mRNA_Ecto-sp8_S_contig10842.1231.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10842.1231.1
Unique NamemRNA_Ecto-sp8_S_contig10842.1231.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.310e-46
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1
Query:    1 GSLWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE 255
            GSLWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE
Sbjct: 2259 GSLWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE 2343          
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A7S2BB24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BB24_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.670e-14
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    7 LWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
            L++P F + K++GWW+ LG EDGELLALKR+GTL    YSTTL F +P +  G   L L +VAD V G+D++
Sbjct:  415 LYTPHFHKPKDLGWWLALGAEDGELLALKRIGTLQNNSYSTTLTFAAPLEH-GATKLALWLVADAVRGLDKR 485          
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: UPI000A2A9723 (activating signal cointegrator 1 complex subunit 3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9723)

HSP 1 Score: 67.8 bits (164), Expect = 3.910e-9
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   13 SPRFPRAKEVGWWIVLG-TEDGELLALKRVGTLGPRGYS-TTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
            +PRFP++K  GWW+VLG T+ GEL+ALKR+GT+  RG + TTL F +PED  G     L++++D  +G+D+Q
Sbjct: 2095 APRFPKSKTEGWWLVLGDTDTGELIALKRLGTI--RGATKTTLSFYTPEDL-GRKIYTLYLISDSYLGLDQQ 2163          
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: UPI00106A662D (activating signal cointegrator 1 complex subunit 3-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A662D)

HSP 1 Score: 67.8 bits (164), Expect = 3.910e-9
Identity = 33/72 (45.83%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   10 WSPRFPRAKEVGWWIVLGT-EDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
            ++PRFP+AK+ GWW++LG  +DGELLALKR+G +  R  + +L F +PE+ TG     L++++D  +G+D+Q
Sbjct: 2117 YAPRFPKAKDAGWWLMLGVIDDGELLALKRIGPIRSRS-TVSLAFYTPEE-TGHKIYTLYLMSDSYIGLDQQ 2186          
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A2K3M9D7_TRIPR (U5 small nuclear ribonucleoprotein 200 kDa helicase-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M9D7_TRIPR)

HSP 1 Score: 62.4 bits (150), Expect = 9.370e-9
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 GSLWSPRFPRAKEVGWWIVLG-TEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE*D 261
            G + +PR+P+AKE GWW+V+G T+   LLA+KRV     R   T L FP+P DA G    VL+ + D  +G D++   T  V   + D
Sbjct:   39 GPVNAPRYPKAKEEGWWLVVGDTKTNMLLAIKRVSL--QRKLKTKLEFPAPSDA-GKKSYVLYFMCDSYIGCDQEYGFTLDVKEADGD 123          
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A7D9I4B2_PARCT (Activating signal cointegrator 1 complex subunit 3 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I4B2_PARCT)

HSP 1 Score: 65.1 bits (157), Expect = 3.110e-8
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   10 WSPRFPRAKEVGWWIVLGT-EDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
            ++PRFP+ K+ GWW+VLG  +DGELLALKR+G +  R  + +L F +PE+    +   L+ ++D  +G+D+Q
Sbjct: 2033 YAPRFPKTKDAGWWLVLGVVDDGELLALKRIGAIKSRS-TVSLAFYTPEEVGHKI-YTLYFMSDSYIGLDQQ 2102          
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A7S4F5P3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F5P3_CHRCT)

HSP 1 Score: 64.3 bits (155), Expect = 5.430e-8
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   13 SPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRG-YSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE 255
            +P FP+A+E GWW+V+G ED EL ALKR+      G + T L+F +P D  G     +H+V+D  +G+D+Q +    V+ EE
Sbjct: 1444 APAFPKAREGGWWLVMGEED-ELFALKRISLPKNGGVFKTELQFLAP-DEPGEYEYDVHLVSDSYIGLDQQQKVRVVVAAEE 1523          
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A7S4BR29_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BR29_CHRCT)

