mRNA_Ecto-sp8_S_contig1085.1235.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1085.1235.1
Unique NamemRNA_Ecto-sp8_S_contig1085.1235.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: D7FU50_ECTSI (CBF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU50_ECTSI)

HSP 1 Score: 512 bits (1319), Expect = 5.600e-170
Identity = 269/292 (92.12%), Postives = 271/292 (92.81%), Query Frame = 1 
Query:   37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMR 912
            R   +AFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVT DMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPL SSD  A      XXXXX     AADEYDPGCE+TKGAGAM TSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQ  R
Sbjct:  491 RYHKKAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTSDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLPSSDGSATGGAASXXXXXAVDGGAADEYDPGCEDTKGAGAMNTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQAGR 782
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: A0A7S1CDG6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDG6_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.250e-57
Identity = 129/333 (38.74%), Postives = 183/333 (54.95%), Query Frame = 1 
Query:   40 KRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLI---------SSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMRRKMGT-DVPLAFRRPKGLFDDVPEEGGGVFAAV 1008
            K  +AF DAWLA +R PLPP ++R+ LL LP  +IP+M  P+ L DFLT +Y  GGV ++LAL  L++L+  H+LDYPDFY +LYRL+TP  M AK+RARF  +++L L+SSH+P Y+VAAF+KR AR +L +PP+ A+F +  +  L+ RHP C+ ++         ++     SDS+     +      T G  N P    +D                            + K   A+ +SLWE+ AL +HY P VA+LA  F  + +K     + F+      A TY+SLF+ E +RK    D  LA   P  LF     EGG VFA +
Sbjct:  242 KLRRAFEDAWLAMMRRPLPPDVFRKTLLLLPKRIIPHMLHPLLLCDFLTDSYDEGGVVALLALHGLWVLISQHNLDYPDFYPALYRLLTPATMLAKHRARFLNLLNLFLSSSHLPVYIVAAFIKRIARLSLSSPPAVAIFAVPFMYNLLKRHPACVSMVHRDEDEPKTAAEGGVASDSEDEGGAAXXXXXXTDGPGNDPFIEDED----------------------------DMKKCKALDSSLWEVDALLHHYTPAVASLASVFKTKMNKVPYTVDDFS------AYTYKSLFEAEFKRKSAQRDQHLAVAAPAALF-----EGGDVFAEI 535
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: A0A226N954_CALSU (CBF domain-containing protein n=1 Tax=Callipepla squamata TaxID=9009 RepID=A0A226N954_CALSU)

HSP 1 Score: 201 bits (511), Expect = 9.550e-56
Identity = 122/319 (38.24%), Postives = 168/319 (52.66%), Query Frame = 1 
Query:   10 RFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMRRKMGTDVPLAFRRPKGLF 966
