mRNA_Ecto-sp8_S_contig10840.1228.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10840.1228.1
Unique NamemRNA_Ecto-sp8_S_contig10840.1228.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: D8LTU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU7_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 9.880e-171
Identity = 240/307 (78.18%), Postives = 242/307 (78.83%), Query Frame = 1
Query:    1 SCEYTSNDGTTGRMCDPTCEDGDPHGVLFCDTKSGQYGSNCRYCFNDVDRAMKFDTPDNRAIMCDTLLPVGTDAGDDFDGNYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVDIDYTRHGEGAQCNQACAGDENESCGGFNAFDLFRIDSDYTTSAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
            SCEYTSNDGTTGRMCDPTCEDGDPHG+LFCDTKSGQYGSNCRYCFNDVDRAMKFDTPDNRAIMCDTLLPVGTDAGDDFDGNYTHLGCFMDSPDDRVL HKLTDDDDTTAE  Y  C GLR L                                                         +SAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGS GRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE
Sbjct:  128 SCEYTSNDGTTGRMCDPTCEDGDPHGMLFCDTKSGQYGSNCRYCFNDVDRAMKFDTPDNRAIMCDTLLPVGTDAGDDFDGNYTHLGCFMDSPDDRVLGHKLTDDDDTTAEREYLSC-GLRLL--------------------------------------------------------QSSAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 377          
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: A0A6H5K2N3_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N3_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 3.830e-103
Identity = 149/232 (64.22%), Postives = 176/232 (75.86%), Query Frame = 1
Query:  229 DFDGNYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVDIDYTRHGEGAQ-CNQACAGDENESCGGFNAFDLFRIDSDYTTSAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
            D D NYTHLGCF+D   DRV+ HK+ D++  T EFCYDYC+G  A  MATQ+G ECWCATEVD++Y RHGE  + C+  C GD+ E+CGG+NAFDL+ I+S   T+   P+GA ++DIV+II+V G +PGGA WADSYSVG KCYM TTFDH IGE  VDTP G MKI DL+++LE GPGS G PLYNDIQCGNGP N  +  DE  CPGLV  G EGCGQIGP WDLSELE
Sbjct:   37 DSDRNYTHLGCFVDKKSDRVMGHKIADEEVDT-EFCYDYCLGENAPLMATQWGIECWCATEVDLEYERHGEAEELCDYKCGGDKTENCGGYNAFDLYVIES--LTTIERPDGAMNDDIVKIIDVPGDNPGGAGWADSYSVGSKCYMSTTFDHGIGEQLVDTPIGEMKIRDLYDMLEKGPGSAGHPLYNDIQCGNGPANDAA--DETNCPGLVMEGPEGCGQIGPKWDLSELE 263          
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: D7FZB0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB0_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 2.790e-102
Identity = 150/231 (64.94%), Postives = 176/231 (76.19%), Query Frame = 1
Query:  229 DFDGNYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVDIDYTRHGEGAQ-CNQACAGDENESCGGFNAFDLFRIDSDYTTSAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 918
            D + +YTHLGCF+D+  DRVL HKL D++  T EFCYDYC+   A +MATQ+G ECWCATEVD++Y RHGE  + C+  C GD NE CGG+ AFDL+ I+S +TT    PEGA ++DIV+IIEV G +PGGA WADSYSVG KCYM TTFDH IGE  VDTP G +KI DL+++LE GPGS GRPLYNDIQCGNGP N  +  DE  CPGLV  G EGCGQIGP WDLSEL
