mRNA_Ecto-sp8_S_contig1086.1245.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1086.1245.1
Unique NamemRNA_Ecto-sp8_S_contig1086.1245.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1086.1245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1086contigEcto-sp8_S_contig1086:2..1100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size421
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143177.498016-UTR-Ecto-sp8_S_contig1086:1..791681143177.498016-UTR-Ecto-sp8_S_contig1086:1..79Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1086 2..79 +
1681143177.5136192-UTR-Ecto-sp8_S_contig1086:241..3021681143177.5136192-UTR-Ecto-sp8_S_contig1086:241..302Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1086 242..302 +
1681143177.522156-UTR-Ecto-sp8_S_contig1086:980..11001681143177.522156-UTR-Ecto-sp8_S_contig1086:980..1100Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1086 981..1100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143177.506203-CDS-Ecto-sp8_S_contig1086:79..2411681143177.506203-CDS-Ecto-sp8_S_contig1086:79..241Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1086 80..241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1086.1245.1prot_Ecto-sp8_S_contig1086.1245.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1086 80..241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1086.1245.1

>prot_Ecto-sp8_S_contig1086.1245.1 ID=prot_Ecto-sp8_S_contig1086.1245.1|Name=mRNA_Ecto-sp8_S_contig1086.1245.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
MSLRCPHAASACVGHSLSPLSVVRLSYGSNTSHQRDFLVTGHKHGHTRQT
LRL*
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mRNA from alignment at Ecto-sp8_S_contig1086:2..1100+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1086.1245.1 ID=mRNA_Ecto-sp8_S_contig1086.1245.1|Name=mRNA_Ecto-sp8_S_contig1086.1245.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1099bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1086:2..1100+ (Ectocarpus species8 EcLAC_412)
ATGTAGGAAGGATCTGAGGACGGTTCTGTGTTCCGTAGATGAAGGGACCT
GCTGTGGTACCTGTTGTGGTAGACTTGGATGAGTCTACGGTGCCCCCATG
CTGCGTCAGCCTGTGTTGGGCACTCTCTTTCTCCTCTGTCTGTCGTGCGT
TTGTCCTACGGATCTAACACAAGCCATCAACGAGACTTTCTAGTCACTGG
ACACAAACACGGGCATACCCGGCAAACACTCCGGCTCTAGGAGTGATCAA
CATCTCGCCCCACGGTCCCCGAACGCAGCGGCGTCACCATGTGGACCCAA
GGTGAGAGACGATCAGTTCCCAGCGATTTACGATTTCTGATTGCGATGCC
TTCCCTACCCTGCTTGATTTACGCCGTCTCATCTATCAACATGGAGTGCG
CCGACGCTCTTTCTTTCCCACCACAAGTCCGCCTTCCGTCATGTTTTCAA
AATGGTTACCGAACCCACAAGAAAAGCGTAGGATCGCTCTTGCAAGCACA
AAATTAGTGGGCTATGTTGTGCGTGTCATTTTAAAGCTGATTCTAGGCGA
ACAGAGTGACAAAGTGACGAATGAGTGTGCGAGCAGGAGACAGAGACATT
GCGGGTTTGCGAAGTGGTCACGGGTAGATTGCAGGGGTGGTAGGGGGGGT
GCTGAAAGGGCTCTCGTAAGCAGACGAACTAGCACGCATGTTCCCGCTCA
AACCATCCAACACGCCTCCCGAGGGGTTTCCAGTTTTGATCGCTATCGCC
TCACCCCCTCAACACTCTCCAAATATTCACCCTTCTCCGTGGATCGGACG
CCAAAAGAATGAACTCTGTCATTTGTGTGACTCGAAAAGGGAAGGTAAGT
ATCTCTCGATGAACACATGGGGTTGTCAATTGCGAACACCGAGAGAAAAT
AGAGTTATGCAGAACTGATTCTCACGGGCATTCACGTACGCCGTTGGCAT
ACTCTTCGCGCTCTCACCCGTCCGTGCAGACTACCCGAGAGCCGAGGAGA
CGCACTATTGTCGTCGACAACGATGGTGGCTATGATAGCGACTTCAGTCC
TTCGGAGGAGGGAAGGGAGCACGAGGGAGGTGATTGTAGGTACAATGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1086:2..1100+

>mRNA_Ecto-sp8_S_contig1086.1245.1 ID=mRNA_Ecto-sp8_S_contig1086.1245.1|Name=mRNA_Ecto-sp8_S_contig1086.1245.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1086:2..1100+ (Ectocarpus species8 EcLAC_412)
ATGAGTCTACGGTGCCCCCATGCTGCGTCAGCCTGTGTTGGGCACTCTCT
TTCTCCTCTGTCTGTCGTGCGTTTGTCCTACGGATCTAACACAAGCCATC
AACGAGACTTTCTAGTCACTGGACACAAACACGGGCATACCCGGCAAACA
CTCCGGCTCTAG
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