mRNA_Ecto-sp8_S_contig10840.1228.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: D8LTU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU7_ECTSI) HSP 1 Score: 487 bits (1253), Expect = 9.880e-171 Identity = 240/307 (78.18%), Postives = 242/307 (78.83%), Query Frame = 1
Query: 1 SCEYTSNDGTTGRMCDPTCEDGDPHGVLFCDTKSGQYGSNCRYCFNDVDRAMKFDTPDNRAIMCDTLLPVGTDAGDDFDGNYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVDIDYTRHGEGAQCNQACAGDENESCGGFNAFDLFRIDSDYTTSAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
SCEYTSNDGTTGRMCDPTCEDGDPHG+LFCDTKSGQYGSNCRYCFNDVDRAMKFDTPDNRAIMCDTLLPVGTDAGDDFDGNYTHLGCFMDSPDDRVL HKLTDDDDTTAE Y C GLR L +SAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGS GRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE
Sbjct: 128 SCEYTSNDGTTGRMCDPTCEDGDPHGMLFCDTKSGQYGSNCRYCFNDVDRAMKFDTPDNRAIMCDTLLPVGTDAGDDFDGNYTHLGCFMDSPDDRVLGHKLTDDDDTTAEREYLSC-GLRLL--------------------------------------------------------QSSAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 377
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: A0A6H5K2N3_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N3_9PHAE) HSP 1 Score: 311 bits (797), Expect = 3.830e-103 Identity = 149/232 (64.22%), Postives = 176/232 (75.86%), Query Frame = 1
Query: 229 DFDGNYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVDIDYTRHGEGAQ-CNQACAGDENESCGGFNAFDLFRIDSDYTTSAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
D D NYTHLGCF+D DRV+ HK+ D++ T EFCYDYC+G A MATQ+G ECWCATEVD++Y RHGE + C+ C GD+ E+CGG+NAFDL+ I+S T+ P+GA ++DIV+II+V G +PGGA WADSYSVG KCYM TTFDH IGE VDTP G MKI DL+++LE GPGS G PLYNDIQCGNGP N + DE CPGLV G EGCGQIGP WDLSELE
Sbjct: 37 DSDRNYTHLGCFVDKKSDRVMGHKIADEEVDT-EFCYDYCLGENAPLMATQWGIECWCATEVDLEYERHGEAEELCDYKCGGDKTENCGGYNAFDLYVIES--LTTIERPDGAMNDDIVKIIDVPGDNPGGAGWADSYSVGSKCYMSTTFDHGIGEQLVDTPIGEMKIRDLYDMLEKGPGSAGHPLYNDIQCGNGPANDAA--DETNCPGLVMEGPEGCGQIGPKWDLSELE 263
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: D7FZB0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB0_ECTSI) HSP 1 Score: 309 bits (792), Expect = 2.790e-102 Identity = 150/231 (64.94%), Postives = 176/231 (76.19%), Query Frame = 1
Query: 229 DFDGNYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVDIDYTRHGEGAQ-CNQACAGDENESCGGFNAFDLFRIDSDYTTSAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 918
D + +YTHLGCF+D+ DRVL HKL D++ T EFCYDYC+ A +MATQ+G ECWCATEVD++Y RHGE + C+ C GD NE CGG+ AFDL+ I+S +TT PEGA ++DIV+IIEV G +PGGA WADSYSVG KCYM TTFDH IGE VDTP G +KI DL+++LE GPGS GRPLYNDIQCGNGP N + DE CPGLV G EGCGQIGP WDLSEL
Sbjct: 42 DSNRDYTHLGCFVDNQSDRVLGHKLVDEEVDT-EFCYDYCLEKNAPFMATQWGIECWCATEVDLEYERHGEAEELCDYKCGGDNNEICGGYYAFDLYEIES-FTTIDGPPEGAMNDDIVKIIEVPGANPGGAGWADSYSVGSKCYMSTTFDHGIGEELVDTPIGEVKIRDLYDMLEAGPGSVGRPLYNDIQCGNGPANDAA--DETECPGLVMEGPEGCGQIGPKWDLSEL 268
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: D8LTU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU8_ECTSI) HSP 1 Score: 323 bits (829), Expect = 1.310e-100 Identity = 171/328 (52.13%), Postives = 194/328 (59.15%), Query Frame = 1
