mRNA_Ecto-sp8_S_contig1085.1233.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1085.1233.1
Unique NamemRNA_Ecto-sp8_S_contig1085.1233.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1085.1233.1 vs. uniprot
Match: D7G443_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G443_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 2.020e-119
Identity = 181/188 (96.28%), Postives = 185/188 (98.40%), Query Frame = 1 
Query:  256 MVFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGSWAIAKDREGNSCANEVPLLYSFCVTLIAIYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQFAQNRDKEQVLEAEQQVVARKFDARDEEGNGTIDRQQAEELIEELGIGLSSKKLKKAMGQLDPAGEGVVSKQD 819
            MVFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFG+WAI KDR GNSCANEVPLLYSFCV L+A+YWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQFAQNRDKEQVLEAEQQ+VARKFDARDEEGNGTIDRQQAEELIEELGIGLSSKKLKKAMGQLDPAGEGVVSKQD
Sbjct:    1 MVFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGTWAIVKDRVGNSCANEVPLLYSFCVALVAVYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQFAQNRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQAEELIEELGIGLSSKKLKKAMGQLDPAGEGVVSKQD 188
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BLAST of mRNA_Ecto-sp8_S_contig1085.1233.1 vs. uniprot
Match: A0A7S1UGR8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGR8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.160e-20
Identity = 67/252 (26.59%), Postives = 135/252 (53.57%), Query Frame = 1 
Query:   58 RKWASVVLLGPLMPSLMATVIIVVGGAIVK-ASGGMADVVGELEDDRCGYRIDNFLKAAIVNSYLLLMVFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGSWAIAKDREGNSCANEVPLLYSFCVTLIAIYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQFAQNRDKEQVLEAEQQVVARKFDARDEEGNGTIDRQQAEELIEELGIGLSSKKLKKAMGQLDPAGEGVVS 810
            RKW+ V++ GPL  +  A    +VG  ++  A     D+ G+  ++     I NF++ AIV SYL LM++AW FLGF+    I  RK   LRP  +L+ +  LY +L  +++ ++ +G+W+++       C + VP +YSF   +  +Y+         ++ +      ++ A   V+      ++     +LEA      ++F   D++G+G +++++ ++L+ E+   L+++++  A+  LD +G+G++S
Sbjct:   16 RKWSGVLIFGPLPWAFFAIFTTLVGSVLIHTAKLKCLDLFGDAGNN--ADNIANFIRGAIVVSYLFLMLYAWLFLGFKWDLKIMSRKYPVLRPIPNLAVLCTLYAILAVVTVPVFAYGAWSLSDSY----CLDSVPTIYSFASFITIVYFCIATVHVGVVLTMACAATARNAAITGVDSIMDARRHSTNNSMLEA----AKKRFLEYDKDGSGELNKRELKKLLREVNKDLTTEEIANAVELLDESGDGMIS 257
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BLAST of mRNA_Ecto-sp8_S_contig1085.1233.1 vs. uniprot
Match: T0Q973_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q973_SAPDV)

HSP 1 Score: 55.1 bits (131), Expect = 4.010e-5
Identity = 41/151 (27.15%), Postives = 70/151 (46.36%), Query Frame = 1 
