mRNA_Ecto-sp8_S_contig1083.1221.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1083.1221.1
Unique NamemRNA_Ecto-sp8_S_contig1083.1221.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1083.1221.1 vs. uniprot
Match: D7FQJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ8_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 4.240e-133
Identity = 195/203 (96.06%), Postives = 199/203 (98.03%), Query Frame = 1 
Query:    1 MSRPSSRNAARPKTPVSRSYERPEPKRIISKHSGTVLEEGLPACEKAELSDDQYEAARAAFRAEAGGASRLGPQAVKRALPRLDDALFQRLVEDRWHSYTDSDDAEHGPGGGGDSVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEELVRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALCGKDLIMQPRDKV 609
            MSRPSSRNAARPKTPVSRSYERPEPKRIISKH GTVLE+GLPACE AELSDDQYEAARAAFRAEAGGASRLGPQAVKRAL RLDDALFQRLVEDRWHSYTDSDDA+HGPGGGG+SVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEELVR+LILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALCGKDLIMQPRDK 
Sbjct:    1 MSRPSSRNAARPKTPVSRSYERPEPKRIISKHLGTVLEDGLPACE-AELSDDQYEAARAAFRAEAGGASRLGPQAVKRALLRLDDALFQRLVEDRWHSYTDSDDADHGPGGGGNSVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEELVRQLILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALCGKDLIMQPRDKA 202
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BLAST of mRNA_Ecto-sp8_S_contig1083.1221.1 vs. uniprot
Match: A0A6H5LA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA60_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 1.540e-126
Identity = 191/207 (92.27%), Postives = 195/207 (94.20%), Query Frame = 1 
Query:    1 MSRPSSRNAARPKTPVSRSYERPEPKRIISKHSGTVLEEGLPACEKAELSDDQYEAARAAFRAEAGGASRLGPQAVKRALP----RLDDALFQRLVEDRWHSYTDSDDAEHGPGGGGDSVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEELVRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALCGKDLIMQPRDKV 609
            MSRPSSRNAARP+ PVSRSYERPEPKRIISKHSGTVLE+GL ACEK ELSDDQYEAARAAFRAEA GA RLGPQAVKRAL     RLDDALFQRLVEDRWHSYTDSDDA+HGPGGGGDSVDVDGFA VYGSVAAPAITFGRHLRKAAGRGD+ELVRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALCGKDLIMQPRDK 
Sbjct:    1 MSRPSSRNAARPRIPVSRSYERPEPKRIISKHSGTVLEDGLLACEKVELSDDQYEAARAAFRAEAEGAPRLGPQAVKRALLSLNLRLDDALFQRLVEDRWHSYTDSDDADHGPGGGGDSVDVDGFALVYGSVAAPAITFGRHLRKAAGRGDKELVRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALCGKDLIMQPRDKA 207
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BLAST of mRNA_Ecto-sp8_S_contig1083.1221.1 vs. uniprot
Match: A0A835ZCP7_9STRA (Ankyrin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.490e-27
Identity = 71/162 (43.83%), Postives = 88/162 (54.32%), Query Frame = 1 
Query:  139 AELSDDQYEAARAAFR-AEAGGASRLGPQAVKRALPRL----DDALFQRLVEDRWHSYTDSDDAEHGPGGGGDSVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEELVRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALCGKDLIMQPRDKV 609
            AEL++DQ   ARAAF  A+A  A R+   A + AL RL    DDALF+RL   RW  Y            G D V  +GF  ++   AAP+  +G  LRKAAGRGD  +VREL++RGC  NT  G G  AL   AA G VD AK L+   G +L +   D  
Sbjct:   25 AELTEDQLNDARAAFAGADAAAAGRISQAAARAALARLGLQLDDALFERLARARWAEY------------GRDDVSCEGFVALFALAAAPSRKYGAQLRKAAGRGDVAVVRELLMRGCGVNTADGNGMPALQHAAAAGLVDVAKLLKQCAGAELEVNTADNT 174