Sbjct:   42 DSNRDYTHLGCFVDNQSDRVLGHKLVDEEVDT-EFCYDYCLEKNAPFMATQWGIECWCATEVDLEYERHGEAEELCDYKCGGDNNEICGGYYAFDLYEIES-FTTIDGPPEGAMNDDIVKIIEVPGANPGGAGWADSYSVGSKCYMSTTFDHGIGEELVDTPIGEVKIRDLYDMLEAGPGSVGRPLYNDIQCGNGPANDAA--DETECPGLVMEGPEGCGQIGPKWDLSEL 268          
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: D8LTU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU8_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 1.310e-100
Identity = 171/328 (52.13%), Postives = 194/328 (59.15%), Query Frame = 1
Query:  241 NYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVD--IDYTRHGEGAQCNQACAGDENESCGGFNAFDLFRIDSDYTTS----AATP-----------------------------------------------------------------------------------------------EGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
            +YT++GCF DS  DR+L  +LT+  + T EFCYDYC+   A +MATQ+  ECWC +E +  +DY RHGEGAQCN  CAGDE+ESCGGF+AFDL+RI + YTTS    A TP                                                                                               EGAFSEDIV+II+VEG  PGGA WADSYSVG KCYMQTTFDH IGEVEVDTPQGTMKIEDLF LLEPGPGS GRPLYNDIQCGNGPVNSD++ DE +CPGLVEYG EGCGQIGP+WDLSELE
Sbjct:  559 DYTYVGCFKDSQQDRILGDQLTNSQEMTTEFCYDYCITKDATFMATQYAIECWCTSEPEDQVDYARHGEGAQCNYDCAGDEDESCGGFDAFDLYRIGAAYTTSDGGTAPTPVDGETNNDQGNDTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETTISDVTLEGAFSEDIVRIIDVEGVVPGGASWADSYSVGSKCYMQTTFDHGIGEVEVDTPQGTMKIEDLFFLLEPGPGSEGRPLYNDIQCGNGPVNSDNILDEIVCPGLVEYGIEGCGQIGPLWDLSELE 886          
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: D8LNN0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN0_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 6.270e-94
Identity = 147/253 (58.10%), Postives = 167/253 (66.01%), Query Frame = 1
Query:  241 NYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVDIDYTRHGE-GAQCNQACAGDENESCGGFNAFDLFRIDSDYTT--------------------------SAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 918
            +YTHLGCF+D   DRVL +KL D++  T EFCYDYC    A  MATQ+G ECWCA EVD+DY RHGE G  C+  C GD  E CGG+NAFDL+ I+S  T                           S   P+GA ++DIV+IIEV G  PGGA WADSYSVG KCYM TTFDH IGE  VDTP G MKI DL+++L+ GPGS GRPLYNDIQCGNGP N  +  DE  CPGLV  G  GCGQIGP WDLSEL
Sbjct:   41 DYTHLGCFVDKKSDRVLGNKLADEEVDT-EFCYDYCEEQNAPLMATQWGIECWCANEVDLDYERHGEAGELCDYKCGGDNKEICGGYNAFDLYVIESLTTIDIDDGPSPTXXXXXXXXXXXXVQEEESDGRPDGAMNDDIVKIIEVPGATPGGAGWADSYSVGSKCYMSTTFDHGIGEEVVDTPIGEMKIRDLYDMLQAGPGSAGRPLYNDIQCGNGPANDAA--DETECPGLVTEGEAGCGQIGPKWDLSEL 290          
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: A0A6H5JZU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU9_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 3.970e-73
Identity = 130/267 (48.69%), Postives = 150/267 (56.18%), Query Frame = 1
