mRNA_Ecto-sp8_S_contig10892.1266.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10892.1266.1
Unique NamemRNA_Ecto-sp8_S_contig10892.1266.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10892.1266.1 vs. uniprot
Match: D8LR68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR68_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 3.230e-69
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 1 
Query:  145 NRFSASSFRGXXXEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEGLEGVYLLAVDNLGEEQEARPTPTAGIP 489
            NRFSASSFRG   EQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEGLEGVYLLAVDNLGEEQEARPTPTAGIP
Sbjct:    4 NRFSASSFRGGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEGLEGVYLLAVDNLGEEQEARPTPTAGIP 118
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BLAST of mRNA_Ecto-sp8_S_contig10892.1266.1 vs. uniprot
Match: A0A6H5KV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV72_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 6.710e-62
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  145 NRFSASSFRGXXXEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEGLEGVYLLAVDNLGEEQEARPTPTAGIP 489
            NRFSASSFR    EQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSD IRSWLLDWPVAGKIRGMCVSPDLQCVLCATEGLEGVYLLAVDNLGEEQEARPTPTAGIP
Sbjct:    4 NRFSASSFREGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDCIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEGLEGVYLLAVDNLGEEQEARPTPTAGIP 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10892.1266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR68_ECTSI3.230e-6997.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV72_9PHAE6.710e-6295.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10892contigEcto-sp8_S_contig10892:4896..6614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size491
Hectar predicted targeting categorymitochondrion
Exons3
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143179.1691017-UTR-Ecto-sp8_S_contig10892:4895..49101681143179.1691017-UTR-Ecto-sp8_S_contig10892:4895..4910Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10892 4896..4910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143179.1852226-CDS-Ecto-sp8_S_contig10892:4910..50391681143179.1852226-CDS-Ecto-sp8_S_contig10892:4910..5039Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10892 4911..5039 +
1681143179.195932-CDS-Ecto-sp8_S_contig10892:5554..57611681143179.195932-CDS-Ecto-sp8_S_contig10892:5554..5761Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10892 5555..5761 +
1681143179.215681-CDS-Ecto-sp8_S_contig10892:6476..66141681143179.215681-CDS-Ecto-sp8_S_contig10892:6476..6614Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10892 6477..6614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10892.1266.1prot_Ecto-sp8_S_contig10892.1266.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10892 4911..6614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10892.1266.1

>prot_Ecto-sp8_S_contig10892.1266.1 ID=prot_Ecto-sp8_S_contig10892.1266.1|Name=mRNA_Ecto-sp8_S_contig10892.1266.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=158bp
