mRNA_Ecto-sp8_S_contig10852.1237.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10852.1237.1
Unique NamemRNA_Ecto-sp8_S_contig10852.1237.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: A0A6H5KFT2_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT2_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.670e-61
Identity = 103/128 (80.47%), Postives = 107/128 (83.59%), Query Frame = 1
Query:    1 LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYYPSFDAKLPVTAPRDDST--------------TEERVAREPRETLGPYNTLLDLRNKQRGGDAAAATAVDEDDASFGQYLARKWGAVFRE 342
            LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTS VFFYYPSFDAKLPV APRD S+              TE++V REPRE  GPYNTLLDLRNKQR GDAAAA+AVDEDDASFGQYLARKWGAVFRE
Sbjct:  315 LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSFVFFYYPSFDAKLPVVAPRDASSSAGATPTNPAAAAATEKQVPREPREAFGPYNTLLDLRNKQRDGDAAAASAVDEDDASFGQYLARKWGAVFRE 442          
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: A0A507EEJ9_9FUNG (Fe2OG dioxygenase domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EEJ9_9FUNG)

HSP 1 Score: 87.4 bits (215), Expect = 4.750e-18
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    4 VFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYYPSFDAKLPVTAPRDDSTTEERVAREPRETLGPYNTLLDLRNKQRGGDAAAATAVDEDDASFGQYLARKWGAVFRE 342
            + N GDYLSL++ GR+KSP+H+VVT+  ER S+VFFYYP+++AK+P+     DS T  R++            L   ++K          +  E   SFG+Y+A KW  VFR+
Sbjct:  254 IVNAGDYLSLMTRGRVKSPLHRVVTSDKERLSLVFFYYPTYEAKIPMM--EKDSETASRIS------------LFVDQSKSTSSAEQQTLSSAETIGSFGEYIANKWSQVFRD 352          
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: D7G0Y4_ECTSI (Putative oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y4_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.350e-17
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYYPSFDAKLPVTAPRDDSTTEERVAREPRET 204
            LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYY S  A  P       +TT      +P++T
Sbjct:  206 LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYY-SIPASTPSYPSPLRATTRVPAQEQPQQT 272          
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: A0A015JYT7_RHIIW (Fe2OG dioxygenase domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015JYT7_RHIIW)

HSP 1 Score: 79.3 bits (194), Expect = 1.620e-15
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 LVFNCGDYLSLLSNGRLKSPVHQVVTTGV-ERTSVVFFYYPSFDAKLPVTAPRDDSTTEERVAREPRETLGPYNTLLDLRNKQRGGDAAAATAVDEDDASFGQYLARKWGAVFRE 342
            +V NCGDYLSL+++G+  SP+H+V+  G  ER S V FYYPS+DAK+P+      +  EE      +E      ++   +        A A   D+ D  FG+Y+A KW  VFR+
Sbjct:  155 IVVNCGDYLSLITHGKYISPLHRVINDGTNERYSAVLFYYPSYDAKIPLIG----NNEEEEFDLSKKEL-----SIFKDQTAHCKESNAKARRYDKKDTCFGEYIAYKWDQVFRD 260          
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: A0A3R7A3I1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A3I1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.820e-15
Identity = 50/113 (44.25%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    1 LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYYPSFDAKLPVTAPRDDSTTEERVAREPRETLGPYNTLLDLRNKQRGGDAAAATAVDEDDASFGQYLARKWGAVFR 339
            L  N GDYLSLL+ G  KSPVH+VV    ERTS+VFFYYP FDAK+P       +TT  R   +    L  +NTLLD   +              D A FG+Y+  KW  V R
Sbjct:   97 LFVNGGDYLSLLTEGLWKSPVHRVVNYD-ERTSLVFFYYPDFDAKIP------PATTPTRHQEQ---NLDTFNTLLDNTYQP-----------SSDQAPFGEYIVSKWADVQR 188          
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: W4G2V6_9STRA (Fe2OG dioxygenase domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2V6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.100e-14
Identity = 50/114 (43.86%), Postives = 60/114 (52.63%), Query Frame = 1
Query:    1 LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYYPSFDAKLP-VTAPRDDSTTEERVAREPRETLGPYNTLLDLRNKQRGGDAAAATAVDEDDASFGQYLARKWGAVFR 339
            L  N GDYLSLL+ G  KSPVH+VV    ER S+VFFYYP FDAK+P VT P           R   + L  +NTLLD  ++              D A FG+Y+  KW  V R
Sbjct:  262 LFVNGGDYLSLLTEGLWKSPVHRVVNYD-ERMSLVFFYYPDFDAKIPPVTTP----------TRHQEQNLDTFNTLLDNTHQP-----------SSDQAPFGEYIVSKWADVQR 353          
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: K3WDL2_GLOUD (Fe2OG dioxygenase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDL2_GLOUD)