Query:  355 LRALWMATQFGKECWCATEV--DIDYTRHGEGAQCNQACAGDENESCGGFNAFDLFRIDSDYTTS----AATP------------------------------------------------------------------------EGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
            + A   ATQ+  ECWC +E    +DY  HGEGA CN  CAGDE+ESCGG +AFD++RI + YTTS    A TP                                                                        EGA SEDIV+II+VEG  PGGA W+DSYSVG KCYMQTTFDHDIGEV VD PQG MKI +LF+LLE GPGS  +PLYNDIQC NGP NS  + D+ LCPGLV+YG + CGQIGP+ DLSELE
Sbjct:    1 MDATLTATQYAIECWCTSEPKDQVDYACHGEGALCNYDCAGDEDESCGGLSAFDVYRIGAAYTTSDGDTAPTPVDGEANNDQDNRTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDVTIEGALSEDIVRIIDVEGVVPGGASWSDSYSVGSKCYMQTTFDHDIGEVVVDPPQGPMKIGELFDLLELGPGSQDQPLYNDIQCENGPTNSHQILDKILCPGLVQYGIKDCGQIGPLRDLSELE 267          
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: B7GED4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GED4_PHATC)

HSP 1 Score: 146 bits (369), Expect = 1.130e-37
Identity = 69/117 (58.97%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  574 DIVQIIEVEG-TDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
            DIV +I+V G   P G  WADSYS G KCY  TTFDHDI +V V+TPQG M I     LL PGPG  GRP+YNDIQCGNGP N+   GDE +CPG  + G EGCGQIGP W+   ++
Sbjct:  204 DIVAVIDVVGGVTPNGRSWADSYSFGNKCYCATTFDHDIADVLVETPQGWMTIRQACELLGPGPGIEGRPVYNDIQCGNGPPNN--AGDEHVCPGRTDLGPEGCGQIGPRWNFDAIK 318          
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: B7G9L2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9L2_PHATC)

HSP 1 Score: 139 bits (349), Expect = 1.960e-33
Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  574 DIVQIIEVEG-TDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 918
            DIV +++V G   P G  WADSYSV  KCY  TTFDH + +V V+TP+G M       LL PGPG  GRP+YNDIQCGNGP N+   GDE +CPG  + G EGCGQIGP W+   +
Sbjct:  164 DIVAVVDVVGGVTPNGRSWADSYSVNDKCYCATTFDHSVADVIVETPRGRMTTRQACELLGPGPGIEGRPVYNDIQCGNGPPNN--AGDEHVCPGRTDIGPEGCGQIGPRWNFDAV 277          
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: B7S3K5_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7S3K5_PHATC)

HSP 1 Score: 128 bits (321), Expect = 5.990e-32
Identity = 69/154 (44.81%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  574 DIVQIIEVEG-TDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEY-------------------------------------GREGCGQIGPMWDLSELE 921
            DIV +I+V G   P G  WADSYS G KCY  TTFDHDI +V V+TPQG M I     LL PGPG  GRP+YNDIQCGNGP N+   GDE +CPG  +                                      G EGCGQIGP W+   ++
Sbjct:   37 DIVAVIDVVGGVTPNGRSWADSYSFGNKCYCATTFDHDIADVLVETPQGWMTIRQACELLGPGPGIEGRPVYNDIQCGNGPPNN--AGDEHVCPGRTDVRRLERGRLASIFRPLFSRTVYNEMPHHDASPLYNSQLGPEGCGQIGPRWNFDAIK 188          
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: A0A7S1UW11_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UW11_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.590e-31