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BLAST of mRNA_Ecto-sp8_S_contig1083.1221.1 vs. uniprot
Match: A0A7S1CKK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKK1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.130e-18
Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:  244 RLDDALFQRLVEDRWHSYTDSDDAEHGPGGGGDSVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEELVRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALCGKDLIMQPRDKVRGG 618
            RLDD  F R V+  W   T++D+   G       + +D F  +Y  V AP   +G  LR+AA RG  ++VR+L+ RGCNPNTG G G TA+H    FG+++    L+ +CG DL +   D    G
Sbjct:   73 RLDDERFARYVDRYW---TEADEDVSG------LISLDEFLVLYAKVFAPNNKYGAALRQAAARGHADVVRDLVARGCNPNTGDGRGWTAVHHACEFGQLEVLTTLQDVCGLDLDIDGDDNYGWG 188
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BLAST of mRNA_Ecto-sp8_S_contig1083.1221.1 vs. uniprot
Match: A0A7S2WF93_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WF93_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.770e-10
Identity = 55/166 (33.13%), Postives = 81/166 (48.80%), Query Frame = 1 
Query:   82 IISKHSGTVLEEGLPACEKAELSDDQYEAARAAFRAEAGGASRLGPQA--VKRALPRLDDALFQRLVEDRWHSYTDSDDAEHGPGGGGDSVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEELVRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALC 573
            +IS H+GTVL++  P     E S  + E A+A     +   S+LG     V++ L  +      RL  +   +Y      + G     D++ +  F  + G V AP   +G  LRKA+GRGDEE VR+L+ RGCNP    G G  +LH  A + R+     L  +C
Sbjct:   36 VISDHAGTVLDDRDP-----EPSLTRSEEAKATEIFHSLDRSKLGLNLAEVQKGLGNIG----VRLDPENLAAYVIPFFEQAGLRPEEDALSLQHFLELVGRVYAPGHKYGPRLRKASGRGDEERVRDLVFRGCNPRGTDGGGFNSLHYAAQYDRMGTIDLLLDIC 192
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BLAST of mRNA_Ecto-sp8_S_contig1083.1221.1 vs. uniprot
Match: F0Y1N9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1N9_AURAN)

HSP 1 Score: 65.5 bits (158), Expect = 6.910e-9
Identity = 53/172 (30.81%), Postives = 78/172 (45.35%), Query Frame = 1 
Query:   58 YERPEPKRIISKHSGTVLEEGLPACEKAELSDDQYEAARAAFRAEAGGASRLGPQAVKRALPRL----DDALFQRLVEDRWHSYTDSDDAEHGPGGGGDSVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEELVRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKAL 561
            Y  P+ +++IS   G      L   E  ELS ++ E A  AF  +     R+  + +K     +    +   +QRLVE   H    S DA        D  D+D +  ++  V APA  +G  LR+AAGRG+ + +R+   RGC+     G G TALH  A   + D    L
Sbjct:   22 YNAPKVEKVISDSPG------LEDDEHPELSPEELERATLAFHTKQDPGGRITREHLKGLFVEMRLKFEGDQYQRLVETP-HLGAVSFDAS-------DKCDLDAWLALFARVYAPATRYGARLRRAAGRGEVDRMRDYAARGCDARGSDGLGFTALHCAAQHDQGDALAVL 179
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BLAST of mRNA_Ecto-sp8_S_contig1083.1221.1 vs. uniprot
Match: A0A0P1AMI2_PLAHL (Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMI2_PLAHL)

HSP 1 Score: 63.5 bits (153), Expect = 2.960e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:  370 VYGSVAAPAITFGRHLRKAAGRGDEELVRELILRGCNPNTGSGTGETALHTMAAFGRVD 546
            V+  V APA  +G+ LR A GRG  E+V EL+ RGCNPN    +G +ALH    FG++D
Sbjct:  422 VFALVYAPAYKYGQKLRLACGRGQLEIVNELVSRGCNPNASDASGWSALHYTTDFGQLD 480
