mRNA_Ecto-sp8_S_contig10862.1246.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10862.1246.1
Unique NamemRNA_Ecto-sp8_S_contig10862.1246.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: A0A6H5L888_9PHAE (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L888_9PHAE)

HSP 1 Score: 586 bits (1510), Expect = 3.170e-207
Identity = 290/375 (77.33%), Postives = 306/375 (81.60%), Query Frame = 1
Query:    1 MSAMTESATPACPSDGRKHPPTRRGIIVNVMVESADKFVDFMGKTTKAKVNLRLTDGGGYALSRRSRTSYLATPYTHNHRGFPVQEYFRFPDEDGKIMHLAVDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIFPFILVRDCPAYMTFLTDALGAEAVSPPDKAPTGKIMCAQMKINGGIIMVADQCDEDSA--EVAMTISYEIGKDEAAPLAKSFTDNGGEVLQPVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSKADMTKDMEMGAKYDWRYTWVIEDMPTVYCYGAISTSAANGPAISEETNKTLPA 1119
            MSA T SATPA P DGRKHPPTRRGIIV+VMVESADKFVDFMGK  KAK                                    EYFRFPDEDGKIMHLA+DIGGVALYVEELGNKMDTGAISTPH RLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI PF+ VRDC AYMTFLTDALGAE V PP K PTGKIMCA+MKINGGIIM+ D C +D++  E +MTI+YE+GKDEA PLAKSF DNGGEVL+ VSMQFWGQVWGRC DPFGQP  LCEVQEGP PS  DM KDME+GAKY+WRY WV+EDMP VYCYGA+STSAANGPAISEE NKTLPA
Sbjct:    1 MSATTGSATPASPCDGRKHPPTRRGIIVDVMVESADKFVDFMGKAAKAK------------------------------------EYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIIPFVSVRDCSAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCSKDASKTEASMTIAYEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCHDPFGQPXXLCEVQEGPPPSNEDMAKDMEIGAKYNWRYNWVVEDMPIVYCYGAMSTSAANGPAISEEINKTLPA 339          
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: A0A6H5JNL3_9PHAE (AraC_E_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNL3_9PHAE)

HSP 1 Score: 502 bits (1293), Expect = 3.680e-175
Identity = 237/278 (85.25%), Postives = 252/278 (90.65%), Query Frame = 1
Query:  292 MHLAVDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIFPFILVRDCPAYMTFLTDALGAEAVSPPDKAPTGKIMCAQMKINGGIIMVADQCDEDSA--EVAMTISYEIGKDEAAPLAKSFTDNGGEVLQPVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSKADMTKDMEMGAKYDWRYTWVIEDMPTVYCYGAISTSAANGPAISEETNKTLPA 1119
            MHLA+DIGGVALYVEELGNKMDTGAISTPH RLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPK+LARKI PF+ VRDC AYMTF+TDALGAE V PP K PTGKIMCA++KINGGIIMV D C ED++  E +MTIS+E+GKDEA PLAKSF DNGGEVL+ VSMQFWGQVWGRCKDPFGQPWGLCEVQ GP  S  DM KDME+GAKYDWRYTW +EDMPTVYCYGA+STS A GPAISEETNKTLPA
Sbjct:    1 MHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKKLARKIIPFVSVRDCSAYMTFVTDALGAEVVYPPAKDPTGKIMCAELKINGGIIMVGDHCGEDASKTEASMTISHEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAKYDWRYTWAVEDMPTVYCYGAMSTSEATGPAISEETNKTLPA 278          