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  580 VQIIEVEGTD-PGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPG-SGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDL 909
            V +I++ G + PGG  WADSYSVGG C+  +T+DH+IG    DTP G M ++ +   L PGPG +   P+YNDIQCGNGP NS   GDE  CPG V+ G++GCG IGP W+L
Sbjct:    1 VVVIDIVGEENPGGLGWADSYSVGGDCFCISTYDHNIGTFMYDTPSGYMSVQSICEGLGPGPGRTDDTPIYNDIQCGNGPPNS--AGDEQRCPGRVDIGKDGCGHIGPKWNL 110          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTU7_ECTSI9.880e-17178.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2N3_9PHAE3.830e-10364.22WSC domain-containing protein n=2 Tax=Ectocarpus s... [more]
D7FZB0_ECTSI2.790e-10264.94WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTU8_ECTSI1.310e-10052.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNN0_ECTSI6.270e-9458.10WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZU9_9PHAE3.970e-7348.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B7GED4_PHATC1.130e-3758.97Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
B7G9L2_PHATC1.960e-3355.17Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
B7S3K5_PHATC5.990e-3244.81Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S1UW11_9STRA3.590e-3153.57Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10840contigEcto-sp8_S_contig10840:3378..6692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score489.2
Seed ortholog evalue1.4e-135
Seed eggNOG ortholog2880.D8LTU7
Model size924
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2EPZM@1,2ST37@2759
Cds size924
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10840.1228.1prot_Ecto-sp8_S_contig10840.1228.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10840 3378..6692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.3208323-CDS-Ecto-sp8_S_contig10840:3377..37591681143176.3208323-CDS-Ecto-sp8_S_contig10840:3377..3759Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10840 3378..3759 -
1681143176.3325474-CDS-Ecto-sp8_S_contig10840:4123..41881681143176.3325474-CDS-Ecto-sp8_S_contig10840:4123..4188Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10840 4124..4188 -
1681143176.3416595-CDS-Ecto-sp8_S_contig10840:4663..48101681143176.3416595-CDS-Ecto-sp8_S_contig10840:4663..4810Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10840 4664..4810 -
1681143176.3551419-CDS-Ecto-sp8_S_contig10840:5096..51901681143176.3551419-CDS-Ecto-sp8_S_contig10840:5096..5190Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10840 5097..5190 -
1681143176.366725-CDS-Ecto-sp8_S_contig10840:6262..63101681143176.366725-CDS-Ecto-sp8_S_contig10840:6262..6310Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10840 6263..6310 -
