mRNA_Ecto-sp8_S_contig1083.1220.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: D7FQJ9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ9_ECTSI) HSP 1 Score: 395 bits (1016), Expect = 3.610e-135 Identity = 197/203 (97.04%), Postives = 200/203 (98.52%), Query Frame = 1
Query: 1 MKTAFAALAMCGTTSAFVTPNAVKALAPSTRTSSSLSMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQNVSVLDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPFLA 609
MKTAFAALAMCGTTSAFVTPNAVKALAPSTR SSSLSMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQ+VSVLDAHN MV+KGPMWQLLFWIS AEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHG+PFLA
Sbjct: 1 MKTAFAALAMCGTTSAFVTPNAVKALAPSTRASSSLSMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQDVSVLDAHNVMVEKGPMWQLLFWISLAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGYPFLA 203
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: A0A835ZCB2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB2_9STRA) HSP 1 Score: 252 bits (643), Expect = 1.040e-78 Identity = 125/201 (62.19%), Postives = 157/201 (78.11%), Query Frame = 1
Query: 7 TAFAALAMCGTTSAFVTPNAVKALA-PSTRTSSSLSMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQNVSVLDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPFL 606
TA A A+ G+ +AF A ALA + R+SS+LSMEFAGGL GADGPEP +KNFDP G +E P+ +LF+REAE+KHGRIAMLA+ G++ P FVR+PG+IYQ VSV++AHNAMV+KGPM QLLFW+S EII P +M KDREPGDF+LDPL CK PEK ++Y+L+ELK+GRLAM+A SG +TQ + GHGFP+L
Sbjct: 6 TAIACAALVGSAAAFNGAFAGTALARTAVRSSSALSMEFAGGLLGADGPEPTTKNFDPLGLAEKNPDAVLFYREAELKHGRIAMLAVLGMVVPNFVRLPGDIYQGVSVVEAHNAMVEKGPMVQLLFWLSLFEIITAPLTWNMQAKDREPGDFSLDPLGFCKDPEKKKRYQLSELKNGRLAMLAFSGMITQAVLTGHGFPYL 206
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: A0A835Z019_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z019_9STRA) HSP 1 Score: 227 bits (579), Expect = 3.760e-69 Identity = 113/197 (57.36%), Postives = 147/197 (74.62%), Query Frame = 1
Query: 22 LAMCGTTSAFVTPN--AVKALAPSTRTSSSLSMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQNVSVLDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPFL 606
LA+ SAFV P+ A LA T S+LSMEFAGGL GADGPEP +KNFDP G +E ++LF+REAE+KH R+AMLA+ G++ P FVR+PG+I+Q V+V+DAHN MV+KGPM +LFW+S E++ P +M +KDREPGDF LDPL CK PEK ++Y+L+ELK+GRLAM+A SG +TQ + GH FP+L
Sbjct: 9 LALAAGASAFVAPSSFAGSQLARVTSAKSALSMEFAGGLIGADGPEPTTKNFDPLGLAEKG--DVLFYREAELKHCRLAMLAVVGMVVPNFVRLPGDIFQGVNVVDAHNLMVEKGPMVMVLFWVSLFELLTAPLTWNMAEKDREPGDFMLDPLGFCKDPEKKKRYQLSELKNGRLAMLAFSGMITQAVLTGHDFPYL 203
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: A0A7R9U7U0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U0_9STRA) HSP 1 Score: 226 bits (575), Expect = 1.190e-68 Identity = 109/169 (64.50%), Postives = 132/169 (78.11%), Query Frame = 1
Query: 100 SSLSMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQNVSVLDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPFL 606
S+L M+FAGGL G DGPEP SKNFDP G +E PE + +FREAEIKHGRI MLA G+I PEF R+PG+I+Q V+V+DAHN MV KGPM+ LLFWIS EII PT+ +D+ REPGDFA DPL+L K P+K ++Y LAELK+GRLAM+A SG +TQ A+ HGFPFL