            R  W     +   QAF   WL  L+  LP  LY++VL+ L  +++PYM  P  + DFLTAAYG+GG  S+LAL+ LF+L+  H+L+YPDFY  LY L+ P + + KYRARFF + DL L+SSH+PAY+VAAF+KR +R  L APP   L  +  +  L  RHP C  L+           HR               N P   S+D                      Y    E    + A+++SLWEL +LQNHYHPGVA  A    +   + E +    +G  +L+A     +FD+E++ K   +VPL F R +GLF
Sbjct:  115 REEWKVSKLQAHKQAFERMWLTFLKHQLPSGLYKKVLVILHDSILPYMNEPTLMIDFLTAAYGVGGAISLLALNGLFILIHQHNLEYPDFYKKLYSLLDPSIYHVKYRARFFHLADLFLSSSHLPAYLVAAFIKRLSRLALTAPPEALLMVIPFICNLFRRHPACKVLV-----------HR--------------PNGPQDLSED---------------------PYIMEQEEPSESRALESSLWELQSLQNHYHPGVAQAAAILNQSLSELEDD---ISGLLELSA---SEIFDKEIK-KTSANVPLEFERVRGLF 380
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: A0A091ULT0_NIPNI (Nucleolar complex protein 4 (Fragment) n=11 Tax=Aves TaxID=8782 RepID=A0A091ULT0_NIPNI)

HSP 1 Score: 200 bits (508), Expect = 7.510e-55
Identity = 121/306 (39.54%), Postives = 168/306 (54.90%), Query Frame = 1 
Query:   49 QAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMRRKMGTDVPLAFRRPKGLF 966
            QAF   WL+ L+  LP  LY++VL+ L  +++PYM  P  + DFLT AYG+GG  S+LAL+ LF+L+  H+L+YPDFY  LY L+ P + + KYRARFF +VDL L+SSH+PAY+VAAF+KR +R  L APP   L  +  +  L  RHP C  L+           HR               N P   S+D                    +E DP       + A+++SLWE+ ALQNHYHP VA  A    +   + E +    +G  +L+A     LFD+E+++K   DVPL F + +GLF
Sbjct:  171 QAFEKMWLSFLKHKLPTGLYKKVLVILHDSILPYMNEPTLMIDFLTVAYGIGGAISLLALNGLFILIHQHNLEYPDFYKKLYSLLDPSIYHVKYRARFFHLVDLFLSSSHLPAYLVAAFIKRLSRLALTAPPEALLMVIPFICNLFRRHPACKVLV-----------HR--------------PNGPEDMSED----------------PYIMEEEDPS-----ESRALESSLWEIQALQNHYHPDVAKAAAILNQSLSEIEDD---ISGLLELSA---YELFDKEVKKK-AVDVPLEFEQVRGLF 423
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: A0A699YWQ0_HAELA (CBF domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YWQ0_HAELA)

HSP 1 Score: 201 bits (511), Expect = 9.050e-55
Identity = 132/334 (39.52%), Postives = 178/334 (53.29%), Query Frame = 1 
Query:    7 PRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTT-GLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMRRKMGTDVPLAFRR--PKGLFDD--VPEEGGG 993
            PR  W      KR  +F +AWLA L LP+P  L R+VLL +  +VIP M +P  LADFLT A   GG+  +LAL+ +FLL+  H L+YP F+  LY L+T D   AK RA+FF +VD+ L S  VPAY  AAF+KRFAR +LQAPP+GAL  +A +  LI RHP C+ ++   +   S   H      G + G   G   +P     D                    D Y  G E+   + A+++SLWE+ AL+ H+ P VATL     ++   +    E   GP  L + +Y SLF QE+ R++   VP+AF    P  LF    V EE  G
Sbjct:  173 PRATWANAKSHKR--SFTEAWLAVLSLPIPDDLLRKVLLRIHESVIPNMLNPNSLADFLTYALDQGGLTGILALNGIFLLVTQHRLEYPAFFQRLYNLLTVDAFAAKQRAQFFALVDIFLASPMVPAYTAAAFIKRFARLSLQAPPAGALLAVAFIHNLIRRHPACMTMLHRPSQPASTPAHADAGGEGDVRGLPPGSSMQPAAGKSD--------------PQGPGCDVYLEGEEDPAKSRAVESSLWEVEALRTHFCPQVATLTAVLDKDLGDRVKTSEVDLGP--LLSASYASLFSQEVERRI-KQVPVAFYNSPPSHLFSSSAVAEEWPG 487
