mRNA_Ecto-sp8_S_contig1083.1218.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1083.1218.1
Unique NamemRNA_Ecto-sp8_S_contig1083.1218.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: D7FQK0_ECTSI (Putative subunit of the Anaphase Promoting Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK0_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 8.210e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 270
            LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL
Sbjct:  494 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 583
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: A0A7S2ID73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ID73_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.150e-14
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 270
            LV +YL A K+++A   AKEA    P D R V L G           + + +AKRA  KAL +DP  L   LALV LHM +++YDTC++L
Sbjct:   12 LVESYLAAEKYKEAICTAKEAISSAPRDPRAVTLVGLALAQAPSSPREGKERAKRALRKALALDPGALRPLLALVDLHMNEEDYDTCVEL 101
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: A0A7S2EWA9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EWA9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.080e-14
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 270
            LV +YL A K+++A   AKEA    P D R V L G           + + +AKRA  KAL +DP  L   LALV LHM +++YDTC+DL
Sbjct:  470 LVESYLAAEKYKEAICTAKEAISSAPRDPRAVTLVGLALAQAPSSPREGKERAKRALRKALALDPTALRPLLALVDLHMNEEDYDTCVDL 559
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: W7TGI5_9STRA (Anaphase-promoting complex subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGI5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.490e-12
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 270
            LV+AYL   KF++A   AKEA   MP  A  + L G V   +  G    R KAKRA+++AL ++P  +DA LAL  LH+  +EYD CI L
Sbjct:  463 LVDAYLVQHKFKEALGCAKEAFSAMPKSATAITLVGRVLAQLPEG----REKAKRAFQRALSMNPSTVDALLALADLHLGAQEYDKCIHL 548
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: A0A7S2WJE0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJE0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.210e-11
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 270
            LV AYL A KF++A   A+EA   +PG+A  V L G V         D   +A++ + +AL +DP  ++AT+ LV LH+ ++E+D C++L
Sbjct:  394 LVEAYLDASKFKEASVTAREAISNLPGNATAVALLGRVLATASTQHPDKD-RARKLFAQALELDPRCVEATIGLVDLHLRNREFDQCVEL 482
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: UPI00053C2976 (anaphase-promoting complex subunit 7 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C2976)

HSP 1 Score: 63.5 bits (153), Expect = 9.460e-10
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 270
            LV++YL  GK ++A +AA+EA   MP  A+ + L G V     GG    R KAK+ YE ALR++P +L A LAL  LH+ +      + L
Sbjct:  386 LVHSYLAFGKTKEALYAAREAMNGMPQSAKALKLVGDVHASTSGG----REKAKKFYESALRLEPGYLGAALALAELHLIEGRNGDAVSL 471
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: A0A835CGE5_9FABA (Anaphase-promoting complex subunit 7 n=2 Tax=Caesalpinioideae TaxID=3804 RepID=A0A835CGE5_9FABA)

HSP 1 Score: 63.2 bits (152), Expect = 1.290e-9
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 270
            LV+ YL   K ++A +AA+EA + MP  A+ + L G V     GG    R KAK+ YE ALR++P +L A LAL  LH+ +      + L
Sbjct:  388 LVHTYLALSKIKEALYAAREAMKAMPQSAKALKLVGDVHASNSGG----REKAKKFYESALRLEPGYLGAALALAELHVTEGRNGDAVSL 473
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: S8DV35_9LAMI (Uncharacterized protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DV35_9LAMI)

HSP 1 Score: 63.2 bits (152), Expect = 1.290e-9
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 270
            LV +YL   K ++A  A++EA +VMP  A+ + L G V     GG    R KAK+ YE ALR++P FL A LAL  LH+ ++     + L
Sbjct:  393 LVRSYLALSKVKEALHASREAMKVMPHSAKALKLVGDVHASSAGG----REKAKKFYESALRLEPGFLAAALALADLHVAEERSGDAVAL 478
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: A0A6L2M0G6_TANCI (Cytochrome P450 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2M0G6_TANCI)

HSP 1 Score: 63.2 bits (152), Expect = 1.300e-9
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLH-MEDKEYD 255
            LV +YL   K ++A +AA+EA + MP  A+ + L G V+     G    R KAK+ YE ALR++P +L A LAL  LH ME + Y+
Sbjct:  462 LVRSYLALSKTKEALYAAREAMKAMPQSAKALKLVGDVYASNSSG----RDKAKKFYESALRLEPGYLGAALALAELHVMEGRNYE 543
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BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Match: UPI0012F48969 (anaphase-promoting complex subunit 7 isoform X3 n=1 Tax=Cucumis sativus TaxID=3659 RepID=UPI0012F48969)

