.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10893.1267.1
Unique NamemRNA_Ecto-sp8_S_contig10893.1267.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10893.1267.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-8
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 3 
Query:  195 RAESTSRSGAATAPGLEYESAETPASDGGGGTLKQDPL 308
            RAESTSRSG ATAPGLE E AETPA+DGGGGT KQ+P 
Sbjct:   47 RAESTSRSGVATAPGLEQEGAETPAADGGGGTSKQNPF 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10893.1267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAG2_9PHAE1.270e-881.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10893contigEcto-sp8_S_contig10893:929..5094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size313
Hectar predicted targeting categoryother localisation
Exons3
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143179.2461019-CDS-Ecto-sp8_S_contig10893:928..10041681143179.2461019-CDS-Ecto-sp8_S_contig10893:928..1004Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10893 929..1004 -
1681143179.2603996-CDS-Ecto-sp8_S_contig10893:2660..28291681143179.2603996-CDS-Ecto-sp8_S_contig10893:2660..2829Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10893 2661..2829 -
1681143179.269589-CDS-Ecto-sp8_S_contig10893:5026..50691681143179.269589-CDS-Ecto-sp8_S_contig10893:5026..5069Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10893 5027..5069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143179.2766838-UTR-Ecto-sp8_S_contig10893:5069..50941681143179.2766838-UTR-Ecto-sp8_S_contig10893:5069..5094Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10893 5070..5094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10893.1267.1prot_Ecto-sp8_S_contig10893.1267.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10893 929..5069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10893.1267.1

>prot_Ecto-sp8_S_contig10893.1267.1 ID=prot_Ecto-sp8_S_contig10893.1267.1|Name=mRNA_Ecto-sp8_S_contig10893.1267.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=96bp
MKPVLLDKNNHHAEGDCSVARGGAAALHVPCFGDVCGDVHHGKEGRGRRR
RRARWREGRVDLAFGCRDSSGIRIRKRGDSCLRRWRWDTEARPLAR
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mRNA from alignment at Ecto-sp8_S_contig10893:929..5094-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10893.1267.1 ID=mRNA_Ecto-sp8_S_contig10893.1267.1|Name=mRNA_Ecto-sp8_S_contig10893.1267.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4166bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10893:929..5094- (Ectocarpus species8 EcLAC_412)
