mRNA_Ecto-sp8_S_contig10841.1229.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10841.1229.1
Unique NamemRNA_Ecto-sp8_S_contig10841.1229.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10841.1229.1 vs. uniprot
Match: D7G3K3_ECTSI (G-patch domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K3_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.950e-18
Identity = 227/273 (83.15%), Postives = 229/273 (83.88%), Query Frame = 1 
Query:  211 LPTXXXPGTSPMXXXXXXXXXXRGGPALLSTPPPMNDEEGPETGFAGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAEAGRGMPPFGARPHMMGGGRGPRXXPGGMGPGXXDMGVGGSGNMRAGRGGDMXXXXPPPGNFSPTGRGGGRGMFPRGMPMMEPGGDGGGG 1029
            +P+   PG SP           RGGPALLSTPPPMNDEEGPETGFAG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG EAGRGMPPFGARPHMMGGGR   XXPGGMGPG  DMG  GSGNMRAGRGG  XXXX                MFPRGMPMMEPGGD GGG
Sbjct:    1 MPSPPGPGASP-----------RGGPALLSTPPPMNDEEGPETGFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVEAGRGMPPFGARPHMMGGGRXXXXXPGGMGPGPGDMGGRGSGNMRAGRGGXXXXXXXXXXXXXXXXXXXXXXMFPRGMPMMEPGGDRGGG 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10841.1229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3K3_ECTSI1.950e-1883.15G-patch domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10841contigEcto-sp8_S_contig10841:148..4041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score100.5
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog2880.D7G3K3
Preferred nameSUGP1
Model size1627
KEGG koko:K13096
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0031974,GO:0031981,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Exons3
EggNOG free text desc.RNA processing
EggNOG OGsKOG0965@1,KOG0965@2759
Cds size987
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.4064531-UTR-Ecto-sp8_S_contig10841:147..6741681143176.4064531-UTR-Ecto-sp8_S_contig10841:147..674Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10841 148..674 -
1681143176.4150891-UTR-Ecto-sp8_S_contig10841:1346..13481681143176.4150891-UTR-Ecto-sp8_S_contig10841:1346..1348Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10841 1347..1348 -
