mRNA_Ecto-sp8_S_contig1084.1227.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1084.1227.1
Unique NamemRNA_Ecto-sp8_S_contig1084.1227.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1084.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1084contigEcto-sp8_S_contig1084:16715..17143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size431
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.231224-UTR-Ecto-sp8_S_contig1084:16714..167891681143176.231224-UTR-Ecto-sp8_S_contig1084:16714..16789Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1084 16715..16789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.2400472-CDS-Ecto-sp8_S_contig1084:16789..171431681143176.2400472-CDS-Ecto-sp8_S_contig1084:16789..17143Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1084 16790..17143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1084.1227.1prot_Ecto-sp8_S_contig1084.1227.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1084 16790..17143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1084.1227.1

>prot_Ecto-sp8_S_contig1084.1227.1 ID=prot_Ecto-sp8_S_contig1084.1227.1|Name=mRNA_Ecto-sp8_S_contig1084.1227.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=118bp
MYIVGASGAETDTYLVHSSKAKMLSLTPLPLQHCYLRSMTLLLKSAGPYL
SFHSNPGKESADNVHHTITYKPHGWTILPVSSRTWKYFCTGTSLFVTSSH
VALHVSALLPTDVPQGFP
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mRNA from alignment at Ecto-sp8_S_contig1084:16715..17143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1084.1227.1 ID=mRNA_Ecto-sp8_S_contig1084.1227.1|Name=mRNA_Ecto-sp8_S_contig1084.1227.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1084:16715..17143+ (Ectocarpus species8 EcLAC_412)
CCCATTATTGGATTCTGTCGTCTGCCCCTCTGGCCCCCTTTCTCCACTTC
TACTAGCTAGACGACCCAACCGAACATGTACATCGTTGGTGCGTCGGGTG
CCGAAACTGATACATACTTGGTCCATTCCTCTAAGGCCAAAATGTTGTCC
TTAACCCCCCTCCCCCTCCAACACTGCTACCTACGTTCGATGACGCTCTT
GCTTAAATCTGCCGGGCCGTACCTTTCATTTCACTCCAACCCTGGAAAAG
AAAGCGCAGACAATGTACACCACACTATTACCTACAAACCACATGGATGG
ACGATCCTTCCTGTTTCCTCGCGTACTTGGAAGTATTTTTGTACAGGCAC
GTCGTTGTTCGTCACGTCCTCTCATGTTGCTCTTCACGTTTCCGCACTAC
TACCGACCGACGTTCCTCAAGGATTCCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1084:16715..17143+

>mRNA_Ecto-sp8_S_contig1084.1227.1 ID=mRNA_Ecto-sp8_S_contig1084.1227.1|Name=mRNA_Ecto-sp8_S_contig1084.1227.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1084:16715..17143+ (Ectocarpus species8 EcLAC_412)
ATGTACATCGTTGGTGCGTCGGGTGCCGAAACTGATACATACTTGGTCCA
TTCCTCTAAGGCCAAAATGTTGTCCTTAACCCCCCTCCCCCTCCAACACT
GCTACCTACGTTCGATGACGCTCTTGCTTAAATCTGCCGGGCCGTACCTT
TCATTTCACTCCAACCCTGGAAAAGAAAGCGCAGACAATGTACACCACAC
TATTACCTACAAACCACATGGATGGACGATCCTTCCTGTTTCCTCGCGTA
CTTGGAAGTATTTTTGTACAGGCACGTCGTTGTTCGTCACGTCCTCTCAT
GTTGCTCTTCACGTTTCCGCACTACTACCGACCGACGTTCCTCAAGGATT
CCCC
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