CGGCTCGAGGGCTTCGGCTCGGCGGATGAAACCAGTCCTCCTAGACAAGA
ACAATCATCATGCAGAGGGTGAGTGAGGCACGTGTGGTCTACCGTAGTGT
GCGCACTGTAGGGTCCTACCAAAGAGTTTTCGCAGTATAGCTGTGGCATA
TATGTATGTATGTATGCATGTTGTATGTATGTATGTACAAGGGCGCTTCG
CGGCGTACCGCTTCGCGGCGTACCGCTTCGCGGCGTACCGCTTCGCGGTC
GCCGCTACGCTCGTAGGTTGAATGGCGATGTCAAGTGTGTGCGGGTGGAG
TTTTGAAATGAGAGATTCGAAGAAAGAATGCGGCGAAGAGGGAAAAGTTG
TTTGTGTGTTCGAAGAGCAGGGATGCACAATGCATAATTTCATACTTCTA
TGTTACGATGTATCATGCGACGGCCGGAGGACAGAGAGTATTTATTGTAA
TTACTCGGAGTAAGAAATTTGTTTTTAAGAAACAAAGGCTCACTTTTTCC
ACGAAAAAAATAGGAAAATGGGTCAAGTTACTACATAATAGCTCAACCTT
TGGGCCGCACAATAGAAAAAACGTCTCAACAAGCAAACAGAGGAGCGACC
CCTTAAATACTCTACTATTCGCAAGACACGACACGAGGGGTTTCTGGGGG
GGAGTGAGTGTGTTTGTGTGTGTCGAATAATAGTAAAACTTAGGAAGATA
CACCAAGCAAACAACAGCTTTTTCGCTCTCTCTCTCTCTTCCCCCTCTCC
CACGTGCTATACCCACCCCAACGTTGTAGCTGAATAAACTTCGCTTCTTG
GGGTGTGTGGTTTTCGTATGTGATCTGATGTACTGCCATCGGTGGTGAGA
ATCGGGGTTGAGTACGGTAGGCGAGGAAAAACAGCACAAATCATTAGGTA
CGTACGGTAGTTTTGCAGCACGTTGTGTGTAAGCAAAAGCAGTGAAAATT
AGACAACCTTTGCCGATTTATGGAAATATGGCAACCCACAGCAGCAGCAG
TATTGCTATATGCTCTGCCAGAGGGTTTTGGGAGTCAGATGACTGTAGAA
GTTCGTGTGTTGGTGTGTGTTGGTGGGATGCGGGGCATGTCGTCCCTGTA
GCTGCTCTACAATAAACTGCTGCTGTAGTTCGGTAGGCAGCAGGTAGCCA
GAAGATACTTCCGAAAAAAAAAAAAGTGCTTCCATGAAACGGAGGAACAA
ACAACCTATTTCATGTTTTTTTTTTCTCGGGCGGGTGTACTGTAGTTTTG
CAGCCAGCAGTGCGCACGACACCGGCCGCTAGCCCCCCCGCTTTTCGCCG
GGATCGAAAGGGAGACGCACTACAGCAGTAGATTACTTTGTCTCGTGTAA
TGCGGAGACTTGGTGACTTAGTTGTCGTGTGTATGTAGCGCGTAGCCAGC
GCACGCGCACGACGTCAGCCGCTTGCCGAACGTATGAATGGCCTGCACTG
TCAAGAAATCGGGGTGTGATTGGTGGATCCATGGTAGATGTCGGAGACGC
GACTTTCTGCCCTTGTAGCGCTGCACGCAGTCCGCCCCGAGGGCGCGCGG
CACGCCGGGAGAGCCCTCGCAACACAGGGCAATCGGTAGGTGTGAGTCTC
GCTTCGAGGCGAGGTCTATGGACGGAGAAACCGCGAAAAAAGGGCTCTAG
GCTCACGAGAGCATCAGGATTGCATTTACTGCGATCTCGTTAGCCCTCAG
CCCGTAGGAAATCCGTCTATAGGTCTATGTTTGTATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGCATGCTGCA
TGTTTGTATGTATGCATGCTGCATGTTTGTACGTATGTTGCCATAAATCA
CTGTAATGTATGTATGCATGTGCTTATGTTGCTCTAAAATCACTGTAATG
TTGTACAGCGCATTGCCCTTCGCCGGTTTTAAGAGACTCGCATGATCCGA
CCACAAGATTTTGCGAAAATTTTCGCAAGTTGTTTTGTTTTCCCGAATTT
ACGTGGGAATAGTTGCAACACCGTGATGAAGGTCCGCGTGTGGTCATACA
CGCCCTATGGAGAGACCGATCAATTCCAAAGCTCGAGTGCTCTGCGTAAC
CGAAAATAGTTGCAAAACCGCCCTCCACACTAAAACTAGCATATTTGCCA
AGGATACGCCCTCGACAAGCCCAAACTTGACCGCCAGCTGACGCCTTGGC
TTCCTGCTGTACAAGGTGATTGCTCTGTTGCTCGTGGTGGTGCGGCTGCT
CTGCATGTTCCCTGTTTCGGAGACGTCTGCGGTGACGTTCACCATGGTAA
AGAAGGGAGGGGCAGAAGAAGAAGAAGAGCGAGGTGGCGGGAGGGCAGAG