HSP 1 Score: 64.3 bits (155), Expect = 5.620e-8
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   13 SPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRG-YSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE 255
            +P FP+A+E GWW+V+G ED EL ALKR+      G + T L+F +P D  G     +H+V+D  +G+D+Q +    V+ EE
Sbjct: 2048 APAFPKAREGGWWLVMGEED-ELFALKRISLPKNGGVFKTELQFLAP-DEPGEYEYDVHLVSDSYIGLDQQQKVRVVVAAEE 2127          
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A072URZ7_MEDTR (U5 small nuclear ribonucleoprotein 200 kDa helicase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072URZ7_MEDTR)

HSP 1 Score: 61.2 bits (147), Expect = 5.270e-7
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 GSLWSPRFPRAKEVGWWIVLG-TEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATVSREE*DTNNAAK 279
            G + +PR+P+AKE GWW+V+G T+   LLA+KRV     R     L+F +P+DA G    +L+ + D  MG D++   T  V   +    +++K
Sbjct:  799 GPVDAPRYPKAKEEGWWLVVGDTKTNSLLAIKRVSL--QRKLKAKLQFAAPDDA-GKKSYILYFMCDSYMGCDQEYSFTVDVKEADGGDKDSSK 889          
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Match: A0A2Z5TZE8_9NEOP (Putative activating signal cointegrator 1 complex subunit 3 B n=1 Tax=Reticulitermes speratus TaxID=60591 RepID=A0A2Z5TZE8_9NEOP)

HSP 1 Score: 60.5 bits (145), Expect = 1.080e-6
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    7 LWSPRFPRAKEVGWWIVLGT-EDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQ 222
            ++SPRFPR K+ GW + LG+ E GEL+ALKRV  +  R     L F +P+  TG + L L++++D  +G+D+Q
Sbjct: 2074 VYSPRFPRRKDEGWLLALGSVETGELMALKRVSAVRSRKNFQQLTFFTPK-MTGRLILTLYILSDCYLGLDQQ 2145          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10842.1231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI1.310e-46100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2BB24_9STRA7.670e-1452.78Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI000A2A97233.910e-950.00activating signal cointegrator 1 complex subunit 3... [more]
UPI00106A662D3.910e-945.83activating signal cointegrator 1 complex subunit 3... [more]
A0A2K3M9D7_TRIPR9.370e-940.91U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A0A7D9I4B2_PARCT3.110e-843.06Activating signal cointegrator 1 complex subunit 3... [more]
A0A7S4F5P3_CHRCT5.430e-841.46Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4BR29_CHRCT5.620e-841.46Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A072URZ7_MEDTR5.270e-736.17U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A0A2Z5TZE8_9NEOP1.080e-643.84Putative activating signal cointegrator 1 complex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10842contigEcto-sp8_S_contig10842:4380..5811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score178.3
Seed ortholog evalue1.5e-42
Seed eggNOG ortholog2880.D7FN81
Model size787
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12,3.6.4.13
Cds size258
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.5489469-UTR-Ecto-sp8_S_contig10842:4379..49071681143176.5489469-UTR-Ecto-sp8_S_contig10842:4379..4907Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10842 4380..4907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.5592542-CDS-Ecto-sp8_S_contig10842:4907..50691681143176.5592542-CDS-Ecto-sp8_S_contig10842:4907..5069Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10842 4908..5069 -
1681143176.5673492-CDS-Ecto-sp8_S_contig10842:5715..58111681143176.5673492-CDS-Ecto-sp8_S_contig10842:5715..5811Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10842 5716..5811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10842.1231.1prot_Ecto-sp8_S_contig10842.1231.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10842 4908..5811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10842.1231.1