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: D8LJ96_ECTSI (Glyoxalase family protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ96_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 5.660e-131
Identity = 187/195 (95.90%), Postives = 189/195 (96.92%), Query Frame = 1
Query:    1 MSAMTESATPACPSDGRKHPPTRRGIIVNVMVESADKFVDFMGKTTKAKVNLRLTDGGGYALSRRSRTSYLATPYTHNHRGFPVQEYFRFPDEDGKIMHLAVDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI 585
            MSAMTESATPACPSDGRKHPPTRRGIIVNVMVESADKFVDFMGKTTKAK+  RLTDGGG ALSR SRTSYLA PYTHNHRGFPVQEYFRFPDEDGKIMHLA+DIGGVALYVEELGNKMDTGAISTPHARLHLNTDDP GVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI
Sbjct:    1 MSAMTESATPACPSDGRKHPPTRRGIIVNVMVESADKFVDFMGKTTKAKI-WRLTDGGGDALSRPSRTSYLAAPYTHNHRGFPVQEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPIGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI 194          
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: D8LJ97_ECTSI (AraC family transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ97_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 2.530e-76
Identity = 112/140 (80.00%), Postives = 124/140 (88.57%), Query Frame = 1
Query:  706 MKINGGIIMVADQCDEDSA--EVAMTISYEIGKDEAAPLAKSFTDNGGEVLQPVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSKADMTKDMEMGAKYDWRYTWVIEDMPTVYCYGAISTSAANGPAISEETNKTLPA 1119
            MKINGGI+M+ D C +D++  E +MT+SYE+ KDEA PLAKSF DNGGEVL+ VSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPS  DM KDME+GAKYDW YTWV+EDMPTVYCYGA+STSAAN PAISEET KTLPA
Sbjct:    1 MKINGGIVMLGDHCSKDASKTEASMTVSYEVRKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSNEDMAKDMEIGAKYDWHYTWVVEDMPTVYCYGAMSTSAANTPAISEETKKTLPA 140          
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: UPI001556A403 (VOC family protein n=1 Tax=Pseudoruegeria sp. HB172150 TaxID=2721164 RepID=UPI001556A403)

HSP 1 Score: 73.9 bits (180), Expect = 2.610e-12
Identity = 41/128 (32.03%), Postives = 65/128 (50.78%), Query Frame = 1
Query:  568 ELARKIFPFILVRDCPAYMTFLTDALGAEAVSPPDKAPTGKIMCAQMKINGGIIMVADQCDE---DSAEVAMTISYEIGKDEAAPLAKSFTDNGGEVLQPVSMQFWGQVWGRCKDPFGQPWGLCEVQE 942
            EL R + P++ ++D    ++F   A GAE +  P     GKIM A + IN G IM+ D  +     SA+   +++ ++  D+         + G EV Q   ++FWG  +GR +DPFG  W + E  E
Sbjct:    8 ELMRGVLPYLAIKDAADAISFYKVAFGAEMIGEPYADEQGKIMNASLAINDGTIMLMDNNEAYGIASAKGDRSMTLQLVVDDGTAWWNRALEAGCEVSQEYKLEFWGDYYGRIRDPFGLEWAILEPGE 135          
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: UPI0018693315 (VOC family protein n=1 Tax=Mycolicibacterium baixiangningiae TaxID=2761578 RepID=UPI0018693315)

HSP 1 Score: 73.6 bits (179), Expect = 4.120e-12