1681143176.3752768-CDS-Ecto-sp8_S_contig10840:6504..66921681143176.3752768-CDS-Ecto-sp8_S_contig10840:6504..6692Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10840 6505..6692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10840.1228.1

>prot_Ecto-sp8_S_contig10840.1228.1 ID=prot_Ecto-sp8_S_contig10840.1228.1|Name=mRNA_Ecto-sp8_S_contig10840.1228.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=308bp
SCEYTSNDGTTGRMCDPTCEDGDPHGVLFCDTKSGQYGSNCRYCFNDVDR
AMKFDTPDNRAIMCDTLLPVGTDAGDDFDGNYTHLGCFMDSPDDRVLEHK
LTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVDIDYTRHGEGAQ
CNQACAGDENESCGGFNAFDLFRIDSDYTTSAATPEGAFSEDIVQIIEVE
GTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLL
EPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPM
WDLSELE*
back to top

mRNA from alignment at Ecto-sp8_S_contig10840:3378..6692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10840.1228.1 ID=mRNA_Ecto-sp8_S_contig10840.1228.1|Name=mRNA_Ecto-sp8_S_contig10840.1228.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10840:3378..6692- (Ectocarpus species8 EcLAC_412)
AGCTGCGAGTACACCAGTAACGATGGGACCACGGGGCGCATGTGCGACCC CACGTGCGAGGACGGCGACCCCCACGGCGTGCTATTTTGTGATACAAAGA GCGGCCAGTATGGGAGTAACTGCCGATATTGCTTCAACGACGTCGACAGG GCTATGAAATTCGACACTCCCGACAACCGCGCCATCATGTAAGGGGTCTT GTGCATGTATGTCACGGCGTCCGGTCCGTGTCCATCAGCAAGTCTTCCGG TAGTGATGGTGGCCGGCAAGAACGCATTGGGATAGAACTGGCAGTATATC GTGAGACACGGCAATCGTCATATCGTAGTCCAAACATGGGAATCTCTGCA TATGTCCCGCTTCACTGTATTTTCACTGTCAGGTGCGACACGCTTCTGCC GGTCGGCACCGATGCTGGAGACGATTTTGAGTGAGTGAAGCTTGCGCTGT GGCGGTGACAGGGAGGTTCCTTCTGGAGGATCGGCGTTTATCTTTGAGCT CTTGCCGTTTTGGCGCATGGTGTGTGTCTGGAAGTTGGGGCCGAAGTCTG GCTTGGTCCATCATTCGTTTCTGCCTCCCTGCTATTCATTATTTGTGTCA AAAGGTTTGAAAAAAAAGGTTCACGGAAGTCCATGGAAGTCCATGACACC ATGTCCACGGACGTTCGTGGGAGTCCATGAAACGTTTCATGTTGGAAGTC TATGAAACATTTGAGGGACGTCAGAGAAATATTCCAACGACACCAACTTG CCGGACAAATGAGCCAAAGATGTGTTGAAAACCGAAGTCCATGAAATGTA TGTGTGTGCATGGACTTCCCTAGACTTCCAAGAAAATTTCATTTCTTTAA AAAGTTCCATGGACTTCCACGACATGTTTCATGCAATACTTCATGGAAGT CCATGGAATGTTTCATGGAAGTCCGTGAATGAAATATTTCATGAACGTTC ACGGACATTCATGAATGCATGTCATGAATGTCCGCGAAATGCTTCCATGA AATATTTCACGACAAAGTACTGACATAATTTAAATGGAATGTTTCATGAC AACGAAATCCCATGAAACATCCATGGACTTCCATGAAACGTTCCATGGAA AAGCACGAAAATGTACAAGCTGATTCAGCAAGTTTCACTGCAGGAGCGCC GGTGGCGTCATTTGATCGAGGATACGAACGAATCACAGAAAATGTGCGGC GATCAATTTTCGTGCGGTAACGGTGTGCTGAACGCCATCATTCTGATAAC ATTCTATTGGCAGGTTTTGTACTTCCTCCCGAGGTGCATATCAATCGAGG AGTCGACATTTTGCTGTAAAATATAAGGTCGATATGGTCCAAACGTTCAG CCGAACCACATGTATGTATGTAGGGTTACATCAATGAAGAACATGCCTTC ATGAAAATCCACTAATATCCCCGAAAGTCGTCTATCCGCCGTAACCACCG TACCACTTTGACGGATGCGATCGTACACCCCCTTCGCCTCAACGACGTGC AGTGGCAACTACACGCACCTGGGATGCTTCATGGACAGCCCGGATGATCG CGTTCTCGAACACAAGTTGACTGATGACGACGACACGACCGCCGAAGTAC GTATCGCAGAAAACACCGTCGGAAGAGAATTCACGCTGCACAATCTACAG TACGAAAAGTCTTGTGCTCATGCAGACACCATGCCCGCACTCGACGGTGG GATAATACTTGACCCAATAGCACAGCACACTGTAAGGCTGTCTCTTGCGG AGTCTAACTGAACGCAAGGCTAGTTCAAGTGGCGCCCTTGGTTTCTATTT