1681143176.4421577-UTR-Ecto-sp8_S_contig10841:3930..40411681143176.4421577-UTR-Ecto-sp8_S_contig10841:3930..4041Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10841 3931..4041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.4223604-CDS-Ecto-sp8_S_contig10841:1348..18601681143176.4223604-CDS-Ecto-sp8_S_contig10841:1348..1860Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10841 1349..1860 -
1681143176.4305325-CDS-Ecto-sp8_S_contig10841:3455..39301681143176.4305325-CDS-Ecto-sp8_S_contig10841:3455..3930Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10841 3456..3930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10841.1229.1prot_Ecto-sp8_S_contig10841.1229.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10841 1349..3930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10841.1229.1

>prot_Ecto-sp8_S_contig10841.1229.1 ID=prot_Ecto-sp8_S_contig10841.1229.1|Name=mRNA_Ecto-sp8_S_contig10841.1229.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=329bp
MLGNGDGGPPPPPPPRGPGAEDSGPAARRGGPLLPTPPPPGTSPMPSPPG
PGASPRGGPALLSTPPPMNDEEGPETGFAGAPPPPPLRRPVSPRSGSATQ
QEPPPPPPPPRMPSHPAAGGGEGPVNGNNAGGGVPPPPPPRKALPEAAGS
AGGSAPAAGGHDSANNNTSMQGDLQQHPPPLAPPGRPGPPPMRPNNSMPS
GDGGGPGRGPPPPGGAEAGRGMPPFGARPHMMGGGRGPRPPPGGMGPGPG
DMGVGGSGNMRAGRGGDMGGRGPPPGNFSPTGRGGGRGMFPRGMPMMEPG
GDGGGGGVPAATPRDAAASARRPSVSTR*
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mRNA from alignment at Ecto-sp8_S_contig10841:148..4041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10841.1229.1 ID=mRNA_Ecto-sp8_S_contig10841.1229.1|Name=mRNA_Ecto-sp8_S_contig10841.1229.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3894bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10841:148..4041- (Ectocarpus species8 EcLAC_412)
GCCGATGCGATCGCAATCGCGCTCGCTCGCTGGTGCGATTGTTGCTGTGC
AGTACAGCAGTGGCAGCAGGGAGAGGAGCAAGCACGACGAGGACGAAGCT
GAGGTCAGAGAATGTTAGGCAATGGAGACGGTGGGCCTCCACCTCCTCCC
CCACCCCGCGGCCCCGGCGCCGAAGACTCCGGTCCAGCAGCAAGAAGAGG
AGGCCCGCTGCTTCCCACGCCGCCCCCGCCGGGAACCTCGCCGATGCCGT
CTCCTCCCGGCCCCGGTGCATCCCCTCGAGGCGGACCTGCCCTCCTGTCT
ACGCCGCCTCCCATGAACGACGAAGAGGGCCCCGAAACCGGGTTTGCTGG
CGCTCCACCACCACCGCCGCTAAGGCGGCCAGTGTCACCGCGATCAGGAT
CGGCTACCCAGCAGGAGCCACCGCCGCCGCCGCCTCCGCCGAGGATGCCG
TCGCACCCAGCAGCAGGCGGTGGTGAGGGGCCGGTCAATGGCAACAATGC
CGGCGGTGGCGTTCCGCCTCCTCCTCCTCCTAGGAAAGCGCTGCCGGAAG
CGGCTGGTTCCGCCGGTGGATCTGCACCAGCAGCAGGTGAAACGGGGAAT
CGGGCGAAGGAAGAGTAGAGTACCTGCTGTATACGGTGGTGCTTTGCAAT
GGCGATTTAAGGTAGCTTTTGTACTGGCGTCCTTACGGCAAGTACAGCTG