Identity = 37/111 (33.33%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  238 RGFPVQEYFRFPDEDGKIMHLAVDIGGVALYVEELGNKMDTGAISTPHA------RLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTI 552
            + F   EY R P++DGK++H A+DI G  + + +   + + G  STP A       +HL   D      + V+ GA  L  + EQFWG  +G+ +DPFG +WS+      +
Sbjct:   27 KAFGATEYGRVPNQDGKLIHAALDINGSMVMLNDDFPEYNDGKPSTPTALGGSPVTIHLQVTDVDTKFQQAVDAGATVLMAVEEQFWGDRYGLLRDPFGHLWSMGQPVREV 137          
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: L0DAF7_SINAD (VOC domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) TaxID=886293 RepID=L0DAF7_SINAD)

HSP 1 Score: 70.1 bits (170), Expect = 8.400e-11
Identity = 45/144 (31.25%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  547 TIEDVPKELARKIFPFILVRDCPAYMTFLTDALGA-EAVSPPDKAPTGKIMCAQMKINGGIIMVADQCDEDSAEVAMTI-----SYEIGKDEAAPLAKSFTDNGGEVLQPVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSK 960
            +++ +PKE    + P++++ D    + F  DALGA EA+   D  P+GK+M A+++ING  IM+AD+  E   +  MTI     S  +  ++           G  + +PV+ QF+G+  G  +DPFG  W +    E  +P +
Sbjct:    2 SVQPIPKEYTT-VTPYLILNDAAKAIAFYLDALGATEAMRLAD--PSGKVMHAEIRINGSPIMLADEFPEMGFKSPMTIGGSPVSLHLYVEDVDAFVDRAVKAGATLTRPVANQFYGERSGGFEDPFGHVWHIATRVEDLSPEE 142          
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: F6EQM7_HOYSD (Conserved protein n=2 Tax=Hoyosella TaxID=697025 RepID=F6EQM7_HOYSD)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-10
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  250 VQEYFRFPDEDGKIMHLAVDIGGVALYVEEL-GNKMDTGAISTPHARLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI 585
             +E  R+ D DG+I+H  V IGGV + V++  G       ++     L L TDD   V  +++EHGA  +  + +QF+G   G   DPFG +W V+  +  +   P E+ R +
Sbjct:   29 AEERCRYTDNDGRIVHSEVVIGGVTVAVKDADGTDPSPDNVNGTPVILALYTDDAKAVADRMMEHGATVIFPVRDQFYGERAGRLADPFGHVWMVAQKSGDLS--PDEIQRTL 139          
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: A0A0F2P6N2_9HYPH (VOC domain-containing protein n=1 Tax=Hoeflea sp. BRH_c9 TaxID=1629712 RepID=A0A0F2P6N2_9HYPH)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-10
Identity = 40/132 (30.30%), Postives = 63/132 (47.73%), Query Frame = 1
Query:  565 KELARKIFPFILVRDCPAYMTFLTDALGAEAVSPPDKAPTGKIMCAQMKINGGIIMVADQCDEDSAEVAMTISY---------EIGKDEAAPLAKSFTDNGGEVLQPVSMQFWGQVWGRCKDPFGQPWGLCE 933
            K L R + P+  V      + F T A GA A   P ++  G+++ A ++INGG++M+ D   E  ++ +   ++         ++  D A          G EVL P  ++FWG  WGR +DPFG  W   E
Sbjct:    8 KRLMRGVIPYATVDGVDKAIEFYTRAFGAVAHGEPVRSEDGRVLNASIEINGGMVMLMDPFPEHGSQPSAGSNFLLQLVIADGDLWWDRAVKA-------GCEVLSPFKLEFWGDRWGRVRDPFGLEWAFNE 132          
