mRNA_Ecto-sp8_S_contig10842.1231.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI) HSP 1 Score: 176 bits (447), Expect = 1.310e-46 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1
Query: 1 GSLWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE 255
GSLWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE
Sbjct: 2259 GSLWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE 2343
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A7S2BB24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BB24_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 7.670e-14 Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 7 LWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
L++P F + K++GWW+ LG EDGELLALKR+GTL YSTTL F +P + G L L +VAD V G+D++
Sbjct: 415 LYTPHFHKPKDLGWWLALGAEDGELLALKRIGTLQNNSYSTTLTFAAPLEH-GATKLALWLVADAVRGLDKR 485
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: UPI000A2A9723 (activating signal cointegrator 1 complex subunit 3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9723) HSP 1 Score: 67.8 bits (164), Expect = 3.910e-9 Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 13 SPRFPRAKEVGWWIVLG-TEDGELLALKRVGTLGPRGYS-TTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
+PRFP++K GWW+VLG T+ GEL+ALKR+GT+ RG + TTL F +PED G L++++D +G+D+Q
Sbjct: 2095 APRFPKSKTEGWWLVLGDTDTGELIALKRLGTI--RGATKTTLSFYTPEDL-GRKIYTLYLISDSYLGLDQQ 2163
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: UPI00106A662D (activating signal cointegrator 1 complex subunit 3-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A662D) HSP 1 Score: 67.8 bits (164), Expect = 3.910e-9 Identity = 33/72 (45.83%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 10 WSPRFPRAKEVGWWIVLGT-EDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
++PRFP+AK+ GWW++LG +DGELLALKR+G + R + +L F +PE+ TG L++++D +G+D+Q
Sbjct: 2117 YAPRFPKAKDAGWWLMLGVIDDGELLALKRIGPIRSRS-TVSLAFYTPEE-TGHKIYTLYLMSDSYIGLDQQ 2186
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A2K3M9D7_TRIPR (U5 small nuclear ribonucleoprotein 200 kDa helicase-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M9D7_TRIPR) HSP 1 Score: 62.4 bits (150), Expect = 9.370e-9 Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 1 GSLWSPRFPRAKEVGWWIVLG-TEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE*D 261
G + +PR+P+AKE GWW+V+G T+ LLA+KRV R T L FP+P DA G VL+ + D +G D++ T V + D
Sbjct: 39 GPVNAPRYPKAKEEGWWLVVGDTKTNMLLAIKRVSL--QRKLKTKLEFPAPSDA-GKKSYVLYFMCDSYIGCDQEYGFTLDVKEADGD 123
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A7D9I4B2_PARCT (Activating signal cointegrator 1 complex subunit 3 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I4B2_PARCT) HSP 1 Score: 65.1 bits (157), Expect = 3.110e-8 Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 10 WSPRFPRAKEVGWWIVLGT-EDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
++PRFP+ K+ GWW+VLG +DGELLALKR+G + R + +L F +PE+ + L+ ++D +G+D+Q
Sbjct: 2033 YAPRFPKTKDAGWWLVLGVVDDGELLALKRIGAIKSRS-TVSLAFYTPEEVGHKI-YTLYFMSDSYIGLDQQ 2102
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A7S4F5P3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F5P3_CHRCT) HSP 1 Score: 64.3 bits (155), Expect = 5.430e-8 Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 13 SPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRG-YSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE 255
+P FP+A+E GWW+V+G ED EL ALKR+ G + T L+F +P D G +H+V+D +G+D+Q + V+ EE
Sbjct: 1444 APAFPKAREGGWWLVMGEED-ELFALKRISLPKNGGVFKTELQFLAP-DEPGEYEYDVHLVSDSYIGLDQQQKVRVVVAAEE 1523
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A7S4BR29_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BR29_CHRCT) HSP 1 Score: 64.3 bits (155), Expect = 5.620e-8 Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 13 SPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRG-YSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE 255
+P FP+A+E GWW+V+G ED EL ALKR+ G + T L+F +P D G +H+V+D +G+D+Q + V+ EE
Sbjct: 2048 APAFPKAREGGWWLVMGEED-ELFALKRISLPKNGGVFKTELQFLAP-DEPGEYEYDVHLVSDSYIGLDQQQKVRVVVAAEE 2127
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A072URZ7_MEDTR (U5 small nuclear ribonucleoprotein 200 kDa helicase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072URZ7_MEDTR) HSP 1 Score: 61.2 bits (147), Expect = 5.270e-7 Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 1 GSLWSPRFPRAKEVGWWIVLG-TEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE*DTNNAAK 279
G + +PR+P+AKE GWW+V+G T+ LLA+KRV R L+F +P+DA G +L+ + D MG D++ T V + +++K
Sbjct: 799 GPVDAPRYPKAKEEGWWLVVGDTKTNSLLAIKRVSL--QRKLKAKLQFAAPDDA-GKKSYILYFMCDSYMGCDQEYSFTVDVKEADGGDKDSSK 889
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A2Z5TZE8_9NEOP (Putative activating signal cointegrator 1 complex subunit 3 B n=1 Tax=Reticulitermes speratus TaxID=60591 RepID=A0A2Z5TZE8_9NEOP) HSP 1 Score: 60.5 bits (145), Expect = 1.080e-6 Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 7 LWSPRFPRAKEVGWWIVLGT-EDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
++SPRFPR K+ GW + LG+ E GEL+ALKRV + R L F +P+ TG + L L++++D +G+D+Q
Sbjct: 2074 VYSPRFPRRKDEGWLLALGSVETGELMALKRVSAVRSRKNFQQLTFFTPK-MTGRLILTLYILSDCYLGLDQQ 2145 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10842.1231.1 >prot_Ecto-sp8_S_contig10842.1231.1 ID=prot_Ecto-sp8_S_contig10842.1231.1|Name=mRNA_Ecto-sp8_S_contig10842.1231.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp GSLWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPback to top mRNA from alignment at Ecto-sp8_S_contig10842:4380..5811- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10842.1231.1 ID=mRNA_Ecto-sp8_S_contig10842.1231.1|Name=mRNA_Ecto-sp8_S_contig10842.1231.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10842:4380..5811- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10842:4380..5811- >mRNA_Ecto-sp8_S_contig10842.1231.1 ID=mRNA_Ecto-sp8_S_contig10842.1231.1|Name=mRNA_Ecto-sp8_S_contig10842.1231.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10842:4380..5811- (Ectocarpus species8 EcLAC_412)back to top |