>prot_Ecto-sp8_S_contig10842.1231.1 ID=prot_Ecto-sp8_S_contig10842.1231.1|Name=mRNA_Ecto-sp8_S_contig10842.1231.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp
GSLWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSP
EDATGTVPLVLHVVADGVMGMDRQARATATVSREE*
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mRNA from alignment at Ecto-sp8_S_contig10842:4380..5811-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10842.1231.1 ID=mRNA_Ecto-sp8_S_contig10842.1231.1|Name=mRNA_Ecto-sp8_S_contig10842.1231.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10842:4380..5811- (Ectocarpus species8 EcLAC_412)
GGCTCTCTCTGGTCCCCGCGTTTCCCGAGGGCGAAGGAGGTGGGGTGGTG GATCGTGCTTGGTACGGAGGATGGAGAGCTTCTTGCGCTCAAGAGGGTGA GCGAAAACTGGGGCAGACTATGTAGCAGATTTATGGTTCCTCCATGTCTC GTGTGCGTGCTGGGAAGAGGGGCGGATGGTGTGTTTGGGTTCAAGAGACA CGTGGTGGATGGGACTCCGTGATTTGCCATGGGTCAGGAGGATGATCACC GGCAGGGCGGGAGCAGAACTGCTTGTTTCGACTCAAGAAAGGAAAAACTT ACCGGCTCGATTTGTTTGTTGGCGCCAGGGAGTAGGGAAGAGCGAGGTTT GGGTAAGTTTTCATCATGAGGGTGTGCTAAATAACAGGGTTGCGGCGGTG CGTCAATAAAACGAATCTTGGCTGTTGTTGTTTGCAACCAGGCTGATCGA GTTCTGCAGCAAGATTTACTTCCGAAAAAACTCGATCGTATGCGTTTGCC TCAGCGGCTGGGTTCACCCACGCGACATTCTGGCGATGGAATTGCCGCGT GATCATGTTCACTATTGCGTCTTGATAGAAAAATGCTCTCATATTTGTCC ACAGATTTGTTCCAGCAAACGAGCCAAATGTAAGGATAATAACATCACCA CCAACACTCGCAGGTCTCCTACAATACTGTCGTATGATTGATTCCAACAA CGAAACAACTCTAAGATAACAACACCAAACCAACATCCACAGGTTGGTAC GCTCGGACCCCGCGGGTACAGCACTACCCTGCGCTTTCCTAGCCCGGAGG ACGCCACCGGCACAGTGCCGCTGGTGCTGCACGTCGTCGCAGACGGTGTG ATGGGAATGGACCGGCAAGCACGGGCGACAGCTACCGTGTCTAGAGAAGA GTAGGATACAAACAACGCCGCGAAATAGAACGGAAGGCTGACGCCGTGTC TAGAGAAGAGTAGGGAGACAGGTTTGATTAGGCCACGATCGCGCAGGGGG GATAGAAAGAAAGGCAGCGCAAAGTGATGCGGAGGAGGTCGAGGAGCGGT TTCGTGTGTCGATCGAACGTTTCTAGCGAAGTCCTCGTCTAGGAATGTCG ATGACTTGCTCTAAAGCGCTAGGGGTAAAAGAAGGCCCCAAGGACTCACT AACGCGGCGTTCACCGTGCCCATTTCAGGGCCTGAATTCTGGCCTTGAAG TGTGCTCTTGATGCGAACAAAATTGGCGAGAAGAACGTCGCACGGTGCGC TTTGCTTGGAGTTCATCGGGCGATGGTTCGATCCACTTTGAAGGAATGGG TTCCAATGACGTTACCCACCAGTCGTCCCCGTGGAAGGTGATATCGCGTG ACTCAGATTGAATTATCTCATGTTCTCTTACGCGTGCCGCGTGCCCGGTG CAGGGCAAAAGGCCGGCCAAATATCTTGACAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10842:4380..5811-

>mRNA_Ecto-sp8_S_contig10842.1231.1 ID=mRNA_Ecto-sp8_S_contig10842.1231.1|Name=mRNA_Ecto-sp8_S_contig10842.1231.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10842:4380..5811- (Ectocarpus species8 EcLAC_412)
GGCTCTCTCTGGTCCCCGCGTTTCCCGAGGGCGAAGGAGGTGGGGTGGTG
GATCGTGCTTGGTACGGAGGATGGAGAGCTTCTTGCGCTCAAGAGGGTTG
GTACGCTCGGACCCCGCGGGTACAGCACTACCCTGCGCTTTCCTAGCCCG
GAGGACGCCACCGGCACAGTGCCGCTGGTGCTGCACGTCGTCGCAGACGG
TGTGATGGGAATGGACCGGCAAGCACGGGCGACAGCTACCGTGTCTAGAG
AAGAGTAG
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