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: A0A397HJB3_9GLOM (CBF domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HJB3_9GLOM)

HSP 1 Score: 202 bits (514), Expect = 4.930e-54
Identity = 119/316 (37.66%), Postives = 168/316 (53.16%), Query Frame = 1 
Query:   49 QAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMRRKMGTDVP----LAFRRPKGLFDDVPEE 984
            + F D WLA L+LP+   LY++VLL +   +IPYM  P+ L DFLT +Y  GG  S+LAL+ LF L+  H+LDYPDFY  LY L   ++M+ KYRARFFR+VDL L+S+H+P  +VA+F+KR +R +L +PP G +  + ++  LI RHP C+ LI   + + S                        ++SD+                   +D YD    +   + A+ +SLWE+  LQNHY P +ATLA+ F  +  K     E F         TY SLF+ E +R      P    LAF +PK +F  V  E
Sbjct:  339 RVFSDCWLALLKLPMTQELYKKVLLIMHKKIIPYMSQPIMLMDFLTESYNAGGAISILALNGLFTLINEHNLDYPDFYKKLYNLFDRNLMHVKYRARFFRLVDLFLSSTHLPVQLVASFIKRMSRLSLTSPPHGIVIIMPMIYNLIRRHPSCMVLIHRPSDSTS------------------------STSDE-------------------SDPYDFDEPDPMKSNAIDSSLWEMKTLQNHYFPNIATLAKIFQEKFTKISYNLEDFLD------HTYTSLFETETKRNKSKKNPKKLALAFEKPKLVFPVVENE 605
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: A0A1Z5JIV6_FISSO (U3 small nucleolar RNA-associated protein 19 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIV6_FISSO)

HSP 1 Score: 200 bits (509), Expect = 6.010e-54
Identity = 125/311 (40.19%), Postives = 165/311 (53.05%), Query Frame = 1 
Query:   52 AFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHV-PAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMRRKM-----GTDVPLAFRRPKGLF 966
            A+  AWLA L+L LPP   ++ L FLPGNV+P +P P+R +DF   AY  GGV SVLALD LFLL+  H L+YP+FY  LYRL+TP ++Y KYR RFFR++D CLT + + P +VVAAF+KR  R TL AP    LF LAL   L+ +  E   L+           HR                     +DD                    D +D   ++ + A A+++SLWE+ AL+ HY+P V+TLA+   RE +                A TYQSLF+QE  ++      GT VPL F RP  LF
Sbjct:  271 AWSKAWLAMLKLDLPPIALKKALRFLPGNVLPLVPHPLRFSDFFMEAYNHGGVVSVLALDGLFLLITTHGLEYPNFYKQLYRLITPSLLYVKYRTRFFRLLDKCLTRNEMLPTHVVAAFVKRLLRCTLVAPVPSVLFVLALCSNLLRKRLEMACLV-----------HR---------------------NDD-----------------EWKDGFDAETDDPEEANALQSSLWEICALERHYYPAVSTLAKSVGREQELSTP----LYNLDDFLAHTYQSLFEQERNKRKQQKGKGT-VPLTFVRPDSLF 527
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: L9KVY6_TUPCH (Nucleolar complex protein 4 like protein n=6 Tax=Tupaia chinensis TaxID=246437 RepID=L9KVY6_TUPCH)

HSP 1 Score: 198 bits (503), Expect = 6.180e-54
Identity = 122/319 (38.24%), Postives = 171/319 (53.61%), Query Frame = 1 
Query:    7 PRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMRRKMGTDVPLAFRRPKGL 963