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Match: A0A2V9UEF3_9BACT (Glyoxalase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9UEF3_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 3.000e-10
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  550 IEDVPKELARKIFPFILVRDCPAYMTFLTDALGAEAVSPPDKAPTGKIMCAQMKINGGIIMVADQCDEDSAEVAMTIS-YEIGKDEAAPLAKSFTDN----GGEVLQPVSMQFWGQVWGRCKDPFGQPWGL 927
            ++ VP E    + PF+ V+DC   + F   A GA+A     K P+GK+M A++KI   I+M+AD+  +  A    ++    +G     P   +  D     G +V  PV  QFWG  +G+ KDPFG  W +
Sbjct:    3 VKPVP-ECYHTLTPFMTVKDCTRAIEFYQQAFGAQARGVA-KDPSGKVMHAEIKIGDSIVMMADEFPDFGALSPESVGGSSMGLHIYVPDVDAAFDRAVKAGAKVEMPVMDQFWGDRYGKLKDPFGHKWSI 131          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10862.1246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L888_9PHAE3.170e-20777.33VOC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JNL3_9PHAE3.680e-17585.25AraC_E_bind domain-containing protein n=2 Tax=Ecto... [more]
D8LJ96_ECTSI5.660e-13195.90Glyoxalase family protein (Partial) (Fragment) n=1... [more]
D8LJ97_ECTSI2.530e-7680.00AraC family transcriptional regulator n=1 Tax=Ecto... [more]
UPI001556A4032.610e-1232.03VOC family protein n=1 Tax=Pseudoruegeria sp. HB17... [more]
UPI00186933154.120e-1233.33VOC family protein n=1 Tax=Mycolicibacterium baixi... [more]
L0DAF7_SINAD8.400e-1131.25VOC domain-containing protein n=1 Tax=Singulisphae... [more]
F6EQM7_HOYSD1.100e-1032.74Conserved protein n=2 Tax=Hoyosella TaxID=697025 R... [more]
A0A0F2P6N2_9HYPH1.100e-1030.30VOC domain-containing protein n=1 Tax=Hoeflea sp. ... [more]
A0A2V9UEF3_9BACT3.000e-1033.59Glyoxalase n=1 Tax=Acidobacteria bacterium TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10862contigEcto-sp8_S_contig10862:11..4146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score75.1
Seed ortholog evalue7.8e-11
Seed eggNOG ortholog246196.MSMEI_5530
Model size1119
KEGG koko:K04750
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.Glyoxalase bleomycin resistance protein dioxygenase
EggNOG OGs238JY@1762,2IFK2@201174,COG2764@1,COG2764@2
Cds size1119
COG Functional cat.S
Best tax levelMycobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10862.1246.1prot_Ecto-sp8_S_contig10862.1246.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10862 11..4146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143177.5443602-CDS-Ecto-sp8_S_contig10862:10..731681143177.5443602-CDS-Ecto-sp8_S_contig10862:10..73Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10862 11..73 -
1681143177.5528142-CDS-Ecto-sp8_S_contig10862:207..3801681143177.5528142-CDS-Ecto-sp8_S_contig10862:207..380Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10862 208..380 -