TACTTGGTAGTCGCCGCACCAGCCGTCCAGCGGAATATGGGTATGGCAGC
GACGGGCACGTGAGGTTTGGCTAAGTTCTTGGGTGGTTGTGCTCATCCGG
TCGTGCCAAATTCATTTATCGAGGCGTGGATGCGGTTTTAGGATTCACCC
ATTTGTCAAAGCGCAGCAGCAGCAAGTAAGTAGCCTGGAGCCAAGGGACA
TCAGCCTCTGTGTACGGCCGAACAGCAAGCATGTACAATAGCATATACTC
TGTACACCGCTGAAGCACCATCATCTTGGCCGAATGAATCCTCGGTGGGA
GGTCTTAAACAGACCCGAGAGTCATGGGAGGTCTTAAACAGACCCGAGAG
TCATGGGCTGTGCGCAGCAGGTGTAGTTCAGTCCTCACTGAACTGGCAAC
TACTTTGACGAACTCCTTTGAGAGGTATCCCGGACGGGTAGTTGCTCTGT
TATGCTTGGACCATCTCCTATATGGATAGTCTGCAGTTCTTGAGATTTGG
GTTCGTAGTGAGGACGACAGGACATACCACCCCTTATAGTGCTCTTATTT
GCCGAAAAACTGGGATTTCAAATCCGAGATACTCCCGACTCGCCTTGCCT
GCTCAGCGGGAATTTTCGGCTGGGATTTGGGTTAGAGGTCGTTGTGCAGA
CGTTGTTGCGCGCGCGCGGCACCAAATTGACGTTTGTTTGCACATTGCAC
CACACCCGTGTGTAGTAGGGAGGTGTCGCCATATGTATATGGTGATGGTA
CAGATCAGATGTTGGACGTGTATGTCGACTCTCTACAGTAGTGATCTTAT
ATACACCATCCACCAATCGACATGTCAACTAGCCAGGGTTGTGTGGAGAG
CATTTGGTACGAAGAGGCAAAGAGGACACACACCCTTTCTAAAGGAAAAT
AAGGGCACAGTAGTACAGATCATGGTATCGCTGCTGCTGCTGCATGATGT
CATTTACAAGCATCCCGCCGATGCCTATGTGCTTGTTGTGTGCCGATGAT
GTAGTGCTGCTCAATCAACACATTGCAGGTAAAGTAGGTGTGTGTGTGTC
CCTCCCGATCATACGGCGTGGCAGCTGTTGATGTCGGTCGAGTCAAACCA
GTTTTTCCTTGTTCCGACCGTCAGGGTTGATCTCAAAAACAGCAGCTGCT
CTCTTGTTGGCCCGGGAATGTCCACCTGATTCTGTCGTTTCCAGACAAGA
TGCAGACCTGCCACAAGAGTTGGCCCTACGTATCTGGCTCGACGTCCCTA
AAGGTAGCCAAAGAGTTCCCCAGTCTACGGAACAAGTAGTGAAGATAACA
TTCTGCCATATAGACCATCGGCGGCCTTTCCTACTCAAAATACGATGATT
TTAATGTAGCGGGCATGCGAACGGTAACGACCACGCAGCACGCATCTTGT
TACCTTCGAAACGTGTCTCAAAACCCCCCCGCCACCCCGCCACCCAACTC
TCGTCTTAATCAATCCTGCCCATCGTTTCAGGAGGGCACGACTCCGCGAA
TAACAACACGTCAATGCAAGGGGATCTGCAGCAGCACCCCCCACCCCTCG
CCCCTCCTGGCCGTCCCGGGCCCCCCCCGATGAGGCCGAACAACAGCATG
CCAAGCGGGGATGGAGGTGGGCCTGGGAGAGGACCGCCGCCGCCGGGAGG
AGCCGAAGCGGGGCGAGGCATGCCGCCGTTCGGGGCTCGACCCCATATGA
TGGGAGGAGGACGAGGGCCCCGGCCTCCACCCGGTGGCATGGGTCCGGGG
CCCGGGGACATGGGCGTGGGGGGGAGCGGTAACATGAGGGCGGGGCGAGG
TGGCGACATGGGAGGCCGGGGGCCTCCTCCCGGTAACTTCTCTCCCACCG
GCAGGGGTGGGGGGAGAGGCATGTTCCCTCGGGGAATGCCGATGATGGAG
CCCGGCGGTGACGGGGGGGGGGGGGGGGTCCCCGCCGCCACGCCTCGGGA
TGCTGCCGCCTCGGCCCGGCGGCCCTCAGTCTCCACAAGATGAAGGTGAG
GGTGTTTGATTTCAGGGTCATTTTCAGCACTCGGAAGTGTTGCACAGGTG
TCTGTACCGCTACCTCTATTTAGTGTCTTTTGGATCAAGAATTAGAAACC
CAACAAAACGTGTACAGAGGAGCGTGTTTGTTCTGTTCTTTCCGCGGCAA
ACCACTCACCCGCACCTTGCTTGAGCAGGATTCCATAATGTACATACTTG
TACATCGCAGTGCGACGGCCTTGCTGGCCTTAGTTTATGCGAGTAACGAA