            P   W     ++  +AF   WL  L+  LPP+LY++VL+ L  +++P++  P  + DFLT+AY +GG  S+LAL+ LF+L+  H+L+YPDFY  LY L+ P + + KYRARFF +VDL L+SSH+PAY+VAAF+KR AR  L APP   L  L L+  L+ RHP C  L+                            +RP +   D                   AD YDPG E+   + A+++SLWEL ALQ HYHP V+  A G + +A    +  E    P  L   T   LF++++R K    VPL F   +GL
Sbjct:  177 PSDKWKVAHLKEHRKAFQAMWLGFLKHKLPPSLYKKVLMILHDSILPHLAQPTLMIDFLTSAYDVGGAISLLALNGLFVLIHQHNLEYPDFYRKLYGLLDPSVFHVKYRARFFHLVDLFLSSSHLPAYLVAAFVKRLARLALTAPPEALLLVLPLICNLLRRHPACRVLV----------------------------HRPHSPELD-------------------ADPYDPGEEDPAKSRALESSLWELQALQQHYHPEVSKAA-GVINQA---LSAPEVSIAP--LLELTAFELFERDLR-KGPASVPLEFVPAQGL 441
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: A0A093G9B1_DRYPU (Nucleolar complex protein 4 (Fragment) n=1 Tax=Dryobates pubescens TaxID=118200 RepID=A0A093G9B1_DRYPU)

HSP 1 Score: 198 bits (503), Expect = 9.670e-54
Identity = 119/306 (38.89%), Postives = 168/306 (54.90%), Query Frame = 1 
Query:   49 QAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMRRKMGTDVPLAFRRPKGLF 966
            QAF   WL+ L+  LP  LY++VL+ L  +++PYM  P  + DFLT AYG+GG  S+LAL+ LF+L+  H+L+YPDFY  LY L+ P + + KYRARFF ++DL L+SSH+PAY+VAAF+KR AR  L APP   L  +  +  L  RHP C  L+           HR               N P   S+D                    +E +P       + A+++ LWE+ ALQNH+HP VA  A    +   + E +    +G  +L+A     LFD+E+++K  TDVPL F + +GLF
Sbjct:  211 QAFQKMWLSFLKHKLPTGLYKKVLVILHDSILPYMNEPTLMIDFLTVAYGIGGAISLLALNGLFILIHQHNLEYPDFYKKLYNLLDPSIYHVKYRARFFHLLDLFLSSSHLPAYLVAAFIKRLARLALTAPPEALLMVIPFICNLFRRHPACRVLV-----------HR--------------PNGPEDMSED----------------PYLMEEEEPS-----ESRALQSCLWEIQALQNHFHPDVAKAAAVLNQSLSEMEDD---ISGLLELSA---YELFDKEVKKK-ATDVPLEFEQVQGLF 463
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Match: A0A2I0M869_COLLI (Nucleolar complex associated 4 homolog n=4 Tax=Neognathae TaxID=8825 RepID=A0A2I0M869_COLLI)

HSP 1 Score: 196 bits (499), Expect = 1.130e-53
Identity = 118/306 (38.56%), Postives = 164/306 (53.59%), Query Frame = 1 
Query:   49 QAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRLVTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSGALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLKNRPLTSSDDGAXXXXXXXXXXXXXXXXAADEYDPGCENTKGAGAMKTSLWELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFDQEMRRKMGTDVPLAFRRPKGLF 966
            QAF   WL+ L+  LP  LY++VL+ L  +++PYM  P  + DFLT AYG+GG  S+LAL+ LF+L+  H+L+YPDFY  LY L+ P + + KYRARFF ++DL L+SSH+PAY+VAAFLKR +R  L APP   L  L  +  L+ RHP C  L+                            +RP    D                   + D Y    E    + A+++ LWE+  LQNHYHP VA  A    R   + E +    +G  +L+A     LFD+E+++K   DVPL F + +GLF