Query: 241 NYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVD--IDYTRHGEGAQCNQACAGDENESCGGFNAFDLFRIDSDYTTS----AATP-----------------------------------------------------------------------------------------------EGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
+YT++GCF DS DR+L +LT+ + T EFCYDYC+ A +MATQ+ ECWC +E + +DY RHGEGAQCN CAGDE+ESCGGF+AFDL+RI + YTTS A TP EGAFSEDIV+II+VEG PGGA WADSYSVG KCYMQTTFDH IGEVEVDTPQGTMKIEDLF LLEPGPGS GRPLYNDIQCGNGPVNSD++ DE +CPGLVEYG EGCGQIGP+WDLSELE
Sbjct: 559 DYTYVGCFKDSQQDRILGDQLTNSQEMTTEFCYDYCITKDATFMATQYAIECWCTSEPEDQVDYARHGEGAQCNYDCAGDEDESCGGFDAFDLYRIGAAYTTSDGGTAPTPVDGETNNDQGNDTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETTISDVTLEGAFSEDIVRIIDVEGVVPGGASWADSYSVGSKCYMQTTFDHGIGEVEVDTPQGTMKIEDLFFLLEPGPGSEGRPLYNDIQCGNGPVNSDNILDEIVCPGLVEYGIEGCGQIGPLWDLSELE 886
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: D8LNN0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN0_ECTSI) HSP 1 Score: 289 bits (739), Expect = 6.270e-94 Identity = 147/253 (58.10%), Postives = 167/253 (66.01%), Query Frame = 1
Query: 241 NYTHLGCFMDSPDDRVLEHKLTDDDDTTAEFCYDYCVGLRALWMATQFGKECWCATEVDIDYTRHGE-GAQCNQACAGDENESCGGFNAFDLFRIDSDYTT--------------------------SAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 918
+YTHLGCF+D DRVL +KL D++ T EFCYDYC A MATQ+G ECWCA EVD+DY RHGE G C+ C GD E CGG+NAFDL+ I+S T S P+GA ++DIV+IIEV G PGGA WADSYSVG KCYM TTFDH IGE VDTP G MKI DL+++L+ GPGS GRPLYNDIQCGNGP N + DE CPGLV G GCGQIGP WDLSEL
Sbjct: 41 DYTHLGCFVDKKSDRVLGNKLADEEVDT-EFCYDYCEEQNAPLMATQWGIECWCANEVDLDYERHGEAGELCDYKCGGDNKEICGGYNAFDLYVIESLTTIDIDDGPSPTXXXXXXXXXXXXVQEEESDGRPDGAMNDDIVKIIEVPGATPGGAGWADSYSVGSKCYMSTTFDHGIGEEVVDTPIGEMKIRDLYDMLQAGPGSAGRPLYNDIQCGNGPANDAA--DETECPGLVTEGEAGCGQIGPKWDLSEL 290
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: A0A6H5JZU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU9_9PHAE) HSP 1 Score: 235 bits (599), Expect = 3.970e-73 Identity = 130/267 (48.69%), Postives = 150/267 (56.18%), Query Frame = 1
Query: 355 LRALWMATQFGKECWCATEV--DIDYTRHGEGAQCNQACAGDENESCGGFNAFDLFRIDSDYTTS----AATP------------------------------------------------------------------------EGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
+ A ATQ+ ECWC +E +DY HGEGA CN CAGDE+ESCGG +AFD++RI + YTTS A TP EGA SEDIV+II+VEG PGGA W+DSYSVG KCYMQTTFDHDIGEV VD PQG MKI +LF+LLE GPGS +PLYNDIQC NGP NS + D+ LCPGLV+YG + CGQIGP+ DLSELE
Sbjct: 1 MDATLTATQYAIECWCTSEPKDQVDYACHGEGALCNYDCAGDEDESCGGLSAFDVYRIGAAYTTSDGDTAPTPVDGEANNDQDNRTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDVTIEGALSEDIVRIIDVEGVVPGGASWSDSYSVGSKCYMQTTFDHDIGEVVVDPPQGPMKIGELFDLLELGPGSQDQPLYNDIQCENGPTNSHQILDKILCPGLVQYGIKDCGQIGPLRDLSELE 267
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: B7GED4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GED4_PHATC) HSP 1 Score: 146 bits (369), Expect = 1.130e-37 Identity = 69/117 (58.97%), Postives = 80/117 (68.38%), Query Frame = 1
Query: 574 DIVQIIEVEG-TDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 921