CAACCGGGCAACGAGCGGTTATTGTATCCCTTCGGGAAACACGAGAAGTT
CAGTTTGTTTACCGCCGTTCTTGTGACGAAATGTGTTCCACCTCCGTTAG
CTTCCTCCCGTTGACATCAAGCCTGCCACGGTGTGAATGTTGCCAATGTT
GACCTTCGGATGGAGCATGAACAAATTGTGCCATCCGGGATTTGATTTTT
GGTAGGAGAGGTAGAACAGGCACCTGCTAGATGTGCGGTGCAATAAATAC
GAATGGGAACATTTTGTTTCGAGCGTCCGTGAGAGCCCAAAAAAGCGAAA
ATATTAAAAGCACCCCGTTTTCGACCCGCAGTTGTACTTTTGTAGTGACC
CAACCATATCGATACTCTCTCTCGAAGACCCATCTGCCCGCCCCAACCGG
ACTACTCGATTCCTCAGCGGCCGGTCCACTCAGCGACCCTACTGGACCGC
CATCGGATTCACCCGGATCGGGATCAGGTTCACCACGGCCTTGGTTTCCG
CCGCCGCCGTCTTCGGGCGCGGCCGGGCCAGGGGCCCCGCCGCTGAGAAA
TGTTCCTCCGCGACCCCCCCCCGGTCCACCGGCGCCCCCTTCGGACGTGA
GAGCGCGGTCGCCGACCGCCGCCGGACCCAGCGCAGCAGCGGGAGAGACG
CCCGTGCCGCCAGGAGCCCCGCCGACGCTCCCTCCCATGCTCGCTCGCCC
GCCCATGCTGCCTCCGCCGCCGCCTCCACTCCCGCCCGGGATGGCCGCGC
CGCCGCCCCCGCCGCCGCCGCCCCCGCCGCCGCCGCCCTCTGGGTTATTG
GGGGCCCCGCCGCGGCCCCCGCTGCCCCCGGTGGGGATGATCCCGCCGCT
TCCGCCGGGAGCGGCGCCTCCGCTTCCGCCCGGTCCACCGCCGGCCATGC
CCGTGTTTGCCGACGATGGGAACTTCCTGTCCAAGATGCTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10841:148..4041-

>mRNA_Ecto-sp8_S_contig10841.1229.1 ID=mRNA_Ecto-sp8_S_contig10841.1229.1|Name=mRNA_Ecto-sp8_S_contig10841.1229.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10841:148..4041- (Ectocarpus species8 EcLAC_412)
ATGTTAGGCAATGGAGACGGTGGGCCTCCACCTCCTCCCCCACCCCGCGG
CCCCGGCGCCGAAGACTCCGGTCCAGCAGCAAGAAGAGGAGGCCCGCTGC
TTCCCACGCCGCCCCCGCCGGGAACCTCGCCGATGCCGTCTCCTCCCGGC
CCCGGTGCATCCCCTCGAGGCGGACCTGCCCTCCTGTCTACGCCGCCTCC
CATGAACGACGAAGAGGGCCCCGAAACCGGGTTTGCTGGCGCTCCACCAC
CACCGCCGCTAAGGCGGCCAGTGTCACCGCGATCAGGATCGGCTACCCAG
CAGGAGCCACCGCCGCCGCCGCCTCCGCCGAGGATGCCGTCGCACCCAGC
AGCAGGCGGTGGTGAGGGGCCGGTCAATGGCAACAATGCCGGCGGTGGCG
TTCCGCCTCCTCCTCCTCCTAGGAAAGCGCTGCCGGAAGCGGCTGGTTCC
GCCGGTGGATCTGCACCAGCAGCAGGAGGGCACGACTCCGCGAATAACAA
CACGTCAATGCAAGGGGATCTGCAGCAGCACCCCCCACCCCTCGCCCCTC
CTGGCCGTCCCGGGCCCCCCCCGATGAGGCCGAACAACAGCATGCCAAGC
GGGGATGGAGGTGGGCCTGGGAGAGGACCGCCGCCGCCGGGAGGAGCCGA
AGCGGGGCGAGGCATGCCGCCGTTCGGGGCTCGACCCCATATGATGGGAG
GAGGACGAGGGCCCCGGCCTCCACCCGGTGGCATGGGTCCGGGGCCCGGG
GACATGGGCGTGGGGGGGAGCGGTAACATGAGGGCGGGGCGAGGTGGCGA
CATGGGAGGCCGGGGGCCTCCTCCCGGTAACTTCTCTCCCACCGGCAGGG
GTGGGGGGAGAGGCATGTTCCCTCGGGGAATGCCGATGATGGAGCCCGGC
GGTGACGGGGGGGGGGGGGGGGTCCCCGCCGCCACGCCTCGGGATGCTGC
CGCCTCGGCCCGGCGGCCCTCAGTCTCCACAAGATGA
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