Sbjct:  159 QAFEKMWLSFLKHKLPTGLYKKVLVILHDSILPYMNEPTLMIDFLTVAYGIGGAISLLALNGLFILIHQHNLEYPDFYKKLYSLLDPSVYHVKYRARFFHLLDLFLSSSHLPAYLVAAFLKRLSRLALTAPPEALLMVLPFICNLLRRHPACRVLV----------------------------HRPDGPQD------------------MSEDPYVMEEEEPSESRALESCLWEIQTLQNHYHPEVARAAAVLSRPLSELEDD---ISGLLELSA---YELFDKEVQKK-AADVPLEFEQIRGLF 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1085.1235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU50_ECTSI5.600e-17092.12CBF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1CDG6_9STRA3.250e-5738.74Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A226N954_CALSU9.550e-5638.24CBF domain-containing protein n=1 Tax=Callipepla s... [more]
A0A091ULT0_NIPNI7.510e-5539.54Nucleolar complex protein 4 (Fragment) n=11 Tax=Av... [more]
A0A699YWQ0_HAELA9.050e-5539.52CBF domain-containing protein n=1 Tax=Haematococcu... [more]
A0A397HJB3_9GLOM4.930e-5437.66CBF domain-containing protein n=1 Tax=Diversispora... [more]
A0A1Z5JIV6_FISSO6.010e-5440.19U3 small nucleolar RNA-associated protein 19 n=2 T... [more]
L9KVY6_TUPCH6.180e-5438.24Nucleolar complex protein 4 like protein n=6 Tax=T... [more]
A0A093G9B1_DRYPU9.670e-5438.89Nucleolar complex protein 4 (Fragment) n=1 Tax=Dry... [more]
A0A2I0M869_COLLI1.130e-5338.56Nucleolar complex associated 4 homolog n=4 Tax=Neo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1085contigEcto-sp8_S_contig1085:12590..17254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score443.7
Seed ortholog evalue6.5e-122
Seed eggNOG ortholog2880.D7FU50
Preferred nameNOC4L
Model size1589
KEGG koko:K12767,ko:K14771
KEGG Pathwayko04113,ko04138,ko04213,map04113,map04138,map04213
Hectar predicted targeting categorysignal peptide
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140110,GO:1901360,GO:1903506,GO:1990904,GO:2000112,GO:2001141
Exons5
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG2154@1,KOG2154@2759
EC2.7.11.1
Cds size876
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1085.1235.1prot_Ecto-sp8_S_contig1085.1235.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1085 13153..17104 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.8679347-UTR-Ecto-sp8_S_contig1085:12589..131521681143176.8679347-UTR-Ecto-sp8_S_contig1085:12589..13152Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1085 12590..13152 -
1681143176.9222326-UTR-Ecto-sp8_S_contig1085:17104..172541681143176.9222326-UTR-Ecto-sp8_S_contig1085:17104..17254Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1085 17105..17254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.8801012-CDS-Ecto-sp8_S_contig1085:13152..132751681143176.8801012-CDS-Ecto-sp8_S_contig1085:13152..13275Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 13153..13275 -