Sbjct: 29 SALRMDFAGGLIGGDGPEPFSKNFDPLGLAEKSPELIPYFREAEIKHGRICMLATLGMIVPEFARLPGDIFQKVNVVDAHNEMVSKGPMYMLLFWISLWEIISLPTIKQLDE-GREPGDFAFDPLSLGKNPDKMKRYALAELKNGRLAMLAFSGMITQAALTNHGFPFL 196
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: A0A7S1XSJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSJ2_9STRA) HSP 1 Score: 211 bits (536), Expect = 7.330e-62 Identity = 106/202 (52.48%), Postives = 138/202 (68.32%), Query Frame = 1
Query: 1 MKTAFAALAMCGTTSAFVTPNAVKALAPSTRTSSSLSMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQNVSVLDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPFL 606
M A ALA+ + +AF P + L L+ EFAGGL G DGPEPNS+ FDP G ++ P + +FREAEIKHGRI MLA G+I PEF+R+PG+I+Q V + AH+AMV KGPM+ LL WI E++ FPT+ +D+ R PGDFA DPL+L K PEK ++Y LAELK+GRLAM+ SG +TQ A+ +GFP+L
Sbjct: 73 MMRAAMALALVASAAAFQAPQRARGL-------KQLNAEFAGGLLGGDGPEPNSRQFDPLGLADKNPNMIKYFREAEIKHGRICMLATLGMIVPEFMRLPGDIFQGVDAIGAHDAMVAKGPMYMLLIWIGVWELVSFPTIAALDE-GRMPGDFAFDPLSLGKNPEKLKRYSLAELKNGRLAMLGFSGMITQAALTHNGFPYL 266
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: A0A7S1U797_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U797_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.060e-56 Identity = 90/157 (57.32%), Postives = 117/157 (74.52%), Query Frame = 1
Query: 136 GADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQNVSVLDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPFL 606
G DGPEPNS+ FDP G ++ P + +FREAEIKHGRI MLA G+I PEF+R+PG+I+Q V + AH+AMV KGPM+ LL WI E++ FPT+ +D+ R PGDFA DPL+L K PEK ++Y LAELK+GRLAM+ SG +TQ A+ +GFP+L
Sbjct: 31 GGDGPEPNSRQFDPLGLADKNPNMIKYFREAEIKHGRICMLATLGMIVPEFMRLPGDIFQGVDAIGAHDAMVAKGPMYMLLIWIGVWELVSFPTIAALDE-GRMPGDFAFDPLSLGKNPEKLKRYSLAELKNGRLAMLGFSGMITQAALTHNGFPYL 186
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: A0A0G4H306_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H306_VITBC) HSP 1 Score: 189 bits (479), Expect = 3.470e-54 Identity = 89/156 (57.05%), Postives = 113/156 (72.44%), Query Frame = 1
Query: 136 GADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQNVSVLDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPF 603
G DGPEP S+NFDP G +E P+ L FFREAEIKHGRIAMLA+ G++ P F +PG + +SVL AH+ V+ G M QLLFW+S EI+ F TV+DMD+KDREPGDF++DP +TPE+ + ELK+GRLAM+A SG +TQ A+ G FPF
Sbjct: 54 GGDGPEPFSRNFDPLGLAEQFPQYLTFFREAEIKHGRIAMLAVLGMVVPSFWTLPGR--EGISVLAAHDKFVENGVMGQLLFWVSLWEIVTFKTVVDMDEKDREPGDFSMDPFGWTRTPERARVLRTQELKNGRLAMLAFSGMITQAALTGKNFPF 207
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: A0A6U3XI59_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3XI59_9STRA) HSP 1 Score: 178 bits (451), Expect = 3.800e-50 Identity = 105/209 (50.24%), Postives = 139/209 (66.51%), Query Frame = 1
Query: 1 MKTAFAALAMCGTTSAFVTPNAVKALAPSTRTSSSLSMEFAGGLRGADGPEP---NSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQNVSV---LDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKT-PEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPFL 606
MKTAFA LA+ + SAF A AP S+ LS EFA GL G +GPEP SKNFDP GFSE PE + +FREAE+KHGR AMLA G++ PEFVR+PG + +V LDAH+A++D M Q+L +ISFAE + + +M++ DR+PGD+ DP+ L T PEK + +L ELK+GRLAM+A+ G + ++ GHGFP+L
