mRNA_Ecto-sp8_S_contig10851.1236.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10851.1236.1
Unique NamemRNA_Ecto-sp8_S_contig10851.1236.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10851.1236.1 vs. uniprot
Match: D7FYR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR9_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 9.110e-140
Identity = 236/294 (80.27%), Postives = 246/294 (83.67%), Query Frame = 2 
Query:   59 WYYCLGGSRVEQ--CGPFG------------SLDLAKSHAAEAMSGIADDPSNEFGTKRPRGAENEGATRKANDATTGSGXXXXXXXXXXXXXE--------STAADRVHVEVSHILLSMRSGSAREGSGASPPTEQDDLLSTWSMSAPAVFASLVSPAPERDTTAELLELIGQSGDTDDLLDAVCFGSSRPPQTISLEDWNLINVRRGTMSASSDVVPGITDPDPKGALEEGGGNPYGISAEMLELCSGKILDCGAAGSSTACPAAATTTSSGMAITVAFPDGDKTLLDWKSF 874
            W+ C     VE   CGP              SLDLAKSHAAEAMSGIADDPS+E G KRPRGAENEGATRKANDATTGS XXXXXXXXXXXXX         +TAADRV VEVSHILLSMR GSAREG GASPPTEQDDLLSTWSMSAPAVFASLVS  PERDTTAELLELIGQSGDTDDLLDAVCFGSSRPPQ IS EDWNL++ +RGTMSASSDVV G TDPDPKGAL+EGGGNPYGISAEMLELCSGKILDCGA+GSSTACPAAATT +SG+ ITVAFPDGDK LLDWKSF
Sbjct:   32 WHVCCWRRAVEDGSCGPKSPYILAHTSHHPLSLDLAKSHAAEAMSGIADDPSSEIGIKRPRGAENEGATRKANDATTGSXXXXXXXXXXXXXXXXXXXXXXXNTAADRVDVEVSHILLSMRRGSAREGCGASPPTEQDDLLSTWSMSAPAVFASLVSAKPERDTTAELLELIGQSGDTDDLLDAVCFGSSRPPQNISFEDWNLMDAQRGTMSASSDVVQGATDPDPKGALDEGGGNPYGISAEMLELCSGKILDCGASGSSTACPAAATTITSGIVITVAFPDGDKILLDWKSF 325
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BLAST of mRNA_Ecto-sp8_S_contig10851.1236.1 vs. uniprot
Match: D7G439_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G439_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 2.320e-64
Identity = 139/209 (66.51%), Postives = 159/209 (76.08%), Query Frame = 2 
Query:  110 SLDLAKSHAAEAMSGIADDPSNEFGTKRPRGAENEGATRKANDATTGSGXXXXXXXXXXXXXESTAADRVHVEVSHILLSMRSGSAREGSGASPPTEQDDLLSTWSMSAPAVFASLVSPAPERDTTAELLELIGQSGDTDDLLDAVCFGSSRPP-QTISLEDWNLINVRRGTMSASSDVVPGITDPDPKGALEEGGGNPYGISAEMLEL 733
            SLD+AKSH ++ MSGIA D            AENEGAT K NDATTG GXXXXXXXXXXXXX +T AD++ VE +H LL+MRSGSA E SGAS  T+QD+L+S+WS SAPAVF SLVSPAPE D TAELLELIG+SG++D LLDA+ FGSS PP QT+S EDW  + +R   MS SSDVVPGITDP P   LEEG GNPYGISAE+  L
Sbjct:   49 SLDMAKSHTSDGMSGIAGD------------AENEGATTKPNDATTG-GXXXXXXXXXXXXXXNTVADKIDVEAAHTLLAMRSGSAGEASGASSLTQQDELMSSWSTSAPAVFPSLVSPAPEGDATAELLELIGKSGNSDYLLDALYFGSSPPPLQTMSTEDWMDVCIREA-MSTSSDVVPGITDPGP--TLEEGRGNPYGISAEIERL 241
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BLAST of mRNA_Ecto-sp8_S_contig10851.1236.1 vs. uniprot
Match: A0A6H5K7I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.930e-45
Identity = 102/188 (54.26%), Postives = 107/188 (56.91%), Query Frame = 2 