1681143176.8893204-CDS-Ecto-sp8_S_contig1085:13645..137501681143176.8893204-CDS-Ecto-sp8_S_contig1085:13645..13750Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 13646..13750 -
1681143176.899323-CDS-Ecto-sp8_S_contig1085:14636..150121681143176.899323-CDS-Ecto-sp8_S_contig1085:14636..15012Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 14637..15012 -
1681143176.9066112-CDS-Ecto-sp8_S_contig1085:15638..158081681143176.9066112-CDS-Ecto-sp8_S_contig1085:15638..15808Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 15639..15808 -
1681143176.914067-CDS-Ecto-sp8_S_contig1085:17002..171041681143176.914067-CDS-Ecto-sp8_S_contig1085:17002..17104Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 17003..17104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1085.1235.1

>prot_Ecto-sp8_S_contig1085.1235.1 ID=prot_Ecto-sp8_S_contig1085.1235.1|Name=mRNA_Ecto-sp8_S_contig1085.1235.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=292bp
MPSPVRLADFLTAAYGLGGVRSVLALDALFLLMQAHDLDYPDFYDSLYRL
VTPDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFARATLQAPPSG
ALFTLALVRKLIGRHPECLPLISSRAPAVSDSKHRLLTSSGALSGTTGLK
NRPLTSSDDGAPGGAASPPPGGAADGGAADEYDPGCENTKGAGAMKTSLW
ELAALQNHYHPGVATLARGFLREADKKEAEGEAFAGPSKLAAETYQSLFD
QEMRRKMGTDVPLAFRRPKGLFDDVPEEGGGVFAAVNFSIS*
back to top

mRNA from alignment at Ecto-sp8_S_contig1085:12590..17254-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1085.1235.1 ID=mRNA_Ecto-sp8_S_contig1085.1235.1|Name=mRNA_Ecto-sp8_S_contig1085.1235.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4665bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1085:12590..17254- (Ectocarpus species8 EcLAC_412)
CCCCCCCCCCGCTTCGTCTGGGATGCCTGCCCGAAACGAAAACGACACCA
GGCGTTCGGCGACGCGTGGCTCGCCTGCCTTCGGCTGCCCCTCCCTCCGG
CCCTGTACCGGAGGGTGCTGCTCTTCCTCCCCGGCAACGTGATCCCGTAC
ATGCCTTCCCCGGTGAGGCTGGCGGACTTCTTGACGGCGGCGTACGGCCT
GGGCGGGGTGCGGTCGGTGCTGGCACTCGACGCCCTGTTCCTTCTCATGC
AGGTGGGTGGGTGTGTTTGTTGTTTGCATCGACCGCCGCTGACCAATGAA
AAGGCGTCAGTCTCAGTGTGGTTGAACGCAGAAAATGCTGCTAATGGCTA
CCATATGATCTCGGATCAGGCGTGTGTGTTGATGTATATTTATTGTGTGC
ATTGACCGAACTAGCTCATGAAAGGACGTCAGTCTCAGCGGCGTGCGGCT
TGACCGGCTGACCAATGAAAAAGACGTCCGGCTCAGTGCGGCGAAATACA
GAAAATGTTGTTTTTTACCATGATCTGGGACCAGGTGTGTGCGTGGTTGA
CTGCCGTTTGGTCTGGGGGCGGCGCAGGCGACGGTGTCATTGCTGGCGTG
GTGGTAATTGATGTGGTTGCCGTTGTGGCTTCATAGCTGTTTCAGGCTGA
AGTGGGTGTGTTGGTTATGCTGGCGTTGGAGAGCTGTTCGGTACTTGGTA
CTTACGACACAGGCTCCCTATTATAGTGCTACAGGCGGCACCGTGACAGA