DIV +I+V G P G WADSYS G KCY TTFDHDI +V V+TPQG M I LL PGPG GRP+YNDIQCGNGP N+ GDE +CPG + G EGCGQIGP W+ ++
Sbjct: 204 DIVAVIDVVGGVTPNGRSWADSYSFGNKCYCATTFDHDIADVLVETPQGWMTIRQACELLGPGPGIEGRPVYNDIQCGNGPPNN--AGDEHVCPGRTDLGPEGCGQIGPRWNFDAIK 318
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: B7G9L2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9L2_PHATC) HSP 1 Score: 139 bits (349), Expect = 1.960e-33 Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 1
Query: 574 DIVQIIEVEG-TDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 918
DIV +++V G P G WADSYSV KCY TTFDH + +V V+TP+G M LL PGPG GRP+YNDIQCGNGP N+ GDE +CPG + G EGCGQIGP W+ +
Sbjct: 164 DIVAVVDVVGGVTPNGRSWADSYSVNDKCYCATTFDHSVADVIVETPRGRMTTRQACELLGPGPGIEGRPVYNDIQCGNGPPNN--AGDEHVCPGRTDIGPEGCGQIGPRWNFDAV 277
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: B7S3K5_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7S3K5_PHATC) HSP 1 Score: 128 bits (321), Expect = 5.990e-32 Identity = 69/154 (44.81%), Postives = 80/154 (51.95%), Query Frame = 1
Query: 574 DIVQIIEVEG-TDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEY-------------------------------------GREGCGQIGPMWDLSELE 921
DIV +I+V G P G WADSYS G KCY TTFDHDI +V V+TPQG M I LL PGPG GRP+YNDIQCGNGP N+ GDE +CPG + G EGCGQIGP W+ ++
Sbjct: 37 DIVAVIDVVGGVTPNGRSWADSYSFGNKCYCATTFDHDIADVLVETPQGWMTIRQACELLGPGPGIEGRPVYNDIQCGNGPPNN--AGDEHVCPGRTDVRRLERGRLASIFRPLFSRTVYNEMPHHDASPLYNSQLGPEGCGQIGPRWNFDAIK 188
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Match: A0A7S1UW11_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UW11_9STRA) HSP 1 Score: 127 bits (320), Expect = 3.590e-31 Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 580 VQIIEVEGTD-PGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPG-SGGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDL 909
V +I++ G + PGG WADSYSVGG C+ +T+DH+IG DTP G M ++ + L PGPG + P+YNDIQCGNGP NS GDE CPG V+ G++GCG IGP W+L
Sbjct: 1 VVVIDIVGEENPGGLGWADSYSVGGDCFCISTYDHNIGTFMYDTPSGYMSVQSICEGLGPGPGRTDDTPIYNDIQCGNGPPNS--AGDEQRCPGRVDIGKDGCGHIGPKWNL 110 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10840.1228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10840.1228.1 >prot_Ecto-sp8_S_contig10840.1228.1 ID=prot_Ecto-sp8_S_contig10840.1228.1|Name=mRNA_Ecto-sp8_S_contig10840.1228.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=308bp SCEYTSNDGTTGRMCDPTCEDGDPHGVLFCDTKSGQYGSNCRYCFNDVDRback to top mRNA from alignment at Ecto-sp8_S_contig10840:3378..6692- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10840.1228.1 ID=mRNA_Ecto-sp8_S_contig10840.1228.1|Name=mRNA_Ecto-sp8_S_contig10840.1228.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10840:3378..6692- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10840:3378..6692- >mRNA_Ecto-sp8_S_contig10840.1228.1 ID=mRNA_Ecto-sp8_S_contig10840.1228.1|Name=mRNA_Ecto-sp8_S_contig10840.1228.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10840:3378..6692- (Ectocarpus species8 EcLAC_412)back to top |