mRNA_Ecto-sp8_S_contig10863.1247.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10863.1247.1
Unique NamemRNA_Ecto-sp8_S_contig10863.1247.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10863.1247.1 vs. uniprot
Match: D7FRN3_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN3_ECTSI)

HSP 1 Score: 479 bits (1232), Expect = 2.420e-162
Identity = 245/262 (93.51%), Postives = 246/262 (93.89%), Query Frame = 1 
Query:  406 MVRLPNTATFGELLACAREKRHGVLELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRPLSLTMGPGATIGDVKQRIRVDHGIVPSRQGLMICGGAQRLRDNVALKECCVSGVPVGGFSPKGWGELRLELHVTECTTRNSLQQVAMKDSSQGWSASEFRGAVGVGLPSRGTDVLRFPLQPSHLTSSPPVAATYVPQNNEGSSLT-PSSLLRNGASTVETRPAVEHGSGPYSTVMFALSPSGRALTLT 1188
            MVRLPNTATFGELLA AREKRHG LELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQR LSLTMGPGATIGDVKQRI VDHGIVPSRQGLMICGGAQRL  NV LKECCV GVPVGGFSPKGWGELRLELHV ECTTRNSLQ VAM+DSSQGWSASEFRGAVGVGLPSRGTDVLR P QPSHLT SPPVAATYVPQNNEGSSLT PSSL RNGASTVETRP VEHGSGPYSTVMFALSPSGRALTLT
Sbjct:    1 MVRLPNTATFGELLARAREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCVWGVPVGGFSPKGWGELRLELHVAECTTRNSLQ-VAMRDSSQGWSASEFRGAVGVGLPSRGTDVLRSPSQPSHLTPSPPVAATYVPQNNEGSSLTTPSSLHRNGASTVETRPTVEHGSGPYSTVMFALSPSGRALTLT 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10863.1247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRN3_ECTSI2.420e-16293.51Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10863contigEcto-sp8_S_contig10863:2..2686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1188
Hectar predicted targeting categoryother localisation
Exons6
Cds size1188
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10863.1247.1prot_Ecto-sp8_S_contig10863.1247.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10863 2..2686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143177.6214669-CDS-Ecto-sp8_S_contig10863:1..3131681143177.6214669-CDS-Ecto-sp8_S_contig10863:1..313Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10863 2..313 -
1681143177.6292107-CDS-Ecto-sp8_S_contig10863:553..7541681143177.6292107-CDS-Ecto-sp8_S_contig10863:553..754Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10863 554..754 -
1681143177.638486-CDS-Ecto-sp8_S_contig10863:997..13481681143177.638486-CDS-Ecto-sp8_S_contig10863:997..1348Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10863 998..1348 -
1681143177.645689-CDS-Ecto-sp8_S_contig10863:1614..17541681143177.645689-CDS-Ecto-sp8_S_contig10863:1614..1754Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10863 1615..1754 -
1681143177.652546-CDS-Ecto-sp8_S_contig10863:2245..23281681143177.652546-CDS-Ecto-sp8_S_contig10863:2245..2328Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10863 2246..2328 -