1681143177.5600965-CDS-Ecto-sp8_S_contig10862:908..11011681143177.5600965-CDS-Ecto-sp8_S_contig10862:908..1101Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10862 909..1101 -
1681143177.5681396-CDS-Ecto-sp8_S_contig10862:1890..20921681143177.5681396-CDS-Ecto-sp8_S_contig10862:1890..2092Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10862 1891..2092 -
1681143177.5755048-CDS-Ecto-sp8_S_contig10862:2497..27301681143177.5755048-CDS-Ecto-sp8_S_contig10862:2497..2730Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10862 2498..2730 -
1681143177.584515-CDS-Ecto-sp8_S_contig10862:2883..29871681143177.584515-CDS-Ecto-sp8_S_contig10862:2883..2987Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10862 2884..2987 -
1681143177.591904-CDS-Ecto-sp8_S_contig10862:3215..33121681143177.591904-CDS-Ecto-sp8_S_contig10862:3215..3312Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10862 3216..3312 -
1681143177.599094-CDS-Ecto-sp8_S_contig10862:4092..41461681143177.599094-CDS-Ecto-sp8_S_contig10862:4092..4146Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10862 4093..4146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10862.1246.1

>prot_Ecto-sp8_S_contig10862.1246.1 ID=prot_Ecto-sp8_S_contig10862.1246.1|Name=mRNA_Ecto-sp8_S_contig10862.1246.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=373bp
MSAMTESATPACPSDGRKHPPTRRGIIVNVMVESADKFVDFMGKTTKAKV
NLRLTDGGGYALSRRSRTSYLATPYTHNHRGFPVQEYFRFPDEDGKIMHL
AVDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPAGVGAKLVEHGAK
ELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIFPFIL
VRDCPAYMTFLTDALGAEAVSPPDKAPTGKIMCAQMKINGGIIMVADQCD
EDSAEVAMTISYEIGKDEAAPLAKSFTDNGGEVLQPVSMQFWGQVWGRCK
DPFGQPWGLCEVQEGPAPSKADMTKDMEMGAKYDWRYTWVIEDMPTVYCY
GAISTSAANGPAISEETNKTLPA
back to top

mRNA from alignment at Ecto-sp8_S_contig10862:11..4146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10862.1246.1 ID=mRNA_Ecto-sp8_S_contig10862.1246.1|Name=mRNA_Ecto-sp8_S_contig10862.1246.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4136bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10862:11..4146- (Ectocarpus species8 EcLAC_412)
ATGAGCGCAATGACAGAGTCCGCCACACCGGCTTGCCCTTCTGATGGCCG CAAGGTGAGATTTTGCGCTTACATGTGCAACCAACACATATCTGTTTGAC TTCGTTCCTTTTCTATGCCTTCTAAGAGTGAGTGCTTGAGGGGGGGGTGA GTCTTCACCAGCATCCTAAGCTCCGACACAAGAGAGAAAACATGCGCTCC GGAATGTGGTGCGGCTGTCATTAGAGCCAGCTCGATGAACGGCGTCATGT TCCGTGTTCCGTGTGTCGTCGTTTCGTCGCTCGGACAATCTGGTGTACAC CTGTATCTCGAGCAATTCACACACAGCCAATGGTCGTCCATAAACTGCAA GAAGAAGTGGTTGCCCCTTTTCCTACCGGCTAGTTCCAACCCCCCCACCC CGTTGCTACTGGTGTCTCTCGCGCCACGCCTCACTCATACAGACTACAGT