Query:  308 ADRVHVEVSHILLSMRSGSAREGSGASPPTEQDDLLSTWSMSAPAVFASLVSPAPERDTTAELLELIGQSGDTDDLLDAVCFGSSRPPQTISLEDWNLINVRRGTMSASSDVVPGITDPDPKGALEEGGGNPYGISAEMLELCSGKILDCGAAGSSTACPAAATTTSSGMAITVAFPDGDKTLLDWKS 871
            ADR+ VEVS ILLS R+G A EGSGAS  TE DDL+STWS SAPAVF SLVSPAPE D TAELLE +                                                       GALEEGGGNP GISAEML LCSG IL C  A SSTACPAAAT  S   A TVAFPDGD+TLLDWKS
Sbjct:   19 ADRIDVEVSRILLSRRNGRAGEGSGASSLTELDDLMSTWSTSAPAVFPSLVSPAPEGDATAELLEAMS------------------------------------------------------GALEEGGGNPCGISAEMLHLCSGTILHCKPASSSTACPAAATXXSCEKASTVAFPDGDQTLLDWKS 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10851.1236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYR9_ECTSI9.110e-14080.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G439_ECTSI2.320e-6466.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7I0_9PHAE2.930e-4554.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10851contigEcto-sp8_S_contig10851:2669..6008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size975
Hectar predicted targeting categoryother localisation
Exons4
Cds size744
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10851.1236.1prot_Ecto-sp8_S_contig10851.1236.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10851 2755..5667 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.9496956-UTR-Ecto-sp8_S_contig10851:2668..27541681143176.9496956-UTR-Ecto-sp8_S_contig10851:2668..2754Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10851 2669..2754 -
1681143176.987063-UTR-Ecto-sp8_S_contig10851:5667..57011681143176.987063-UTR-Ecto-sp8_S_contig10851:5667..5701Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10851 5668..5701 -
1681143176.9965854-UTR-Ecto-sp8_S_contig10851:5897..60081681143176.9965854-UTR-Ecto-sp8_S_contig10851:5897..6008Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10851 5898..6008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.959331-CDS-Ecto-sp8_S_contig10851:2754..31411681143176.959331-CDS-Ecto-sp8_S_contig10851:2754..3141Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10851 2755..3141 -
1681143176.9683611-CDS-Ecto-sp8_S_contig10851:5040..53131681143176.9683611-CDS-Ecto-sp8_S_contig10851:5040..5313Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10851 5041..5313 -
1681143176.9777641-CDS-Ecto-sp8_S_contig10851:5583..56671681143176.9777641-CDS-Ecto-sp8_S_contig10851:5583..5667Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10851 5584..5667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10851.1236.1

>prot_Ecto-sp8_S_contig10851.1236.1 ID=prot_Ecto-sp8_S_contig10851.1236.1|Name=mRNA_Ecto-sp8_S_contig10851.1236.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=248bp