1681143177.6617255-CDS-Ecto-sp8_S_contig10863:2585..26861681143177.6617255-CDS-Ecto-sp8_S_contig10863:2585..2686Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10863 2586..2686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10863.1247.1

>prot_Ecto-sp8_S_contig10863.1247.1 ID=prot_Ecto-sp8_S_contig10863.1247.1|Name=mRNA_Ecto-sp8_S_contig10863.1247.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=396bp
MAGDGFVVVVALEPRPLPSLGLDERFTRIDYTAKCTMLDVLEDMARVLRV
PTGDLTLLESAGLEAVDLTHRLSEYHGQHTAPCSSVFAGKRHQWPRYVKR
QRKEINLKVKHTPVPHQLVTCTVEGGKGRNVLRRAMVRLPNTATFGELLA
CAREKRHGVLELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVV
SFPRGSQRPLSLTMGPGATIGDVKQRIRVDHGIVPSRQGLMICGGAQRLR
DNVALKECCVSGVPVGGFSPKGWGELRLELHVTECTTRNSLQQVAMKDSS
QGWSASEFRGAVGVGLPSRGTDVLRFPLQPSHLTSSPPVAATYVPQNNEG
SSLTPSSLLRNGASTVETRPAVEHGSGPYSTVMFALSPSGRALTLT
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mRNA from alignment at Ecto-sp8_S_contig10863:2..2686-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10863.1247.1 ID=mRNA_Ecto-sp8_S_contig10863.1247.1|Name=mRNA_Ecto-sp8_S_contig10863.1247.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2685bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10863:2..2686- (Ectocarpus species8 EcLAC_412)
ATGGCAGGCGACGGGTTTGTGGTGGTCGTGGCATTGGAGCCTAGGCCACT
GCCAAGCCTTGGTCTCGACGAGCGCTTCACTCGGATCGACTATACAGCCA
AGTGAGCTAACTGCCCCCCGCTGCTTGTGATTGACCCTCGTATTCAATAA
CTGTGTCTACATGTACTGTAGACTCATCTGTCATGTGTCGGGGTCGCGTG
AGCGGGACACACGGGCGGTGACAGTCCCTTAATCGTCCATCGCGACTTCC
ATCGCGCGTGTACCTCTCTCTCTCTCTCTCTCCTCGTCAATCACAACTCG
TGCGGAAAATGCGAATGGTTCAGCACCACCCCACCCACCCCCCTTATTGT
CCTACCAGATGTACCATGCTCGATGTTCTCGAGGATATGGCACGTGTGTT
GAGAGTGCCGACAGGAGACCTAACTTTGCTGGAGTCTGCAGGTGTGCATC
GTAGTCTAGACTTGCAAGCAATAGCAACGTACCCTCGTAGGACGGTATGT
GAACAAGCATCATAGTTAAGTGGTGGCGAATATTGTGGCCCTCGACGCTA
CAGCAGTTGCGTAGGGAGGGTGCCAGAGAGGCGAAAGCGGAGGGGTTGGT
TGAACGAAACTACTTGATGATCACGTTACTACTACTGTTGTCAAAACATA
CTGTTTGTAAGACTACTCTGTAGAACTATTGCTGCATAAAGCAGTAGTAC
AATACCTCAAGTGCGGCCAGAAAAATTCGATTTATCGGAACATATTGAGT
TTTTCTGTTCGGCATCCCGTGTCAATAGGTGCTCGTAGGCTTAACTTCCC
GGCGGCCCTGTTTCTTGGGTGCATGAAATCTGTCCGCTAATAACGGCGAC
ATGTGACAAGCACCGACTTTCGTTCCGCAAGCATGCCGAATTGCCAGCCT
CTTTTCTTTCGTGTTTCACTTTCATCACGTAGGACTGGAGGCTGTAGACC
TAACGCACAGACTGTCGGAGTACCACGGCCAGCATACTGCACCATGCTCC
TCTGTTTTCGCTGGAAAGCGCCACCAATGGCCTCGCTACGTCAAGCGGCA
GCGGAAGGAGATCAACTTGAAGGTATCCCGACCAGGCCGATAAGCGACAA
GAAAATAGTCTACATTAAGCCTCTGTCGCCGTGCCTGAAGTACATAGAGC
GGGGCAAAATTTCCTGAAAGGCGCACATGTCACAGAGGTCGAGGACGGAC
CTATCCAATACTTTTTGTGAGCACAGGTAGATCTTTAGTTCTGTCAACCG
CGTGTACGAAACTTGTTCGGCGGTTTATCAGAGACCGTTACTAAAAATTG
TGGCGTGCTCCGACGTCGTTTTGTTACTATCGCGGCAGGTGAAGCACACT
CCGGTACCGCATCAGCTAGTCACATGCACAGTGGAGGGGGGCAAAGGCCG
CAACGTCCTTCGTCGGGCCATGGTTCGGCTGCCCAACACCGCAACGTTCG
GGGAGCTGCTCGCATGCGCTCGAGAGAAACGACATGGGGTCCTTGAGCTT
GAAGGCCCTGTGTACGGGCGCGATGGTGAACTAGACACCACATTGCGGGA