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1083.1221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FQJ8_ECTSI4.240e-13396.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA60_9PHAE1.540e-12692.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCP7_9STRA3.490e-2743.83Ankyrin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A7S1CKK1_9STRA3.130e-1839.20Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2WF93_9STRA2.770e-1033.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y1N9_AURAN6.910e-930.81Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A0P1AMI2_PLAHL2.960e-849.15Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1083contigEcto-sp8_S_contig1083:14819..17229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score73.6
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog4792.ETI34126
Model size624
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Ankyrin repeat
EggNOG OGs3Q8SG@4776,COG2940@1,KOG1082@2759
Cds size624
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143175.9334655-CDS-Ecto-sp8_S_contig1083:14818..149561681143175.9334655-CDS-Ecto-sp8_S_contig1083:14818..14956Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1083 14819..14956 +
1681143175.9426727-CDS-Ecto-sp8_S_contig1083:15409..155161681143175.9426727-CDS-Ecto-sp8_S_contig1083:15409..15516Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1083 15410..15516 +
1681143175.9509947-CDS-Ecto-sp8_S_contig1083:16189..163951681143175.9509947-CDS-Ecto-sp8_S_contig1083:16189..16395Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1083 16190..16395 +
1681143175.9602432-CDS-Ecto-sp8_S_contig1083:17056..172291681143175.9602432-CDS-Ecto-sp8_S_contig1083:17056..17229Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1083 17057..17229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1083.1221.1prot_Ecto-sp8_S_contig1083.1221.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1083 14819..17229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1083.1221.1

>prot_Ecto-sp8_S_contig1083.1221.1 ID=prot_Ecto-sp8_S_contig1083.1221.1|Name=mRNA_Ecto-sp8_S_contig1083.1221.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=208bp
MSRPSSRNAARPKTPVSRSYERPEPKRIISKHSGTVLEEGLPACEKAELS
DDQYEAARAAFRAEAGGASRLGPQAVKRALPRLDDALFQRLVEDRWHSYT
DSDDAEHGPGGGGDSVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEEL
VRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALCGKDLIMQPR
DKVRGGR*
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mRNA from alignment at Ecto-sp8_S_contig1083:14819..17229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1083.1221.1 ID=mRNA_Ecto-sp8_S_contig1083.1221.1|Name=mRNA_Ecto-sp8_S_contig1083.1221.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2411bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1083:14819..17229+ (Ectocarpus species8 EcLAC_412)
ATGTCTCGGCCTTCGTCGCGAAACGCAGCTCGCCCGAAGACTCCTGTAAG
CCGAAGCTACGAGCGCCCTGAGCCGAAACGGATAATCTCGAAGCATTCGG
GCACGGTGCTGGAGGAGGGCCTACCGGCCTGTGAGAAGGTACGAGAGAGA
CGAGCGCAATCAGCTCTGTTCTCGATGCTCTCTCTCTTGTGCAACAGAGT
GCTTAAGTAGGGCAATGGTGATGAGTATGGGCTCTTATTTTGACCTAAAA
ATGGACAGAAAGAGGATGCTCTCTTTCTTCCAGGCTGATGATGCAAAACA
ACACCTCCCCCCCTGCGGATGCTTTGAATTCCCAAGATTATGCAGACCAC