ACGTAGGACGCTCATATAGCAGACCTCGCTCCTCGATTTCGTTTCGCGTG TAGCGAAAATATTTGGACCCCGCCACCACCGCACACACGAATTCACCCGC AGTCAAATACATGAACACAACTACGGTCCTCCCCTCTCGTCGGTCATGCC CCTTCGTGAGCATACTCCCACCGCGGTTCATACTGTAGCTTATGACCGCT CGTCTTCTTCATCCCTCCCCTGCGTGTCGTTTCTCCGGCTGCCCCTCACA GAATACTACTGCTGTCCAAGACATTCGATAATTTGGATTGCTTCGCGAAA ATGACAACTTCCTCCCGCGCAATCATCCGTTGTCTGTACGTCTGTCTCTC TCGCTCTCTCTCCCCCTCACGAAACCTTTTGCAGCACCCTCCGACTCGCA GGGGCATCATCGTGAATGTCATGGTCGAGAGCGCGGACAAGTTTGTCGAC TTCATGGGAAAAACCACCAAAGCCAAGGTAAGTTTGAAAAGCTCGTCCGT ACACAAACACTTGGTACGTTTTCGCGGGCTTTCGGCTCAAAATTGTCAGT GGACAGCAGTCAAGTTGTCTATTTGCCCCCTTTTTGGCGGGCTTGTGCCA ACAAATTTGTTCCCCGATGCGAAGAAGATCGACCGACTTGCTGCATCGAC AGGCAGTTGCCATCCCAGTCGATGAAAATCGCAAATAATCGAGTCGGCCT GCTGTATAGATTTGCGCCTGACAGATGGCGGTGGCTATGCTCTTTCGCGG CGGAGCAGAACCTCGTATTTAGCTACACCGTACACACACAATCACCGCGG TTTCCCGGTGCAGGTGAGTAGGCCGCATCACACGTTTTCAGTTGCATCGA AAGGATACAAATCGTTAAACCAACATTGCTGCGTGCGCGCCTGTTGTTCA TGATCCCTCTGCCGCACGCCGCCGCTCCCAACCCCCCCCCCTACCCGCCC TCCCGTCCTTCGTCAGGAGTACTTCCGCTTCCCGGACGAGGACGGCAAGA TCATGCACCTCGCCGTAGACATCGGCGGCGTAGCGCTGTACGTCGAGGAG CTCGGCAACAAGATGGACACCGGCGCCATCAGCACCCCTCACGCCCGCCT GCACCTCAACACCGACGACCCAGCCGGCGTTGGTGCCAAGCTGGTGGAGC ACGGTGCCAAGGAGCTCACCAAGATGGCCGAGCAGTTCTGGGGCGCCACG TGAGTTGCTGATGCTCTCATTAGAATGAATTTCGAGAGATGAAAGGCTTT GTGCCACGGTTCTGTTGTTCTCTTTAGCGAAGAAGGCCCAGTTTGGTATG TTGTATACAACCGGGCGGGTGTTGTTGCATCTTGCGATCGCTCCCTGAGG TGAATGATTGGGGCCCACGGCGGTCTTTTGAAATGTCGGTGGCAGTGCTG ACCCCGCACACGGGCATCCTTTGGCATCCCTTTTACCCCGATATAAACAC AACAGTTCTCTCCGTAAACATGAGTTCGACGACACAGTGCTCAACCATTC CCTTGGTTTGTAGCAAGAACCACGAGAGGTTGCAGCACACTCAGCATCAG CGCAAATATCTTAACTCTCCTTCTCCTTACACCCTCGCTACCCCCCATGA AAAGGTTCGGTGTTTACCAGGATCCGTTCGGTCAGATCTGGTCGGTGTCA AACTCCACCAACACCATCGAGGACGTGCCCAAGGAGCTGGCTCGCAAAAT CTTCCCCTTCATCCTGGTCCGTGACTGCCCCGCCTACATGACCTTCCTCA CGGACGCCCTGGGAGCCGAGGCCGTGTCCCCCCCTGACAAGGCCCCAACC GGCAAGGTTCGTGGACTTGTCAGGTAGTGTGATTTCCTGGACGTCTCTTG GTGTATGAAATCTCATGTGTGTCTTCGACAGGATTGTCGGCACCTCAGCC TCCGTGACAATTCCGTGCGGGAGGTGTTTCAATGCGGAACTCTGGCCGGT CTTACGAAAGCCACATTTGGACACCCAATGAATGAATTACACTTTTTTAT CTTCTTGTCTGAGTCCAACCTGTCAAAACCGTTGGCTTTTTGGAATGGCA CTGAAGTAGAGGCCGAGCTTTCCCTAGTCTGATTGACATTCCAGCCGCTG GAAGTGTGCCGAGGAGGTGCCCAGATAGAAATTGGAAGTTTTTTTTTCGT TACCCCACCCTGGGCGAGCTTTTCGACGGTAGAAATTAACGGCTCTCGTC AAAGGCGACCAGCGGGTGACTCACTGCGGGAATTGTTGATGTTGCAGAAT GTGACGTTAACGTGAAAGTCACGAATCCGATGAAAAAACGTTTGAAAATT GACTTGACCCAGCTAAGTTAGGGAGAAAGACGTACTCTCTTGTTGTTCCC AACGTGGCGTCGAAATCCCGAGGACAATTCCAGGCGCTCCCTGGTCGCCA TGGGGGGTTGGTACCGCCCAATTGTATGACAACAACGTGTTGGTATTGCA CCATGGTCTCACTCACCCACTCTTTCCTCTGCTGCATCTATATTTCCTAA TTTTCGAAAAGTTGTGATTTATTTGTTCCGGCCAGAGCGGCATGTAGCCG