TGGCTGGGTGCGGAATAGTTGCAAGGTTGATGGAACACTGCACATAGGCC
TTGCGGTCGTCGTTTCGTTCCCTCGTGGAAGCCAGAGGCCGCTGTCTCTC
ACCATGGGGCCAGGCGCCACGATTGGTGACGTGAAACAGGTGAGATTGCC
GCGACTTGCTTTCAACACTTCGAAGCACTTCCAGTATCGCAGACGTTACG
AAAGGTGTTTGTATCGATAGGGGATGCTCATGCGGCAGCCGTAAAGTACC
TTCTGAGACATCCCGTGAAACCTTCGATATTTCGACAGGTCGTCCAAAGG
CATGCACCAAGAGTAAAGTCGACGCGCTGCTTGATCACCACCCATCTCAC
CTGTCCGTTGTCTTTCAAACTACCTTGTACAGAGGATACGTGTCGACCAC
GGCATCGTCCCAAGCCGCCAAGGCTTGATGATCTGCGGAGGGGCGCAGCG
ACTACGAGATAACGTTGCCCTCAAGGAATGCTGCGTGTCGGGGGTTCCAG
TGGGAGGGTTTTCGCCGAAGGGCTGGGGCGAGCTACGTCTTGAGCTCCAC
GTTACGGAATGCACCACGCGAAACAGCCTTCAGGTAAGAGCCAGAGGTTG
GTCACTCTCGTCTTTGACGTTACGTCAATCTGCATGTGTTACAATATCCC
TCTTCGAGCTTGAATAGACGCACAGAGCCCAGTACGACTGTGAATGCTTT
TGGTAAACCTGCGCGCCAATCGTGGACGTCTGCGAGACATGCTTTGCTCT
CATCTTGCGCTCGCAGCATCTTGAGGGGCGAACGGCCCATCGACCGGTTC
GTACTCCCCCGTTATTAATGTAGCAGGTGGCAATGAAAGATTCAAGCCAA
GGTTGGTCCGCCAGCGAGTTCAGAGGCGCCGTTGGCGTCGGTCTTCCATC
TCGAGGCACCGATGTACTACGGTTCCCTTTGCAGCCCTCTCACCTCACAT
CATCACCCCCGGTGGCGGCCACCTACGTCCCACAAAACAACGAGGGTAGC
TCCTTGACGCCGTCATCTTTGCTCCGCAACGGCGCTAGCACGGTCGAGAC
CCGACCCGCCGTCGAGCACGGGAGCGGTCCTTACTCAACCGTCATGTTTG
CTCTGAGCCCCTCCGGCCGGGCGCTGACGCTGACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10863:2..2686-

>mRNA_Ecto-sp8_S_contig10863.1247.1 ID=mRNA_Ecto-sp8_S_contig10863.1247.1|Name=mRNA_Ecto-sp8_S_contig10863.1247.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1188bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10863:2..2686- (Ectocarpus species8 EcLAC_412)
ATGGCAGGCGACGGGTTTGTGGTGGTCGTGGCATTGGAGCCTAGGCCACT
GCCAAGCCTTGGTCTCGACGAGCGCTTCACTCGGATCGACTATACAGCCA
AATGTACCATGCTCGATGTTCTCGAGGATATGGCACGTGTGTTGAGAGTG
CCGACAGGAGACCTAACTTTGCTGGAGTCTGCAGGACTGGAGGCTGTAGA
CCTAACGCACAGACTGTCGGAGTACCACGGCCAGCATACTGCACCATGCT
CCTCTGTTTTCGCTGGAAAGCGCCACCAATGGCCTCGCTACGTCAAGCGG
CAGCGGAAGGAGATCAACTTGAAGGTGAAGCACACTCCGGTACCGCATCA
GCTAGTCACATGCACAGTGGAGGGGGGCAAAGGCCGCAACGTCCTTCGTC
GGGCCATGGTTCGGCTGCCCAACACCGCAACGTTCGGGGAGCTGCTCGCA
TGCGCTCGAGAGAAACGACATGGGGTCCTTGAGCTTGAAGGCCCTGTGTA
CGGGCGCGATGGTGAACTAGACACCACATTGCGGGATGGCTGGGTGCGGA
ATAGTTGCAAGGTTGATGGAACACTGCACATAGGCCTTGCGGTCGTCGTT
TCGTTCCCTCGTGGAAGCCAGAGGCCGCTGTCTCTCACCATGGGGCCAGG
CGCCACGATTGGTGACGTGAAACAGAGGATACGTGTCGACCACGGCATCG
TCCCAAGCCGCCAAGGCTTGATGATCTGCGGAGGGGCGCAGCGACTACGA
GATAACGTTGCCCTCAAGGAATGCTGCGTGTCGGGGGTTCCAGTGGGAGG
GTTTTCGCCGAAGGGCTGGGGCGAGCTACGTCTTGAGCTCCACGTTACGG
AATGCACCACGCGAAACAGCCTTCAGCAGGTGGCAATGAAAGATTCAAGC
CAAGGTTGGTCCGCCAGCGAGTTCAGAGGCGCCGTTGGCGTCGGTCTTCC
ATCTCGAGGCACCGATGTACTACGGTTCCCTTTGCAGCCCTCTCACCTCA
CATCATCACCCCCGGTGGCGGCCACCTACGTCCCACAAAACAACGAGGGT
AGCTCCTTGACGCCGTCATCTTTGCTCCGCAACGGCGCTAGCACGGTCGA
GACCCGACCCGCCGTCGAGCACGGGAGCGGTCCTTACTCAACCGTCATGT
TTGCTCTGAGCCCCTCCGGCCGGGCGCTGACGCTGACC
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