HSP 1 Score: 62.8 bits (151), Expect = 1.750e-9
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNRLKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL 270
            LV++YL   K ++A +AA+EA + MP  A+ + L G V     GG    R KAK+ YE ALR++P +L A LAL  LH+ +      + L
Sbjct:  321 LVHSYLALSKMKEALYAAREAMKAMPHSAKALKLVGDVHASNSGG----REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL 406
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1083.1218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQK0_ECTSI8.210e-53100.00Putative subunit of the Anaphase Promoting Complex... [more]
A0A7S2ID73_9STRA3.150e-1443.33Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2EWA9_9STRA6.080e-1444.44Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
W7TGI5_9STRA3.490e-1245.56Anaphase-promoting complex subunit n=3 Tax=Monodop... [more]
A0A7S2WJE0_9STRA1.210e-1138.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI00053C29769.460e-1041.11anaphase-promoting complex subunit 7 n=1 Tax=Taren... [more]
A0A835CGE5_9FABA1.290e-940.00Anaphase-promoting complex subunit 7 n=2 Tax=Caesa... [more]
S8DV35_9LAMI1.290e-941.11Uncharacterized protein n=1 Tax=Genlisea aurea Tax... [more]
A0A6L2M0G6_TANCI1.300e-943.02Cytochrome P450 n=1 Tax=Tanacetum cinerariifolium ... [more]
UPI0012F489691.750e-940.00anaphase-promoting complex subunit 7 isoform X3 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1083contigEcto-sp8_S_contig1083:909..1474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score183.7
Seed ortholog evalue3.8e-44
Seed eggNOG ortholog2880.D7FQK0
Preferred nameANAPC7
Model size275
KEGG koko:K03354
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0061630,GO:0061659,GO:0062033,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0090068,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
Exons2
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG1174@1,KOG1174@2759
Cds size273
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143175.7151544-CDS-Ecto-sp8_S_contig1083:908..10251681143175.7151544-CDS-Ecto-sp8_S_contig1083:908..1025Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1083 909..1025 -
1681143175.7241328-CDS-Ecto-sp8_S_contig1083:1318..14741681143175.7241328-CDS-Ecto-sp8_S_contig1083:1318..1474Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1083 1319..1474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1083.1218.1prot_Ecto-sp8_S_contig1083.1218.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1083 909..1474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1083.1218.1

>prot_Ecto-sp8_S_contig1083.1218.1 ID=prot_Ecto-sp8_S_contig1083.1218.1|Name=mRNA_Ecto-sp8_S_contig1083.1218.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=91bp
LVNAYLQAGKFRKAGFAAKEANEVMPGDARTVLLTGSVWEHIKGGMTDNR
LKAKRAYEKALRIDPVFLDATLALVGLHMEDKEYDTCIDL*
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mRNA from alignment at Ecto-sp8_S_contig1083:909..1474-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1083.1218.1 ID=mRNA_Ecto-sp8_S_contig1083.1218.1|Name=mRNA_Ecto-sp8_S_contig1083.1218.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=566bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1083:909..1474- (Ectocarpus species8 EcLAC_412)
CTGGTGAACGCCTACCTCCAGGCGGGCAAGTTCCGCAAGGCGGGTTTCGC
GGCGAAGGAGGCCAACGAGGTCATGCCAGGGGACGCCAGAACGGTCCTCC
TGACGGGGAGCGTGTGGGAGCACATTAAGGGAGGCATGACGGACAATCGA
CTCAAGGTAGCTGCCACGAGACACAGACCTTTGTTGTTGTTTTTGGCGGC
GGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCTGT
GGTCTTTCCTTCCGTGGGTGATGTCTCATATTCTCTTCGACTAACATGAG
AAATTTTTGATGATAGAAATGGGCATCAATGTTAAAAAAAAAAGTTGGCT
CAACCCCTCTTTGCGCGTATCTGGTGCATTTTTTTGCGGGCTCTCCGATA
TCTCCCACTCGTCGACGCAACTTCCTTCCTTCCTTCCTTCCTTCCTCAGG
CGAAGAGGGCCTACGAGAAGGCCCTAAGGATAGACCCGGTCTTCCTCGAC
GCTACCCTTGCCCTCGTGGGGTTGCACATGGAGGACAAGGAGTACGACAC
CTGCATAGACCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1083:909..1474-

>mRNA_Ecto-sp8_S_contig1083.1218.1 ID=mRNA_Ecto-sp8_S_contig1083.1218.1|Name=mRNA_Ecto-sp8_S_contig1083.1218.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1083:909..1474- (Ectocarpus species8 EcLAC_412)
CTGGTGAACGCCTACCTCCAGGCGGGCAAGTTCCGCAAGGCGGGTTTCGC
GGCGAAGGAGGCCAACGAGGTCATGCCAGGGGACGCCAGAACGGTCCTCC
TGACGGGGAGCGTGTGGGAGCACATTAAGGGAGGCATGACGGACAATCGA
CTCAAGGCGAAGAGGGCCTACGAGAAGGCCCTAAGGATAGACCCGGTCTT
CCTCGACGCTACCCTTGCCCTCGTGGGGTTGCACATGGAGGACAAGGAGT
ACGACACCTGCATAGACCTGTGA
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