GCTTTCTCAACGCTCATATGCTATTGATTTCCTCGACAACCACAGATCAT GTGCGCTCAGATGAAGATCAACGGCGGCATCATCATGGTCGCCGACCAAT GCGACGAAGACAGCGCGGAAGTCGCGATGACCATCTCCTACGAGATCGGG AAGGACGAAGCGGCTCCCCTGGCCAAGTCCTTCACGGACAACGGCGGGGA GGTCCTCCAGCCAGTGTCGATGCAGTTCTGGGGACAAGGTGGGTGGGCAC GAGACGAACCAATCAGGAGGGGGCAGACACGTCTTCGCAGGGTTTCCAGT AGCATCGCTTGGTTGCAGTAGCGCGTGTGTCCCTGTTACCGTGTGTGCTT CCAGATAACAACCGTTTGTGATTCTCTCAGTTTCAACCGCATGTAATTTC TTCTGCTCTTGTTGCGATGGGCGCATGTAGGCGGCTGTGGAGAGATGATA CGTTCGTCTGCCAGTAGGGGAATCAAGGAAGATACCCCAATTTAAGGCGA TTGCCCACTATTCCTACACTCATGTCCTCTCAACGACGTCCGTAACACAC AACAAAAGAGGAAAACAGCTATTTAGAAGAATTGCACGGGAACCACCCCC GCCACGCATGCCAAAGCCCACACCCACTGCCAAACGGTCAGGCCTCACCT GTTCTTCACCCGAAACGTCACGTTCTTCAGCGCTCCATCCGGGTGCATGC CCATCATCACATGCAACGCCCTTGTTATACCGCGTTTTGGTCTCATGTTT TGATGTCGACGTTCAGTGTGGGGTCGGTGCAAAGACCCCTTCGGCCAACC GTGGGGCTTGTGCGAGGTACAGGAGGGGCCTGCTCCTTCCAAGGCAGACA TGACCAAGGACATGGAGATGGGCGCCAAGTACGACTGGCGCTACACCTGG GTGATTGAGGACATGCCTACCGTGTACTGTTACGGAGCGGTGAGAAAGAG CTAACGTCCATGTTCCTGTTGTCATTTCCGTGTCGTTGGCGTTGCTGTTG TCCTCATCTACCTCCGTTGCTCGTGTTTTTTCTTCTTGCCGTCCTAATAA TAATTGACCCCCCCCCCCCGCAGATTTCCACAAGTGCCGCGAACGGCCCC GCCATCAGCGAGGAGACCAACAAGACGCTCCCCGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10862:11..4146-

>mRNA_Ecto-sp8_S_contig10862.1246.1 ID=mRNA_Ecto-sp8_S_contig10862.1246.1|Name=mRNA_Ecto-sp8_S_contig10862.1246.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1119bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10862:11..4146- (Ectocarpus species8 EcLAC_412)
ATGAGCGCAATGACAGAGTCCGCCACACCGGCTTGCCCTTCTGATGGCCG
CAAGCACCCTCCGACTCGCAGGGGCATCATCGTGAATGTCATGGTCGAGA
GCGCGGACAAGTTTGTCGACTTCATGGGAAAAACCACCAAAGCCAAGGTA
AATTTGCGCCTGACAGATGGCGGTGGCTATGCTCTTTCGCGGCGGAGCAG
AACCTCGTATTTAGCTACACCGTACACACACAATCACCGCGGTTTCCCGG
TGCAGGAGTACTTCCGCTTCCCGGACGAGGACGGCAAGATCATGCACCTC
GCCGTAGACATCGGCGGCGTAGCGCTGTACGTCGAGGAGCTCGGCAACAA
GATGGACACCGGCGCCATCAGCACCCCTCACGCCCGCCTGCACCTCAACA
CCGACGACCCAGCCGGCGTTGGTGCCAAGCTGGTGGAGCACGGTGCCAAG
GAGCTCACCAAGATGGCCGAGCAGTTCTGGGGCGCCACGTTCGGTGTTTA
CCAGGATCCGTTCGGTCAGATCTGGTCGGTGTCAAACTCCACCAACACCA
TCGAGGACGTGCCCAAGGAGCTGGCTCGCAAAATCTTCCCCTTCATCCTG
GTCCGTGACTGCCCCGCCTACATGACCTTCCTCACGGACGCCCTGGGAGC
CGAGGCCGTGTCCCCCCCTGACAAGGCCCCAACCGGCAAGATCATGTGCG
CTCAGATGAAGATCAACGGCGGCATCATCATGGTCGCCGACCAATGCGAC
GAAGACAGCGCGGAAGTCGCGATGACCATCTCCTACGAGATCGGGAAGGA
CGAAGCGGCTCCCCTGGCCAAGTCCTTCACGGACAACGGCGGGGAGGTCC
TCCAGCCAGTGTCGATGCAGTTCTGGGGACAAGTGTGGGGTCGGTGCAAA
GACCCCTTCGGCCAACCGTGGGGCTTGTGCGAGGTACAGGAGGGGCCTGC
TCCTTCCAAGGCAGACATGACCAAGGACATGGAGATGGGCGCCAAGTACG
ACTGGCGCTACACCTGGGTGATTGAGGACATGCCTACCGTGTACTGTTAC
GGAGCGATTTCCACAAGTGCCGCGAACGGCCCCGCCATCAGCGAGGAGAC
CAACAAGACGCTCCCCGCC
back to top