MSGIADDPSNEFGTKRPRGAENEGATRKANDATTGSGGGEGGSGSGGGGG
ESTAADRVHVEVSHILLSMRSGSAREGSGASPPTEQDDLLSTWSMSAPAV
FASLVSPAPERDTTAELLELIGQSGDTDDLLDAVCFGSSRPPQTISLEDW
NLINVRRGTMSASSDVVPGITDPDPKGALEEGGGNPYGISAEMLELCSGK
ILDCGAAGSSTACPAAATTTSSGMAITVAFPDGDKTLLDWKSFCQVM*
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mRNA from alignment at Ecto-sp8_S_contig10851:2669..6008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10851.1236.1 ID=mRNA_Ecto-sp8_S_contig10851.1236.1|Name=mRNA_Ecto-sp8_S_contig10851.1236.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3340bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10851:2669..6008- (Ectocarpus species8 EcLAC_412)
CAGCCAAGGCGATCGCTTCAAGTACTTTGGCGAGGCGAATAGTCATCAGC
CTCATGGTTGGTATTATTGTTTGGGTGGTTCCCGAGTGGAACAATGTGGC
CCCTTCGGGAGGTGAGCGCTCGGTTGGTAAGATCTTGTCACCGGTTCGTG
GTTTGATTTGTGTAGGACCCCCGGGAGGATAACCCCGATGCAGCACCTCT
TGGTTGATGCTTGTTTGGTTTCTCGCAGAATGATTTCGTCGGCCATTGTC
TGAATATCCGCTGACGATTGCTGCACGCGCCTCGTTGCCCGACTGAATGA
CAAACAGTCTGGACCTGGCCAAGAGCCACGCGGCCGAGGCGATGAGCGGG
ATCGCCGATGACCCATCGAACGAATTTGGTACCAAGCGCCCGAGAGGCGC
AGAGAACGAGGGAGCCACGAGAAAGGTATAGGCCACTCCCTCGCGGCAAC
TGCATAGCGCCGTTGCTCGTCTTATTCTTCGTGTGTCACGTCTTGATTCT
TGAATCCTGTGCCCTTGCGGTGCTCCTTTGAAGGCTATGCCCATGTTGGG
GTCTGCGCCCAACCGTTCCACACATGGTGAGGCACGCGTTCGCCGTAGGC
CCTCCTCCTTGCGGTAGATTCACTCGCATCGTTCGTGTGACATTCCAATC
TCGGGACCTCTCTCTTGCGCGTGCCTCTCTGCTATTCTGGGCCAGGCGAA
CGACGCGACCACCGGCAGCGGCGGCGGCGAGGGCGGCAGCGGCAGCGGGG
GCGGGGGCGGGGAAAGCACGGCAGCCGACAGGGTCCACGTCGAGGTGTCC
CACATCCTGCTTTCAATGCGTAGCGGGAGTGCCCGTGAGGGAAGCGGGGC
CAGCCCTCCCACCGAACAGGACGACCTGTTGTCCACCTGGTCAATGTCAG
CACCAGCGGTGTTTGCCTCGTTGGTGAGCCCTGCGCCAGAACGGGACACA
ACAGCGGAGCTCCTGGAGGTAAGCGGGTGCACGTGTAGCGCACGGTCTGA
TCTGAGGTTTTCTGCTTGAAGTGAGGACAACTTCGATGCTTGGTGTTGTG
TGGGCGTTGCTTTTTATTTCCGAGGTCTGCAAAGCCGTCGAGGCGGGACG
CATGTGTTTCGGCATTGAGCTGGACTCGTTGTGTGTATGTGTTGTTGCCG
CTGCTATGACTGCGGCAGTAGTTGCTCACGTCCGCTCTTGTTAGATCGCT
CACTTGCCCGCGACCACAGCGATGCCAGGGCTTTCGGAAATTCCGGTACT
ATCAATACTGCTTCGGGTAGGACCACACAAGATTCTCAACACCCTCCGTT
AACATTTGGGTCTCGCTTCACTTTTTTTTCATTATTTTGTGGCCAAAAAC
AAACTAACGGGGAGAGAGTGCGGGAGAGAGAGACAGAAGTGCAGCAAAAA
GAGACAAGTGTACTTCGGTAGACGCAACAACTATCTCCACCCATAGGCCA
TGAGGGCAACCCGCGACAGGATGGTGGGCACAGGCAGGGTCATAGAAGGG
TTGATGCGATGGTTTTTGTACTTAAGTACTTCTCTGTCCAATGTGAGCCC
TGCCGGCTCACTGCAGCTCCTGTGATTTTCCTACAATTCCCACAAGCACG
CAAGCACAGCAGCACACACCTACCTTTGCATCAATGGTTGTCTAGGTTCG
GGCGAGGTTATGTGGGGCTGTAATGATGGTGTTGTCTATACTACAACTAT
GTTGGACTCGTCTCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGTGTA
GTATGCATATAGCTGCTGACACGATGACTGCTGGATCTTGGGAGTATACG
ATTTTCAAATTTGGAGAACATGCAGCATATACCACGATATCCTGGCCTGG