TCTAGCTCTTCGTGGTTGAGCTGATACTGGCGCCCCCACCGATCTGACGC TGTGCATGTATTATTGTTCGGTTTCCATCCAGTTTTGCTACGACTACTGC GTGGGCTTGCGAGCCCTGTGGATGGCTACCCAGTTCGGGAAGGAGTGCTG GTGCGCAACCGAGGTTGATATCGACTATACGCGCCACGGAGAGGGAGCGC AATGTAACCAGGCTTGCGCCGGCGATGAGGTATTAATGGATGGGAAACGA ATTGCAGTCAAAGTGTGTCGTCCGTCGCCGATGGTCACATTGCGGCGAAG AAGTTGCGACAAGCACCATCCCTGCCGGTCGCATGTCACACAACGACACG AGACGCACAAGGTTCCGGGTAGTGGCGGAAACTATGGACTTACGTAATGT GAATATTTTCAAGCTATGCCACTGAAATCTCGCGTGTTTCGTACGTTTAA CCCCCCCCAACGTTCAACTGCGACACCCACGTGCTTGTCGGTATTGTCAT CAATACCTTACAATATTACAGTACAGGATATAGTGGGACAATAAACCTTT TTAAATTGGAGCCAATGTCATCACACCAGCTCACTTTCGCCGCCCTTTTC TCTATGTCTGAGCCTGTTTGCCCCTGTCTTCGTCTCTCGCCCCTCTCGCT GTTTCTTTGCCTATTGCTTCCCCCTCCCCCCGCCGGTTTGCTTCCACTTC ACAGAACGAGTCTTGCGGTGGTTTTAATGCTTTCGATTTATTCCGGATCG ACTCGGACTACACCACGAGGTACGACGTCCGACTGAGTGCGTCCTGCTTT CATGCACATAGATAGACTTCGTGAAATGTGCCAGATTCGTACAGTATTTA CCTCACTTCATGCATTTTGGTGTGGGCTCGCATTCCAGTCAACACACGTC AGCTGTTGTGAGCTCTGTTGACCTTGGAAAACGTTACAACTGGCAACTGG CAGACATCTGTGGGCTGATCCTGCTGCCTGCTAATATTTTGTCATAATTC ATCTTCCCTTGATGGCACGGTGCTCCCTTGAGCTCACTCACTCCCACTCC GGAAGAATAAGTTTCATTTATGCTCGAGTATTTTCCGTGCGGCCTACGAC TCCTGCCCGAAGTGAGACGGAGACTACATCAAGCGCTGCGACACCAGAAG GAGCGTTCAGCGAGGACATCGTCCAGATCATCGAAGTCGAAGGCACTGAT CCAGGTGGCGCATATTGGGCTGACAGCTACTCGGTCGGTGGAAAGTGCTA CATGCAGACCACGTTCGATCACGACATTGGCGAGGTGGAGGTGGACACAC CGCAAGGCACCATGAAAATCGAAGATCTCTTTAACCTTCTAGAACCAGGA CCGGGATCTGGAGGCCGACCCCTCTACAACGATATCCAATGCGGAAACGG CCCAGTCAATTCCGATTCCTTAGGCGATGAGTTCCTCTGCCCCGGTCTGG TGGAATACGGCCGGGAAGGTTGCGGACAGATTGGTCCAATGTGGGACCTT TCTGAGCTCGAGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10840:3378..6692-

>mRNA_Ecto-sp8_S_contig10840.1228.1 ID=mRNA_Ecto-sp8_S_contig10840.1228.1|Name=mRNA_Ecto-sp8_S_contig10840.1228.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10840:3378..6692- (Ectocarpus species8 EcLAC_412)
AGCTGCGAGTACACCAGTAACGATGGGACCACGGGGCGCATGTGCGACCC
CACGTGCGAGGACGGCGACCCCCACGGCGTGCTATTTTGTGATACAAAGA
GCGGCCAGTATGGGAGTAACTGCCGATATTGCTTCAACGACGTCGACAGG
GCTATGAAATTCGACACTCCCGACAACCGCGCCATCATGTGCGACACGCT
TCTGCCGGTCGGCACCGATGCTGGAGACGATTTTGATGGCAACTACACGC
ACCTGGGATGCTTCATGGACAGCCCGGATGATCGCGTTCTCGAACACAAG
TTGACTGATGACGACGACACGACCGCCGAATTTTGCTACGACTACTGCGT
GGGCTTGCGAGCCCTGTGGATGGCTACCCAGTTCGGGAAGGAGTGCTGGT
GCGCAACCGAGGTTGATATCGACTATACGCGCCACGGAGAGGGAGCGCAA
TGTAACCAGGCTTGCGCCGGCGATGAGAACGAGTCTTGCGGTGGTTTTAA
TGCTTTCGATTTATTCCGGATCGACTCGGACTACACCACGAGCGCTGCGA
CACCAGAAGGAGCGTTCAGCGAGGACATCGTCCAGATCATCGAAGTCGAA
GGCACTGATCCAGGTGGCGCATATTGGGCTGACAGCTACTCGGTCGGTGG
AAAGTGCTACATGCAGACCACGTTCGATCACGACATTGGCGAGGTGGAGG
TGGACACACCGCAAGGCACCATGAAAATCGAAGATCTCTTTAACCTTCTA
GAACCAGGACCGGGATCTGGAGGCCGACCCCTCTACAACGATATCCAATG
CGGAAACGGCCCAGTCAATTCCGATTCCTTAGGCGATGAGTTCCTCTGCC
CCGGTCTGGTGGAATACGGCCGGGAAGGTTGCGGACAGATTGGTCCAATG
TGGGACCTTTCTGAGCTCGAGTAG
back to top