Query:   64 WASVVLLGPLMPSLMATVIIVVGGAIVKASGGMADVVGELEDDRCGYRIDNFLKAAIVNSYLLLMVFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIW-IFGSW-AIAKDREG-NSCANEVPLLYSFCVTLIAIYWV 507
            WA ++LL PL P  +A   +V GG I  A+              C   +D FL+ A+  SY+L++ +A+ ++G               RP   L  + + Y +   +S+  W  FG+  A+     G  SC ++ P+LY F    +A++W+
Sbjct:   48 WAPILLLYPLGPVCVALTTVVFGGVITNAAS-----------TTCNAHLDTFLQGAVGLSYVLILFYAYCWIG--------------PRPIRRLRVLKVFYSIYGVVSVGWWGFFGTLQAVTATATGFQSCLSQSPMLYLFSQYQVAVFWI 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1085.1233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G443_ECTSI2.020e-11996.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UGR8_9STRA1.160e-2026.59Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
T0Q973_SAPDV4.010e-527.15Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1085contigEcto-sp8_S_contig1085:1..3492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size819
Hectar predicted targeting categorysignal anchor
Exons5
Cds size819
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.7106388-CDS-Ecto-sp8_S_contig1085:0..1081681143176.7106388-CDS-Ecto-sp8_S_contig1085:0..108Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 1..108 -
1681143176.7184474-CDS-Ecto-sp8_S_contig1085:464..5841681143176.7184474-CDS-Ecto-sp8_S_contig1085:464..584Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 465..584 -
1681143176.7256777-CDS-Ecto-sp8_S_contig1085:1310..15061681143176.7256777-CDS-Ecto-sp8_S_contig1085:1310..1506Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 1311..1506 -
1681143176.7331014-CDS-Ecto-sp8_S_contig1085:2035..22681681143176.7331014-CDS-Ecto-sp8_S_contig1085:2035..2268Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 2036..2268 -
1681143176.740574-CDS-Ecto-sp8_S_contig1085:3330..34921681143176.740574-CDS-Ecto-sp8_S_contig1085:3330..3492Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1085 3331..3492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1085.1233.1prot_Ecto-sp8_S_contig1085.1233.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1085 1..3492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1085.1233.1

>prot_Ecto-sp8_S_contig1085.1233.1 ID=prot_Ecto-sp8_S_contig1085.1233.1|Name=mRNA_Ecto-sp8_S_contig1085.1233.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=273bp
MDDELESPAAALAASSPTQRKWASVVLLGPLMPSLMATVIIVVGGAIVKA
SGGMADVVGELEDDRCGYRIDNFLKAAIVNSYLLLMVFAWSFLGFETHFS
IRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGSWAIAKDREGNSCA
NEVPLLYSFCVTLIAIYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQ
FAQNRDKEQVLEAEQQVVARKFDARDEEGNGTIDRQQAEELIEELGIGLS
SKKLKKAMGQLDPAGEGVVSKQD
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mRNA from alignment at Ecto-sp8_S_contig1085:1..3492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1085.1233.1 ID=mRNA_Ecto-sp8_S_contig1085.1233.1|Name=mRNA_Ecto-sp8_S_contig1085.1233.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3492bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1085:1..3492- (Ectocarpus species8 EcLAC_412)
ATGGATGATGAACTCGAATCGCCAGCGGCTGCTCTAGCAGCGAGCTCGCC
GACTCAGAGAAAATGGGCGTCTGTCGTGTTGCTGGGTCCTTTGATGCCGA
GCTTGATGGCGACAGTGATCATCGTGGTTGGTGGGGCCATCGTGAAGGCG
AGTGGCGGCATGGTTGACATAATACAGGTTTACATGGCAGAGAGTTAAGC
TGCCGTCTACGTGCTTCGAGCAGTGCTGGTTCATGACTTGAGACGAAGAG
ACTGTGCCGTAGGCTAATGGCGGGGTCTACACTCCGTACTGCGATAGACC
ACCCTACGTACGCAAGACTTGATGGGCAGCCTATCACTAATCTATACCAT
CTGCAGTCTATTGTGTAGAATATTGCTCATAGACGAGATAGGCATGGAGT
CACCAGAACGAAAGGTCCCCCCAGGTGAGATGCGAACCTGCAACACGTTA
GATTCCTGCAACATTTCGTGCAGAGCTGTGAATGCACCAATAATCCTATC
AAGCCGCGGTCACGTGACGATTTTGAGGGTCTACTTTTCAATCAGAACAC
GCACGCTTACATCCCCACTCTATCATGAAGGCACTGGATTTTCTGGGCAT
GTTCTGCGTCTGTGCATGTATGTGAAGGGGTGTGCTACCGATCTTGGGGT
ATTGTAACTCCATGAAATTATCAGTCTACTGAAAGTAAACGACTCAGCGA
ATCCCGGTGCTTCGACCATTTATTTACGGAGACGAAGCTGCGTCTTACGG
ACGGTGGCACACCACGTTTTGTACGACAACCCTTGGCGTCAAGGCAGTGC
AATAAATGATATTGTATGATGATCCAGTGAACATTGCACAAACGGGCGTG
CTCACAGTATCCAAATTTACTCATGTTGTGCGGAGCGCTCCGAAAGAAAA
ACCTCACTCGCCCGCACAACCTCCCGGAACGGTATGCCTTTCGGGAAAAA
CCGCGTATCTACATCGACTGGGAGTTGTCAGGCATCGTCAGAGTGTCCTG
TCCCAAAACCTTTGTTCTGCTATGGACACCCCCGTTAAAATGCCGTCCTT
CGCAGCTCCTACCAACCCTACGGCATTTTTTCGGCAGCTCAGATCCTCAT
ACCAAACGTAGGAATTTCAGACCTACATATCTGTGCACAGCTATCACCGC
AAGGCCTGCTACGGGGCAAGCACTCGGCATGGCTCACACCCAACGAGTTT
GTTTGTTGTTTGCACCATCTGCAGGCGGACGTTGTCGGCGAGCTTGAGGA
CGATCGGTGCGGGTACAGGATCGACAATTTCCTCAAGGCGGCGATCGTGA
ACAGCTACTTGCTGCTCATGGTGTTCGCGTGGTCGTTCCTTGGGTTCGAG
ACCCACTTCTCCATTCGAGGCCGAAAAAGGCGCTTCTTACGGCCCTTTTC
GAGCCTCTCGTTTGTGGCATTGCTGTACCTGCTGTTGTTCAGCATGAGCA
TGGCCATGTGAGCGCACGTGCCGACAACTTTCCTTCAAATCATTCGTTTG
GGGAGGGTTGTGTTGTATTGATTCATTGGTGATCGTGACGAGGCCGAGCT
TTTGTTGAGTCCTAGTCACCGGGGTGATGTCACCGGAGTTGTCACCCGCT
TTGTCTTCCACTTGACTCTCAGCCGAAACTACCGACATCAAATAGTACAC
AATGGTGGTGATCCCGTCAAAACGTAGAGAAGGCGTGGTCTACACAGCGT
TGTTTGCGCGAAGCGAGTTGAAACGAATCCCAACAAAAAATGTTTGTTCG
CCTTCCACAAACCCTTGCTCTCCCTAGCGGTGTGGTCACAAAGTTCTTGG
ACGTTGACACCAAAAGAGCGGAAAAGTAATGCAACACTTGGATTTGCACG
AAGGACAATCGACACCCGACCAGCCGAACCGCCAGCGTGAGAAAAGCCGT
AGCTCGTGGAGTCCATCGCACGTTTTCCACCACCACCTAAAAGTACCTAT
CCATCGCTTTGCTGCTTACCACGACCACCGCATCAGATGGATATTCGGCT
CTTGGGCCATCGCCAAGGACCGCGAAGGCAACAGTTGCGCGAACGAAGTT
CCCCTGCTTTACTCCTTCTGCGTGACCTTGATCGCCATCTACTGGGTCGG