HSP 1 Score: 77.8 bits (190), Expect = 1.320e-14
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    1 LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYYPSFDAKLPVTAPRDDSTTEERVAREPRETLGPYNTLLDLRNKQRGGDAAAATAVDEDDASFGQYLARKWGAVFR 339
            +V N GDYLSL++NG+  SP+H+VV    ER S+VFFYYP FDA +P       S  ++R+     + +  +N LLD               V + D  FG Y+  KW  V R
Sbjct:  240 IVANAGDYLSLITNGKCVSPIHRVVAADRERYSMVFFYYPDFDAVIP-------SLQQDRIGGNRGDQVQSFNNLLD-------------GTVKKVDGCFGDYIMAKWAGVQR 332          
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: A0A0L0HJP3_SPIPD (Fe2OG dioxygenase domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HJP3_SPIPD)

HSP 1 Score: 78.2 bits (191), Expect = 1.330e-14
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   10 NCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYYPSFDAKLPVTAPRDDSTTEERVAREPRETLGPYNTLLDLRNKQRGGDAAAATAVDEDDASFGQYLARKWGAVFR 339
            N GDYLSLL+NGR+ SP+H+VV++  ER S+VFFYYP +DA++P+        TE+  A      +          + ++  +  A  A +    +FG Y+  KWG V+R
Sbjct:  283 NAGDYLSLLTNGRVVSPLHRVVSSDQERLSMVFFYYPRYDAQIPLL-------TEDGPAARISLFIDQSQNTPRANDNEKEKEQLAIRAEEISKMAFGDYIFSKWGQVYR 385          
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: A0A067CF38_SAPPC (Fe2OG dioxygenase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CF38_SAPPC)

HSP 1 Score: 77.4 bits (189), Expect = 1.770e-14
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 LVFNCGDYLSLLSNGRLKSPVHQVVT--TGVERTSVVFFYYPSFDAKLPVTAPRDDSTTEERVAREPRETLGPYNTLLDLRNKQRGGDAAAATAVDEDDASFGQYLARKWGAVFR 339
            +V N GDYLSLL+ G+  SP+H+VV+  T  ER S+VFFYYP +DA++P    +  S T+  +A+E        NTL+D              ++D +  SFG+Y+A KW  V R
Sbjct:  231 IVVNGGDYLSLLTKGKWVSPIHRVVSENTSEERYSMVFFYYPDYDARIP----KPQSATKTAIAQEA--ITSTLNTLVD-------------GSLDLEKTSFGEYIASKWAHVQR 326          
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Match: A0A397TNI1_9GLOM (Fe2OG dioxygenase domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TNI1_9GLOM)

HSP 1 Score: 77.4 bits (189), Expect = 2.040e-14
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 LVFNCGDYLSLLSNGRLKSPVHQVVTTGV-ERTSVVFFYYPSFDAKLPVTAPRDDSTTEERVAREPRETLGPYNTLLDLRNKQ--RGGDAAAATAVDEDDASFGQYLARKWGAVFREK 345
            ++ NCGDYLSL++ G+  SP+H+V+  G  ER S V FYYPS+DAK+P+     D+  EE             N  L +   Q     ++ A   + + +  FG+Y+A KW  VFR++
Sbjct:  241 IIVNCGDYLSLITRGKYISPLHRVINDGTNERYSTVLFYYPSYDAKIPLI----DNKEEEEFE---------LNKRLSIFKDQAVHCNESNAKARMYDKNTCFGEYIAYKWDQVFRDE 345          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10852.1237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFT2_9PHAE2.670e-6180.47Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A507EEJ9_9FUNG4.750e-1839.82Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
D7G0Y4_ECTSI2.350e-1767.65Putative oxidoreductase n=1 Tax=Ectocarpus silicul... [more]
A0A015JYT7_RHIIW1.620e-1538.26Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]
A0A3R7A3I1_9STRA1.820e-1544.25Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
W4G2V6_9STRA1.100e-1443.86Fe2OG dioxygenase domain-containing protein n=6 Ta... [more]
K3WDL2_GLOUD1.320e-1438.05Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A0L0HJP3_SPIPD1.330e-1437.27Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A067CF38_SAPPC1.770e-1440.00Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A397TNI1_9GLOM2.040e-1436.44Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10852contigEcto-sp8_S_contig10852:7..840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score88.2
Seed ortholog evalue2.8e-15
Seed eggNOG ortholog2880.D7G0Y4
Model size348
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGsCOG3491@1,KOG0143@2759
Cds size348
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143177.0229633-CDS-Ecto-sp8_S_contig10852:6..591681143177.0229633-CDS-Ecto-sp8_S_contig10852:6..59Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10852 7..59 +
1681143177.0316176-CDS-Ecto-sp8_S_contig10852:482..5951681143177.0316176-CDS-Ecto-sp8_S_contig10852:482..595Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10852 483..595 +
1681143177.0394475-CDS-Ecto-sp8_S_contig10852:658..8401681143177.0394475-CDS-Ecto-sp8_S_contig10852:658..840Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10852 659..840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10852.1237.1prot_Ecto-sp8_S_contig10852.1237.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10852 7..840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10852.1237.1