TCGACCTCGCGTTCGGGTGCCGCGACAGCTCCGGGTGAGGCTCGACGTAT
GTATGTATGTGTACGTATGTATGTATCGATGTGTGCATATGTAGCATTTC
GACTCTTTTGGTGGTCGCGTTCATTTTTCTCTGCTGGGACAGCGTTTTTT
CTCGCACTTTCTTCTGCATGGCACGCAGAGGACCCGTCGGTACATCGCCC
GTTACGTGTGGGGCTCGCGAGACACCGGTGGTGCGTGTTAGGGCCGCCTA
AAGTCGCTGGGACTGGCTCTATTTTCAGGGGTTGGGAATCCGAACCATAA
AAGCCTCCTCAAACGGGATGAAACTGAAAACATAACTTTTTTTGCCTCGC
GCCCCGCGCCCCGCGCCCCGCACCCCGCGCCCACGCGCCCACGTGCCCAC
ACAGCTGCTGTGGTTGTTGTAGTACACACATACCACACAGCAACTGGTGC
AAATTCATCGATAGTAGCAGCGAAACAACAGCATCGGAGCGACAACGCGG
CTGGCTATCGCACGCTACAAGTGCACGTGTACCCTCGCGCGATGCCGCAC
GCAATACGCATGTGCTTCTACCCGATTTGTTTCGGAACTGTTCTTAAATG
TCAAAAGAAACAGAATGTGCATTGCCGTGATCAGTTAAAGGTAGTGTCGT
CTGTGCGAGATAGTATTTGTCTGCCTCTTCAGACGGCACAGCAGTTGAGA
TGTTTTTCAGCTTGAATCACCCCCGGGATGGCATGTGCCTACATCCCAGA
ACGGGGGACCTTGGATATACCTGTATGTCAATTCTGGTGGTGTTGCGTGC
TTTCGGCTGCGTGCTGGTCCTACGGGTATGTGTGTGTGTGTGTGTGTGTG
TGAGAGAGAGAGAGATGCAGCAAACGGTCAGCTCAACCCCAACAGTCCGG
AGTGAAGATCTAGCTGCCGTGGTGTGCTTTCCGACACGAATTGCGTCCTG
GTTTTCGACGAGCGGAGCGACATCCCGAATAATTCTCTCGTCAACAAGCC
GTGGCGCCGAGATTGTATCCTTTTTTCAGGGACTTTCGTGTACACCGGCA
TATGGCTCATTTTGTTTTCTCAAGATCAACCATTCGACCGGATCGGTTCG
CCCATGGAACTTGCCTTCTCCCCCCCCTCGGATCGTCGGCGCTAGCGAGT
TGGGGGATAGAATACTCGAGGTGCCCCGCGTACTCTGTGCGCCGTCCCTG
TGCTTGATGATGCGCGCAAACCTTTACGAGAGTTTGAGGTGCTATCTACT
GGCGCTTTCCTTAATCTACTGGCGCATTCCGTTATTCTAGTGCACCCCTT
CATCTGACGGACAGTGGCGCTACCGGACCGTTACGCGCTTGTGGACCCCC
CCCCCTGGATCCGGCGCTATACAACAATGCCTACCAATATTTTTGGAACA
CCGGAGGTGCCCCGTGTACCCTGCCGTGACCCGTGTCTCGTTAGGACGCT
GTGCCCATACCTTCCGCACATAGGACAGATCATGAGCTAGCTCACGTATG
CCCTTCAGATCGTCATTGACCAAGTTCACGAATGTCCTACAGTAACCAAT
CACATGGGACGTGCCATCGTCGAAAGAGCTAGCTCCATCTGCAAGGATCT
GATCTGTCCTACCTACGTCGGAAACCTTCACGACAGCAAAAACAGAATAT
CTCTATTTTTGACAACCCGGAGTACCGCCGTCGCGCGCAGGATTAGAATA
CGAAAGCGCGGAGACTCCTGCCTCCGACGGTGGCGGTGGGACACTGAAGC
AAGACCCCTTGCTAGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10893:929..5094-

>mRNA_Ecto-sp8_S_contig10893.1267.1 ID=mRNA_Ecto-sp8_S_contig10893.1267.1|Name=mRNA_Ecto-sp8_S_contig10893.1267.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10893:929..5094- (Ectocarpus species8 EcLAC_412)
ATGAAACCAGTCCTCCTAGACAAGAACAATCATCATGCAGAGGGTGATTG
CTCTGTTGCTCGTGGTGGTGCGGCTGCTCTGCATGTTCCCTGTTTCGGAG
ACGTCTGCGGTGACGTTCACCATGGTAAAGAAGGGAGGGGCAGAAGAAGA
AGAAGAGCGAGGTGGCGGGAGGGCAGAGTCGACCTCGCGTTCGGGTGCCG
CGACAGCTCCGGGATTAGAATACGAAAGCGCGGAGACTCCTGCCTCCGAC
GGTGGCGGTGGGACACTGAAGCAAGACCCCTTGCTAGA
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