Sbjct: 1 MKTAFATLALAASASAF-------APAPVNTKSTQLS-EFANGLVGGEGPEPMFSGSKNFDPAGFSERAPEWMNWFREAELKHGRQAMLATVGIVVPEFVRIPGPQFSFEAVPNVLDAHDALIDSS-MKQILLFISFAEAMSMAALSNMNEYDRQPGDWGFDPIGLYPTDPEKRKAIQLKELKNGRLAMVAIGGMVAGASITGHGFPYL 200
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: A0A7R9WPE2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WPE2_9STRA) HSP 1 Score: 173 bits (438), Expect = 3.800e-48 Identity = 101/217 (46.54%), Postives = 132/217 (60.83%), Query Frame = 1
Query: 1 MKTAFAALAMCGTTSAFV----TPNAVKALAPSTRTSSSLSMEFAGGLRGADGPEP-------NSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQNVSV---LDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKT-EKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPFL 606
+KT A A+ GT SAF P AV +L EFA GL G +GPEP +S N+DP GF+E PE + +FREAE+KHGR AMLA G++ PEFVR+PGE + S+ +DAH+A+ D M Q+ WISF E FP + +M+ DR+PGD++ DPL E E+ KL ELK+GRLAM+A+ G +TQ M GHGFP+L
Sbjct: 2 VKTLMIAAALAGTASAFAPSQSAPKAVTSL-----------NEFANGLVGGEGPEPIPFSSQGSSVNWDPCGFTERAPEWVPWFREAELKHGRAAMLATVGIVVPEFVRIPGEQFSFESIPNIIDAHDALPDS--MIQIFAWISFIEACTFPALANMNNYDRQPGDYSFDPLGFFPEDEAAQERIKLVELKNGRLAMIAIGGMVTQATMTGHGFPYL 205
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Match: A0A6S8X7Z8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8X7Z8_9STRA) HSP 1 Score: 168 bits (426), Expect = 2.230e-46 Identity = 101/212 (47.64%), Postives = 139/212 (65.57%), Query Frame = 1
Query: 4 KTAFAALAMCGTTSAFVTPNAVKALAPSTRTSSSLSMEFAGGLRGADGPEP-------NSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGE--IYQNV-SVLDAHNAMVDKGPMWQLLFWISFAEIILFPTVIDMDKKDREPGDFALDPLNLCKT-PEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGFPFL 606
KTA LA ++A TP A S++TS +++ FA G+ G +GPEP SKNFDP GFSE PE L +FREAE+KHGR AMLA G + PEF+R+PGE ++N+ +V++AH+ + D M Q+ WIS AE + FP + + K DR PGD++ DPL L T PEK ++ +LAELK+GRLAM+A+ G +T A+ G+GFP+L
Sbjct: 3 KTAALILAALAGSAAAFTP------AKSSKTSVAVNA-FAEGMVGGEGPEPMPFTTAKTSKNFDPAGFSERAPEWLPWFREAELKHGRQAMLATVGFVVPEFIRIPGEQFSFENIPNVIEAHDKLPDS--MSQIFLWISLAEAMSFPALAGLGKYDRAPGDWSFDPLGLFPTDPEKQKEMQLAELKNGRLAMIAIGGMVTGAAITGNGFPYL 205 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1083.1220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1083.1220.1 >prot_Ecto-sp8_S_contig1083.1220.1 ID=prot_Ecto-sp8_S_contig1083.1220.1|Name=mRNA_Ecto-sp8_S_contig1083.1220.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=204bp MKTAFAALAMCGTTSAFVTPNAVKALAPSTRTSSSLSMEFAGGLRGADGPback to top mRNA from alignment at Ecto-sp8_S_contig1083:9883..13757+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig1083.1220.1 ID=mRNA_Ecto-sp8_S_contig1083.1220.1|Name=mRNA_Ecto-sp8_S_contig1083.1220.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3875bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1083:9883..13757+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1083:9883..13757+ >mRNA_Ecto-sp8_S_contig1083.1220.1 ID=mRNA_Ecto-sp8_S_contig1083.1220.1|Name=mRNA_Ecto-sp8_S_contig1083.1220.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1083:9883..13757+ (Ectocarpus species8 EcLAC_412)back to top |