MASVQLVRLASVKTAVRRTSSGTSSGSESSAARISRRSSFASSNRFSASS
FRGGGGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDGI
RSWLLDWPVAGKIRGMCVSPDLQCVLCATEGLEGVYLLAVDNLGEEQEAR
PTPTAGIP
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mRNA from alignment at Ecto-sp8_S_contig10892:4896..6614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10892.1266.1 ID=mRNA_Ecto-sp8_S_contig10892.1266.1|Name=mRNA_Ecto-sp8_S_contig10892.1266.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1719bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10892:4896..6614+ (Ectocarpus species8 EcLAC_412)
GAATTCCCCTGAGGGATGGCGTCTGTCCAGCTCGTACGCCTGGCAAGCGT
CAAGACGGCTGTGAGGCGTACATCCAGCGGCACATCCTCGGGTTCGGAGT
CCTCAGCAGCAAGGATCAGCAGGAGATCATCTTTCGCAAGTTCGGTAGGT
CTCTGAGGTGCTGCTGTTGTGTTCTTCTGATTGCCAAGGTCCCAGGAACT
ACTGGAATGTAGTAAGGTAGAGTCCCAGGAGCTGCTGGCATGTAGTTAGG
CATGGGATGCGTGGGGCTCACATCATTTTGATGTAGTTGGTCAGGCCCAA
GAACTGTTCTGATCTCCGATGATTTGGTGTGAAAACATGTACACCACATA
CAGCTTAGCAGGTTCTGTCCCGACCTTCGCTCGGCCGCTGCACGAAGGTA
GTACGGAAACGGCAACGGCAATGTACTTGCTACCGAGACGTTTAAATGTT
TATTTACGTCAAGACCCACACCCCTCTCCCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCCCCCTC
TCCCCCTCCCTCCCTTTTTCCCTTTTTTTCTCTCTCCCCCCCCCCCCCCC
CCCTCCCCTCGCTCTCTTTCTTTCTCTCTGGTGCGTGGGCACACGTCAAC
ATGCCTCAGAATCGCTTCTCGGCGTCCTCTTTCCGCGGGGGCGGCGGGGA
GCAGGAGGCCGCGGCGAAGAATGTCGGCATCGAAGTCTTCGCGCACGGGG
CTTTGGGCACGGACGCTCTTCTTGTGGCGTCGCTATCCAACTCTGCTCTC
CTCATCTTGCGCATCGGATCTGACGGTATTCGAAGCTGGCTGTTAGACTG
GCCCGTTGCGGGCAAGGTGAGAATGAATGCACGTTTGGTCTTTGGATATC
TCAGACGAAGATGTCCCTTAATTTGCCAGGTGGCGCTGCTGGCGTAGCAC
AGCTGGCTCCTTTTTGCTCCACAGCAGTCTTATTGCCTGCTCTAATTTTA
GGTTGTTGTGGCGTGACAATAATGGTACATAGTACAGCTGTGTCTCACGG
GTCAGGTTATCTTAGCTCGTGGCCCCCACGCGCGCCTAATGGCCTTCAAA
ACCGGAGCGATGAACAGGTGCTTGTCCTGATGTACGAACTCTGCAAGGTA
CGGCATTATGTCTTTGTTTCGAAGGCATACCTGCATGCCACGGTGTTCCC
CTGCAGGTGAATTCGCAGAGCGGCCTCGGTGAGGGATTGGGGTGTTGGGA
TTACACAGCAGTATTTGTACATGCAATGTAGAAAAGCCGTCCGATTTTTG
TTTCGGTTCGAGCACGTGGGAGAATGTCAACATGAAGCGGCCACCGGCAT
CACGTGTTGTCACCCACGGAGCATCGAGACTGCAACCGTTTGTCATCCCA
TGTCGATGGCTACTACACGCACACGTGTCCCTCCTCCGCGAAAGCACGAG
ACCGCCGTTACATCGGCGGCGCAATCGCAGGAAACACGCCCACACCGCGG
CAACGCAACACCTCGCCAGAATCACTCGCACGCTCGTGTCCCCCACCTCC
CGTGACAAACACAAAACAACAAAATAACCAGATTCGGGGGATGTGCGTCA
GCCCGGACCTGCAGTGCGTCCTCTGCGCGACCGAGGGCCTCGAGGGGGTC
TACCTCCTGGCCGTGGACAACCTGGGGGAGGAGCAGGAGGCTCGACCAAC
GCCGACAGCAGGGATCCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10892:4896..6614+

>mRNA_Ecto-sp8_S_contig10892.1266.1 ID=mRNA_Ecto-sp8_S_contig10892.1266.1|Name=mRNA_Ecto-sp8_S_contig10892.1266.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10892:4896..6614+ (Ectocarpus species8 EcLAC_412)
ATGGCGTCTGTCCAGCTCGTACGCCTGGCAAGCGTCAAGACGGCTGTGAG
GCGTACATCCAGCGGCACATCCTCGGGTTCGGAGTCCTCAGCAGCAAGGA
TCAGCAGGAGATCATCTTTCGCAAGTTCGAATCGCTTCTCGGCGTCCTCT
TTCCGCGGGGGCGGCGGGGAGCAGGAGGCCGCGGCGAAGAATGTCGGCAT
CGAAGTCTTCGCGCACGGGGCTTTGGGCACGGACGCTCTTCTTGTGGCGT
CGCTATCCAACTCTGCTCTCCTCATCTTGCGCATCGGATCTGACGGTATT
CGAAGCTGGCTGTTAGACTGGCCCGTTGCGGGCAAGATTCGGGGGATGTG
CGTCAGCCCGGACCTGCAGTGCGTCCTCTGCGCGACCGAGGGCCTCGAGG
GGGTCTACCTCCTGGCCGTGGACAACCTGGGGGAGGAGCAGGAGGCTCGA
CCAACGCCGACAGCAGGGATCCCC
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