TTGGGCTTGTATTGCCCCCTTTTGCTGCCTCCGCCCTTTGCTTCAATGGC
TTCCTAGGTTCAGGCGAGGTCATGTACGTGGAGTTGTTGATGTGTGTCTC
TGTGAAGGATATGGGGAGAGGTTCGTTGTGGCGTTCGCATTTAGCGCATT
GTGCAGTTTTCGAATTTTGGTACCGTTCCAGCGACCTTGATCTTACCCGC
GGTACTAATGTCTTTTCATGTGTCGCTGGGTAGCGCGGTCGATGCTAATC
ATAAAGACATACCTACCTATGGACTCGCCAACGCCTGGCGTGGAGGGATA
CAGGTCGGCAACTCCATGGCATGCCACCACACCAGCATTTCCAAATGATC
GATCAAGGATCTGTCAGGACGTCTGTAGACCCAAAAGGGTTAACCGACAA
TACAAATTTGCTTCATGGAACCATTGTGGTTGACGTTTGAACTGTTGCAG
TTTTGACGTCCGAGCTCTTGCGTTTCTTTTCTTGCCCATATTAATGTGAG
CAGAACTCGTGGATAGGGACTACGGTGGTTTACTATCAATCAAAAGAGGA
CGCGCCACCACCTATGATCCTCTTACTTTGCCCCAGGCCCGCGGCTTACT
TCCTCTGTGGGGTGCTGTGGCCCAGTACTGTAGTAGCGACGAATAGAGGT
TTAGTCTATTGGCATGATTCTTAACTGTACACCTGTCCATATGGTCAAAG
TCTTCCGTGGTACTGTACATTGTTGTATCCAGAATTTCTTGATCTCACGT
GCTTGAAGTAATGGTGTCCCTCTAGCTCTCCCCGCCCACGCAAGGAACAT
GTTGATCGTGAATCAACCTTGTTCGTCCGATGTTGTTTGACCCTCGAATC
GACTGATCCGTGGTGGTCTCAGGTGCAACTGGACCTTGCCGATGTCGTGA
GGACACGTTCATGTGCAGTAGTTCCTGTTTTCCACGCCTTCTCCCACCTC
AACGGCTGATGAATCCCTTGCTTCCTCGTGCTCTCCTTCGTTTCGATATG
TCCCACACCCACCCCAGCTCATCGGCCAGTCGGGAGACACGGACGACCTC
CTGGATGCCGTCTGTTTCGGCAGCTCTCGCCCCCCCCAGACCATCAGCTT
GGAGGACTGGAACCTTATAAACGTACGACGGGGTACGATGTCGGCATCTT
CCGATGTTGTGCCGGGGATCACGGACCCTGACCCCAAAGGAGCCTTGGAG
GAGGGTGGGGGAAACCCCTACGGCATCTCGGCGGAGATGCTCGAACTATG
CTCGGGGAAGATCCTCGATTGTGGCGCAGCCGGTTCTTCGACTGCCTGCC
CCGCCGCAGCCACCACCACGAGCAGCGGCATGGCCATTACTGTGGCTTTT
CCCGACGGGGACAAGACACTACTCGACTGGAAATCATTTTGTCAAGTGAT
GTAGTGGGCCCCGCCCATGTTTTTCGGTGCTGTAATCAGTGAGCGGTTGT
AGAGTTCATGGGATGGCGTTAATCTGTTATTGAGTTGGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10851:2669..6008-

>mRNA_Ecto-sp8_S_contig10851.1236.1 ID=mRNA_Ecto-sp8_S_contig10851.1236.1|Name=mRNA_Ecto-sp8_S_contig10851.1236.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10851:2669..6008- (Ectocarpus species8 EcLAC_412)
ATGAGCGGGATCGCCGATGACCCATCGAACGAATTTGGTACCAAGCGCCC
GAGAGGCGCAGAGAACGAGGGAGCCACGAGAAAGGCGAACGACGCGACCA
CCGGCAGCGGCGGCGGCGAGGGCGGCAGCGGCAGCGGGGGCGGGGGCGGG
GAAAGCACGGCAGCCGACAGGGTCCACGTCGAGGTGTCCCACATCCTGCT
TTCAATGCGTAGCGGGAGTGCCCGTGAGGGAAGCGGGGCCAGCCCTCCCA
CCGAACAGGACGACCTGTTGTCCACCTGGTCAATGTCAGCACCAGCGGTG
TTTGCCTCGTTGGTGAGCCCTGCGCCAGAACGGGACACAACAGCGGAGCT
CCTGGAGCTCATCGGCCAGTCGGGAGACACGGACGACCTCCTGGATGCCG
TCTGTTTCGGCAGCTCTCGCCCCCCCCAGACCATCAGCTTGGAGGACTGG
AACCTTATAAACGTACGACGGGGTACGATGTCGGCATCTTCCGATGTTGT
GCCGGGGATCACGGACCCTGACCCCAAAGGAGCCTTGGAGGAGGGTGGGG
GAAACCCCTACGGCATCTCGGCGGAGATGCTCGAACTATGCTCGGGGAAG
ATCCTCGATTGTGGCGCAGCCGGTTCTTCGACTGCCTGCCCCGCCGCAGC
CACCACCACGAGCAGCGGCATGGCCATTACTGTGGCTTTTCCCGACGGGG
ACAAGACACTACTCGACTGGAAATCATTTTGTCAAGTGATGTAG
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