GAGAATGTTCAGACAGCCCCGCCCCCCTCACATGGGTTGCTCCGTCTGCC
CCAATTTCTTCGCCGCTGAGAATATCGGGCCAATGCCTTTGTCGCCCCCT
GTGCTTGCTCCTCACACAGACCACCATGACTAGCAATAATGTCAGCTGAG
CGGAGGCTTTATAGTAGCATTTGCATCACTACCCCCCCGGCACCGTTTGG
AGACGGAAACGTTGAAACGATATCGCTTGTCGTGGAGGGGCGGAGTTGAC
AAGAGTTTACGGGTTACGATAGTGGAGGGGGGAAGGGACGAAATGGTTTG
GGTGTTGAAATTGAACCCAAGAAGCTTCGTAAGGCTGTGTGTGCCAGCTG
CCGGGAAGCCACCGAACGAAAGCAGCGGAAAGGGGGACCCGGTCTGTCTC
TGCTGTCTTCCAGCCACGGCTGCAATGTCAACGGGGTACCGAGTTCGGCA
ACATTAAGTGACCTTAACGGTTCACCCCCCCCCCCTCCTCGTCTCCGGAG
ATGTTGTCTTTCCAGTGTTCGATGAGAATGACTCTCCTTCGTGTGCAGTT
CCTAATGCGTACCTCCTCGATTGCGAGGGTCAACTGATATTTCCCCGCGA
AGCTCAACGGATCTATCCCCGGGAAATTCAACAGATGATTCCGCGCACAT
TCCGCCTTTCCACGCACCTAAACCTCCCGACGATCTCCCGAAACAGGCGC
ACGACCTGGACTACCCGGACTTCTACGACTCGCTGTACCGGCTGGTGACG
CCCGACATGATGTACGCCAAGTACCGCGCGAGGTTCTTCCGCATGGTGGA
CCTCTGCCTGACCTCCTCGCACGTACCCGCTTACGTCGTCGCTGCCTTCC
TCAAGAGGTTTGCCAGGTGAGGAGGCGTTAGTTTTTGTTTTTGGAGGGGG
GGGGGGGGTATGCGTTTCCTCTCGCGGAGCCCCGGGCTGCCTAATAATTG
GAAGGGGTGGTGAGTCGGTTGTCATCGACATCAATGTGCTTGACCGTGGA
AGACCTCGGCTGCTCGACTGGAAAATAACGTTTGTGTCACACCTTACGCC
CACGTCACTTGTACTTCAGTTTGTACCAGAGCACAGCCTATGCAAAATTG
CTTTTGAACGCCACGCCTCTTCTGCATTCTGGGCAGTATTGATGTGTTGT
CCTACGATCGTTTGCTGCATCCCCGCCGTGGGTGTTGGCCTCCTTATCTT
GTAGAGCCAGTCTCGAAGATGTCCCTCTTTTGCTACCACCGCTTTGTGAC
CCTGAGTACCCTCCCCTTGTCTCATCGCCATGACTCTGCTCACCACCACC
ACGGCCCAGAGACCATCGACCCCCCCCTCCTTCGTGCAAGGACTGTGGCA
ATAGTGCAACCCCCCCCCGTCCGTGCTCTGTCCTCTCGAGAGGGCGCGAG
GTCAATGGTCTAACGACTACGGCATGCGTTTACATGAGTACCTCCCCCCC
CCCCCCTCCGGTTGTTGCCACGATTGTTTTTGCCCGCGACAGGGCCACGC
TCCAGGCCCCCCCTTCGGGGGCCCTCTTCACCCTCGCCCTCGTCCGAAAG
CTCATCGGGAGGCACCCCGAGTGCCTGCCGCTCATCAGCAGCAGGGCGCC
CGCGGTCTCGGACTCCAAGCACCGCCTCCTTACATCTTCGGGGGCCCTCA
GCGGCACCACCGGCCTCAAGAACCGCCCTCTTACCTCATCCGATGATGGT
GCTCCCGGCGGGGCTGCATCCCCCCCCCCCGGGGGTGCCGCGGATGGGGG
CGCTGCGGATGAGTACGACCCAGGGTGCGAGAACACCAAGGGGGCCGGGG
CCATGAAGACGAGCTTATGGGAGCTTGCCGCGCTGCAGAATCACTACCAT
CCCGGGGTAGCCACACTGGTGAGAACGGGGGTAATCATGCCGTAGTCGTT
GGACCATTGACCTGGCATCCCTACAAAGCCGGGACGGAGCACGCCGGGTT
CTCACTGCACCAGGCTCTCACGTCACAACGCGTGGAGCGGCGTACCGGGG
GGTAGGAGAAATTGTGGATGGAGGGATTGTCTTTTGGAAGGGTGTTGGGG
CCGCTTTCGATCCGATTAGACTAGGCTTTTGTTGTAATCGGGGTTGACGT
TGTGTTGTTTTGTTCCGTTACTCACCGATGGAGGAAGTAACCTACCTCGT
CATTGGTGAGGTTGTGCCCGTGGGGAAGGCCGAACTCAGCTCCCCGCTGG
TGGTGGTGCTGGGCTACAATCCTTGATAGACCCACCTTTCCAACGAGTTT
CGAACGCCACAACAGTGGTGGCGGTTGTGTGCAAGTTTGAGCGGCCATCA
GCTCTGTTGTCACGATCATGCTGTCATGTCGATGGAATGCGCAATATTGA
AGTGAAACACCGCAATGAATAGGGAGGAGAACACCTGCTTCTCTTGGCGT
TATGTATTCTTCCGCCGAGTTTGGATGCGTCTTGTTGGCCAGAGGGGCTC
AACAACTTCGTCGGAAGCTTCCACAGGACCCGGTAGCTGTAGACTGATCT
GTTCGTTTCTTTAAGGAATGCGTTGACCATCACTGATTTGTTTTTCAAAC