TCATCTTTCCAATCTCCACAAGATCAATCTGTCAACTACCGATTATTTGT
TCGGGTGTGGTTCCCTGTGCGTTGCAAAGAAGACTTGCTTTTAGCACTTC
CCACGGGAGGGTTTTGACAGCCGTGAGTTGCACTAGTAAGCACTGCTCGC
AGCAAGCAGCAGTCTACACGGCTCTTGGGGTTCTCTCTGGCCGAAATCTT
AGAGCGACCATTAATATTTGCGTGTTGGTGCGTGCACGCAGGCGGAGCTC
AGCGATGACCAATACGAAGCAGCCAGGGCGGCGTTCAGGGCCGAGGCAGG
AGGGGCGTCACGGCTCGGCCCGCAGGCGGTAAAGCGTGCTCTTCCTAGGT
GGGTGTATGGTGCCCGGAGAGATCAGACATCGAAAGTTGTCGCCTTGTGA
CGCACAAATAATTCCTTCGCGAACACATCTTCGTGTAGGGTATAGCAAGT
CTCACCGGCGTCTGTCGAGGGTGATTTCCCTCTTTTTACGAACCATGCTG
CTGAGTATGTCGTAGGCGTACACAGGCATGGACGCGATGCGATGTTCGGG
CCTCGGTTTGCTGCTGCTTCTCTTGTCCGAGGCAGAGAGGGGTGACGATG
GGTCTGTGGGTGACGAAGAGAATATATGAGATGTGCTCTCCTCGCGTGCA
TGCCTTTTGCCTTTGCCATGCGTGCGCACCTCCCGCCGGCTGATCCCTTT
TTCTGTCCCTTCCCTTTGGTCGAAGAAACGCGCTCTTCGTTCTTACCGGG
GGGGCGTGTTTCGACTTGTTGTTCTCGCTGTGCATCTGCACAAAAACAAG
AGTCCGCTCTCGCTCAAATACAAAATCATATTGTGCCTCCTCTGTCAGAA
AACCTTGTGTACTGCGCGCGCGATCAACGCCGAATGTCGCAGAAGTTTTG
TCGCTCATCAGCATCGGTTGCACCCGCATAAATTGCTTTCCCACAAAAAG
TGTCTCGCAGAAACCTCGTGGCATACTGTCCTCGGCGTTGTTATCTGTCC
CGCGTGAAGTCTCAATCTCAGGCTCGACGATGCCCTGTTCCAACGCCTCG
TGGAAGACCGATGGCACTCCTACACCGACTCCGACGACGCCGAACATGGG
CCGGGCGGCGGGGGGGATAGCGTCGACGTGGACGGTTTTGCGCGCGTCTA
CGGGAGTGTCGCGGCCCCGGCCATCACGTTCGGACGACACCTCCGGAAGG
CCGCGGGGCGAGGGGACGAGGAGCTCGGTGAGGAGCAAAGGAGAAGAACA
GAAAACACACATTTTTGTAATGATGTCAAGGGCCAAGGCGAGAATACCCA
ATATACTCCAGTAATTCCAACCCGGGTCCTTGTGAAGGTCGAACGCGGAT
GCACCAAGGCGGGGGGAGGCACTGCTGCCATGGTTGTTCGTTGCGGGCCA
CTACTGTTGTTCCATCATCCCTGTTTAGAAATATTACGCAGGTCGAGGGT
TGAGAGACGCGGTGGGGTCTTCCTGTGACGTGGTACAAGTAGTGCAATGT
GGTTGACCCGAGTTTCAAGAGTGTGTCTAGTAACAGTAGTCGATATGTGG
AAACTCCTCGACGCTCGCCCAAGCTCGTTCGACTCCTACACTCCCCCCGC
CCCCCCCACCCCTCCAGCGCCCTCCACCNNNNNNNNNNTTGTTGTGTGTT
AGTGGTATGTGTTGAGCGTGGTCGCCGGCCTGTCGCGCCTCCGCCGCCCC
CCGTTCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCTCCTCCCGTGTGCCA
AATGTCCGTTGCTATCTTCGTTGATTGCCTCTTTGACACAACGGTGGTCC
TAGGTGTGGTGTAATGTGATTCCCTCCCAACATGCACGCAACTTCTCCAC
CCGCCGCCGCCGCCGCCGCCTCCAAAAACCACGTGCAGTTCGAGAGCTGA
TTCTTCGCGGCTGCAATCCCAACACCGGATCGGGCACCGGAGAGACCGCC
CTCCACACCATGGCCGCCTTCGGACGCGTGGACTGCGCCAAGGCTCTCCG
GGCGCTCTGCGGGAAAGATCTCATCATGCAGCCAAGGGACAAGGTAAGAG
GAGGGAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1083:14819..17229+

>mRNA_Ecto-sp8_S_contig1083.1221.1 ID=mRNA_Ecto-sp8_S_contig1083.1221.1|Name=mRNA_Ecto-sp8_S_contig1083.1221.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1083:14819..17229+ (Ectocarpus species8 EcLAC_412)
ATGTCTCGGCCTTCGTCGCGAAACGCAGCTCGCCCGAAGACTCCTGTAAG
CCGAAGCTACGAGCGCCCTGAGCCGAAACGGATAATCTCGAAGCATTCGG
GCACGGTGCTGGAGGAGGGCCTACCGGCCTGTGAGAAGGCGGAGCTCAGC
GATGACCAATACGAAGCAGCCAGGGCGGCGTTCAGGGCCGAGGCAGGAGG
GGCGTCACGGCTCGGCCCGCAGGCGGTAAAGCGTGCTCTTCCTAGGCTCG
ACGATGCCCTGTTCCAACGCCTCGTGGAAGACCGATGGCACTCCTACACC
GACTCCGACGACGCCGAACATGGGCCGGGCGGCGGGGGGGATAGCGTCGA
CGTGGACGGTTTTGCGCGCGTCTACGGGAGTGTCGCGGCCCCGGCCATCA
CGTTCGGACGACACCTCCGGAAGGCCGCGGGGCGAGGGGACGAGGAGCTC
GTTCGAGAGCTGATTCTTCGCGGCTGCAATCCCAACACCGGATCGGGCAC
CGGAGAGACCGCCCTCCACACCATGGCCGCCTTCGGACGCGTGGACTGCG
CCAAGGCTCTCCGGGCGCTCTGCGGGAAAGATCTCATCATGCAGCCAAGG
GACAAGGTAAGAGGAGGGAGGTAA
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