>prot_Ecto-sp8_S_contig10852.1237.1 ID=prot_Ecto-sp8_S_contig10852.1237.1|Name=mRNA_Ecto-sp8_S_contig10852.1237.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp
LVFNCGDYLSLLSNGRLKSPVHQVVTTGVERTSVVFFYYPSFDAKLPVTA
PRDDSTTEERVAREPRETLGPYNTLLDLRNKQRGGDAAAATAVDEDDASF
GQYLARKWGAVFREK*
back to top

mRNA from alignment at Ecto-sp8_S_contig10852:7..840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10852.1237.1 ID=mRNA_Ecto-sp8_S_contig10852.1237.1|Name=mRNA_Ecto-sp8_S_contig10852.1237.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=834bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10852:7..840+ (Ectocarpus species8 EcLAC_412)
CTGGTGTTCAACTGTGGCGACTACCTTTCGCTTCTGAGCAACGGCCGCTT GAAGTGAGTCTGGTGATTTTAGGTGGTACGCTAGCATGGACTTTTGCCGG CAAAACGTTTCGATCCACCTGTAGTTTTTTTCAGAATAGTTCCTGTGCCA GAGAGCTTATCCTGAAACTGGAACTGGAACCGGAACCAGCACCTAGGACA TTGGGGCCGTTTTAACAAAGGTGCGCCGGTCTGTTGGTTATTGGTACGCT CGCTTTTTACACCACACCGATGTCAATGCATTGTCGCGAAGGCAAGTAAG TACTAGTGTTTTTTTGCTGTGTTGTGCCGGATCATGAGGAGCACCGTCGT GGTTAATTCGTTTGGGTTCGGTGCCGGTGGAACTTGTGCAGCCTCTCGCT CTAGTAAGCTCGAAACGACATATCACTGCACGTGTTTCCCCCTCTTATAT CGACACCGGGGACGCGTGTGAGCCAGGTCTCCGGTGCACCAGGTGGTGAC GACCGGCGTCGAGCGGACATCGGTCGTGTTCTTCTACTACCCCAGCTTCG ACGCCAAGCTACCCGTCACCGCTCCGCGCGACGACTCGAGTTCCAGCGCA GGAGCAACCTCAACAAACCCGGCAGCGGCGGCGGTTGCGGCGACAGCGGC AGCGACGGAGGAGCGGGTCGCGCGCGAGCCGCGGGAGACACTCGGGCCGT ACAACACCTTGCTGGACCTCCGCAATAAGCAGCGGGGTGGCGACGCTGCA GCAGCAACAGCCGTAGATGAGGACGATGCATCCTTCGGGCAGTACCTCGC CAGAAAGTGGGGAGCTGTCTTCCGAGAAAAATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10852:7..840+

>mRNA_Ecto-sp8_S_contig10852.1237.1 ID=mRNA_Ecto-sp8_S_contig10852.1237.1|Name=mRNA_Ecto-sp8_S_contig10852.1237.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10852:7..840+ (Ectocarpus species8 EcLAC_412)
CTGGTGTTCAACTGTGGCGACTACCTTTCGCTTCTGAGCAACGGCCGCTT
GAAGTCTCCGGTGCACCAGGTGGTGACGACCGGCGTCGAGCGGACATCGG
TCGTGTTCTTCTACTACCCCAGCTTCGACGCCAAGCTACCCGTCACCGCT
CCGCGCGACGACTCGACGACGGAGGAGCGGGTCGCGCGCGAGCCGCGGGA
GACACTCGGGCCGTACAACACCTTGCTGGACCTCCGCAATAAGCAGCGGG
GTGGCGACGCTGCAGCAGCAACAGCCGTAGATGAGGACGATGCATCCTTC
GGGCAGTACCTCGCCAGAAAGTGGGGAGCTGTCTTCCGAGAAAAATAA
back to top