TTTTTTGTACTTGTCTTTCAAAATCAACCCGTATAGTATATTCATTCTCT
ATTTTCTATCCACAGAATAGAGGATCCAGGACGAACGGTAGCAATGACTT
CACTGCAGTGATGCATTGGTCATCCTCTATCCACAGCATAAAGAATCCAG
GCCAAATAGCAATAATTCCACAGCAGTGATACGTTGACCTACCCGTGTTT
CCAGGCTCGGGGGTTTCTCCGTGAGGCAGACAAGAAGGAAGCAGAGGGCG
AGGCCTTTGCGGGCCCGTCCAAGCTCGCGGCGGAGACATACCAGTCTCTC
TTCGATCAGGTGAGCAAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGCCGA
CATGACTCTTGTAGCCGATTGTCTTACGAGGTTACCGTTTGGTTTGGGAG
GTTGATTTGTTTGAATCCTTTTCGCGTGACTTTCGGATACATCCCACGAT
TATCATTTCATCAGAGCTCTCGTTTTGACTCAAGCGCCACCTTCACGTAT
ACCCCTTTCCTTTCGGTGATATGACAAATGTCCGTAGGTATAAGGTGGCG
CCGTTTTGTGTTTTACAACAGTACGGATATTGGAAGGTACCGAGCGGAGA
CCGGAACGGTTTTTAATGTGAAGACAACAACGCCCCCCATTCCGTCCCGG
CGTTCTCTTTCGTGACGTACGTGCACCAGGAAATGCGCCGCAAGATGGGA
ACTGATGTTCCCCTCGCGTTCCGCCGCCCGAAGGGGCTCTTTGACGATGT
CCCCGAGGAAGGCGGAGGCGTGTTTGCGGCCGTGAACTTCTCCATATCTT
GATTGCCACCTGAGTAGCGGTGATTTGGTTACTCTTTGAGTGATGAGTTC
CACTGCCCGTCATTCGACGGCGATAAGTGCTCAAGTAGTTTGCTGAGTGA
AATGACGCGTATTGCGCCTCCAACTTCGTAACTGTTGTAGTTTGGCAACT
GTCACGTACATGAAGCTTTCAAGGCAGCAGCACAGCGGGTTGGAATCACG
CAAGCGTTCGTGTTCGAGATTTGTTCCAAACATTTTTTTTGCCAATGTCT
TCTTGTCGCTAAGTTGACGACGGTGATGTGCTTCAATTCAACACCACACT
TGTCTGAGGGAGTTATCGTTGATTGGTATCGCAGCTTGCCTCGGGCAACC
GTGCTGATCCTCCTAGAGATTTTCGTTTTTTTTTCAAGGTGGTGTAGAGA
GCAGTGAAGAGATGAAGATTCGCACGAAAGTAGTGTGATAAATCTTGTTG
CATCCTTAGGAAAACGGTCAGAGCAAGAAAAAAGCGTCAAGTGGTCTATA
TACGTGCATGGTTTATAGATGGACAACGCCTAAAACTCAGTCTGATGTAG
AGGGAACAGACGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1085:12590..17254-

>mRNA_Ecto-sp8_S_contig1085.1235.1 ID=mRNA_Ecto-sp8_S_contig1085.1235.1|Name=mRNA_Ecto-sp8_S_contig1085.1235.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1085:12590..17254- (Ectocarpus species8 EcLAC_412)
ATGCCTTCCCCGGTGAGGCTGGCGGACTTCTTGACGGCGGCGTACGGCCT
GGGCGGGGTGCGGTCGGTGCTGGCACTCGACGCCCTGTTCCTTCTCATGC
AGGCGCACGACCTGGACTACCCGGACTTCTACGACTCGCTGTACCGGCTG
GTGACGCCCGACATGATGTACGCCAAGTACCGCGCGAGGTTCTTCCGCAT
GGTGGACCTCTGCCTGACCTCCTCGCACGTACCCGCTTACGTCGTCGCTG
CCTTCCTCAAGAGGTTTGCCAGGGCCACGCTCCAGGCCCCCCCTTCGGGG
GCCCTCTTCACCCTCGCCCTCGTCCGAAAGCTCATCGGGAGGCACCCCGA
GTGCCTGCCGCTCATCAGCAGCAGGGCGCCCGCGGTCTCGGACTCCAAGC
ACCGCCTCCTTACATCTTCGGGGGCCCTCAGCGGCACCACCGGCCTCAAG
AACCGCCCTCTTACCTCATCCGATGATGGTGCTCCCGGCGGGGCTGCATC
CCCCCCCCCCGGGGGTGCCGCGGATGGGGGCGCTGCGGATGAGTACGACC
CAGGGTGCGAGAACACCAAGGGGGCCGGGGCCATGAAGACGAGCTTATGG
GAGCTTGCCGCGCTGCAGAATCACTACCATCCCGGGGTAGCCACACTGGC
TCGGGGGTTTCTCCGTGAGGCAGACAAGAAGGAAGCAGAGGGCGAGGCCT
TTGCGGGCCCGTCCAAGCTCGCGGCGGAGACATACCAGTCTCTCTTCGAT
CAGGAAATGCGCCGCAAGATGGGAACTGATGTTCCCCTCGCGTTCCGCCG
CCCGAAGGGGCTCTTTGACGATGTCCCCGAGGAAGGCGGAGGCGTGTTTG
CGGCCGTGAACTTCTCCATATCTTGA
back to top