TGTGGTGTTCGGAGCCGTCGGTCTGATAAAGGTCCTGTTCGGCAAGAAGA
TCCAGAGCGGGGCCCAAGCGACCGTCGAGAAGGTGCCCATCGTAAAAAAG
ACACGGTCGAATCTCTACCGCCCCGTCCTTATCTTTGTGGTCCCGACACA
CGACGAGAAGCTTCCCAGCCCTGGGGTGGCCTTCGCTCCCCCTGTGTGAC
CCTGCCTGTTGGCAAATGCCAATAAAACAAAGACAAAGACTGATACGTGG
CCTTCCTCTTCCCTGTGTGTCCCCGTTTATTGAGAAATGATCCCGCCTGA
TGCGTCCAGAAAGAAAAAGAAGAACATATTATATGTGCATAGGATGGTGA
AGCGGACGCCCCCAAATGAACCTTTTCGTTTCTTCGGTTGTCGCACTGTC
GTTTGTCTGATCTAGACCTGCCAAGACATGTTATTCGTGCGTACACAACG
CTGTCGAATTACTTATAGTTGGATAGAGGGCTCAGGGCGACGTGCAAGCA
ACCATCGAAGATATTTGCTGCCAGTTTGGCTGCGTATGCGAGGATAGATT
GGGTACAAGAACGATGCCAATCACACCAAAGTGAATTTACCTGAGATACT
GTGCGCTGGCGAGTCGAACTCATAGCACACCCATTCTTCGCCACTCAGAG
GTGTGAATACATACTTATACCCTTGTACCCTTCTATGGCGATATCTCGCT
TGTTCGCTAGTCAAAAACCTATTTGGTGGTACGGTGGTGCATGGTATGAA
TGTCAGTTCTGTCTGTTATGCTCACACGAGATGTCTCAATGTTGTCATGG
TCGTCCAGGGGAAGCAATTCGCGCAGAACAGAGACAAGGAACAGGTTCTC
GAGGCGGAGCAGCAAGTGGTCGCACGAAAATTCGACGCTCGCGACGAGGA
AGGAAATGGAACCATCGATCGTCAACAGGTTGGTCGAAAAAAAATACAGT
AGGCAATCATACGCTAGGCCGTTACAATGACAATCCCCGCCAAAAGTATC
CTCTCCGAGCACTGGCAAGTTTATACGTTAAAGGTCGGTGGCATCCAGAG
AAAATTGCTCTAAAAAAGATATCTCGCTCCTCCTATAAAATCGTGTCCCC
TGCAGAAACATTCACGTTGGTGAAACCCTACGACCAGCGCCCCTCTCTCA
GTCTTGGGGGAGCTCCGCCTCCAGCCTTCATAGCTGATAGAAGACGGATA
GGATATTTATCGCCCCCGACAAATACTAAATATTGTGCGTACGCAAACCA
CCTTCTTGGCCGCGACAAATCCCTAAACAACAAGGCGGAGGAGCTAATCG
AGGAGCTGGGCATTGGGCTGAGCAGCAAGAAGCTGAAGAAGGCCATGGGC
CAGCTAGATCCAGCAGGGGAAGGGGTGGTTTCGAAACAAGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1085:1..3492-

>mRNA_Ecto-sp8_S_contig1085.1233.1 ID=mRNA_Ecto-sp8_S_contig1085.1233.1|Name=mRNA_Ecto-sp8_S_contig1085.1233.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1085:1..3492- (Ectocarpus species8 EcLAC_412)
ATGGATGATGAACTCGAATCGCCAGCGGCTGCTCTAGCAGCGAGCTCGCC
GACTCAGAGAAAATGGGCGTCTGTCGTGTTGCTGGGTCCTTTGATGCCGA
GCTTGATGGCGACAGTGATCATCGTGGTTGGTGGGGCCATCGTGAAGGCG
AGTGGCGGCATGGCGGACGTTGTCGGCGAGCTTGAGGACGATCGGTGCGG
GTACAGGATCGACAATTTCCTCAAGGCGGCGATCGTGAACAGCTACTTGC
TGCTCATGGTGTTCGCGTGGTCGTTCCTTGGGTTCGAGACCCACTTCTCC
ATTCGAGGCCGAAAAAGGCGCTTCTTACGGCCCTTTTCGAGCCTCTCGTT
TGTGGCATTGCTGTACCTGCTGTTGTTCAGCATGAGCATGGCCATATGGA
TATTCGGCTCTTGGGCCATCGCCAAGGACCGCGAAGGCAACAGTTGCGCG
AACGAAGTTCCCCTGCTTTACTCCTTCTGCGTGACCTTGATCGCCATCTA
CTGGGTCGGTGTGGTGTTCGGAGCCGTCGGTCTGATAAAGGTCCTGTTCG
GCAAGAAGATCCAGAGCGGGGCCCAAGCGACCGTCGAGAAGGGGAAGCAA
TTCGCGCAGAACAGAGACAAGGAACAGGTTCTCGAGGCGGAGCAGCAAGT
GGTCGCACGAAAATTCGACGCTCGCGACGAGGAAGGAAATGGAACCATCG
ATCGTCAACAGGCGGAGGAGCTAATCGAGGAGCTGGGCATTGGGCTGAGC
AGCAAGAAGCTGAAGAAGGCCATGGGCCAGCTAGATCCAGCAGGGGAAGG
GGTGGTTTCGAAACAAGAC
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