mRNA_Ecto-sp8_S_contig10829.1217.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: D7FXF7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF7_ECTSI) HSP 1 Score: 402 bits (1033), Expect = 4.220e-132 Identity = 245/279 (87.81%), Postives = 248/279 (88.89%), Query Frame = 1
Query: 1 QSPESKEAFSAVFHQLRNPSQQPATXXXXXXXXXXXXXXXXXXXXQPLQLQPHHQGNDGRSPAEGRSSACAEAHHCDSGGT--TRDEANVGFLREI-------------------MPQVSDRGLRYVLHRVAKGSRVTAASYLADRFAVGSSSASLKGLEADAEAFERKEQGDARKAREASDRAEEARRRDKEERDALKGKIVGRYADEVKAEGGATKVATKKVDLPGLTEKKKTTRYRDGKVVTTTGAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
+SPESKEAFSAVFHQLRNPSQQPATXXXXXXXXXXXXXXXXX QPLQLQPHHQGNDGRSPAEGRSSA AE HCDSGGT RDEA+VGFLRE+ MPQVSDRGLRYVLHRVAKGSRV AASYLADRFAVGSSSASLKGLEADAEAFERKEQGDARKAREASDRAEEARRRDKEERDALKGKIVGRYADEVKAEGGATK ATKKVDLPGLTEKKKTTRYRDGKVVTTTGAKVIVE VKPEWDGGSRGKVKTKGKRGKGFV
Sbjct: 40 ESPESKEAFSAVFHQLRNPSQQPATXXXXXXXXXXXXXXXXXRQQQPLQLQPHHQGNDGRSPAEGRSSAGAEGRHCDSGGTGTARDEADVGFLREMPPPSNPTTGAPPPAPPRLRMPQVSDRGLRYVLHRVAKGSRVAAASYLADRFAVGSSSASLKGLEADAEAFERKEQGDARKAREASDRAEEARRRDKEERDALKGKIVGRYADEVKAEGGATKAATKKVDLPGLTEKKKTTRYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 318
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: A0A8J4FDD9_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FDD9_9CHLO) HSP 1 Score: 67.4 bits (163), Expect = 4.820e-10 Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 619 GLTEKKKTTRYRDGKVVTTTGAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
G ++ T RY DG+VVTT G K I+E EWDGGSRGKV TKGKRGKGFV
Sbjct: 53 GKQTQQSTVRYLDGRVVTTKGEKFIIEKTGEEWDGGSRGKVYTKGKRGKGFV 104
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: A0A5J4Y6Z0_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6Z0_9CHLO) HSP 1 Score: 71.2 bits (173), Expect = 6.580e-10 Identity = 67/190 (35.26%), Postives = 87/190 (45.79%), Query Frame = 1
Query: 205 ACAEAHHCDSGGTTRDEANVGFLREIMPQVSDRGLRYVLHRVAKGSRVTAASYLADRFAVGSSSASLKGLEADAEAFERKEQGDARKAREASDRAEEARRRDKEERDALKGKIVGRYADEVKAEGGATKVATKKVDLPGLTEKKKTTRYRDGKVVTTTGAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
A A H+ T + G L ++ P+ S L +VLH V AA +L D+ + S AS A + ++Q D A EA R++KE R L K ++A G T T+ KK RYR+G+VVT G K I E EWDGGS+GKV TKGKRGKG V
Sbjct: 103 APAALHNLQQSTETAESQQAGPLIDLYPENSPAYLNHVLHDVCHNQLEDAAHWLMDQGNLAQSEASWH-------ACQEQKQRD----------AAEAVRKEKEHRKQLLAKY------HLQAVG--TSAPTEPKHACQAPNKKNQVRYREGQVVTAKGEKYITEKSGQEWDGGSKGKVVTKGKRGKGIV 267
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: A0A8J5XQD0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQD0_DIALT) HSP 1 Score: 72.0 bits (175), Expect = 6.660e-10 Identity = 68/177 (38.42%), Postives = 88/177 (49.72%), Query Frame = 1
Query: 250 DEANVGFLREIMPQVSDRGLRYVLHRVAKGSRVTAASYLADRFAVGSSSASLKGLEADAEAFERKEQGDARKAREASDRAEEARRRDKEERDALKGKIVGRYADEVKAEGGATKVATKKVDLPGLTEKKKT-TRYRDGKVVTTT-GAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
D + LRE+ P V +VL +G + AA YL + L+A A ER+ +AR A+ + ARRR++E + +L VGRY E A GGA G +E+ RYRDG V + G K +VE +PEWDGGSRG VKTKGKRGKGF
Sbjct: 162 DATVLALLREMCPHVPLDVTEHVLRARCRGDKHEAAEYLLQM--------GVDELDALATQLERE------RAR-AAQADDAARRRERESKRSL----VGRY--EHVAVGGAAPPREPHGSARGKSERPAAEVRYRDGAVASVAKGQKFVVEDTRPEWDGGSRGTVKTKGKRGKGFA 317
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: A0A4D9D606_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D606_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 9.710e-9 Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 529 LKGKIVGRYADEVKAEGGATKVATKK----VDLPGLTEKKKTT-RYRDGKVVTTTGAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
+K IV R+AD+V GG+ + LP L + ++ R+R+G VV + G K +VE + P+WDGGSRGKVKTKGKRG GFV
Sbjct: 273 VKQAIVDRFADQVTIHGGSXXXXXXXXRPPMPLPTLPKNVESKLRFREGVVVASKGEKYVVEKLTPDWDGGSRGKVKTKGKRGPGFV 359
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: A0A8J4FC95_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FC95_9CHLO) HSP 1 Score: 67.4 bits (163), Expect = 1.790e-8 Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 619 GLTEKKKTTRYRDGKVVTTTGAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
G ++ T RY DG+VVTT G K I+E EWDGGSRGKV TKGKRGKGFV
Sbjct: 244 GKQTQQSTVRYLDGRVVTTKGEKFIIEKTGEEWDGGSRGKVYTKGKRGKGFV 295
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: A0A8J4EUR7_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EUR7_9CHLO) HSP 1 Score: 66.6 bits (161), Expect = 3.410e-8 Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 619 GLTEKKKTTRYRDGKVVTTTGAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
G ++ T RY DG+VVTT G K I+E +WDGGSRGKV TKGKRGKGFV
Sbjct: 250 GKQAQQSTVRYLDGRVVTTKGEKFIIEKTAEDWDGGSRGKVYTKGKRGKGFV 301
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: A0A7S0EUL0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EUL0_9EUKA) HSP 1 Score: 64.7 bits (156), Expect = 3.480e-8 Identity = 63/178 (35.39%), Postives = 89/178 (50.00%), Query Frame = 1
Query: 250 DEANVGFLREIMPQVSDRGLRYVLHRVAKGSRVTAASYLADRFAVGSSSASLKGLEADAEAFERKEQGDARKAREASDRAEEARRRDKEERDALKGKIVGRYADEVKAEGGATKVATKKVDLPGLTE---KKKTTRYRDGKVVTTTGAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
D A + LRE++P+ S R VL R + GS AA L V L+ AD E AR A+D E ++ +A + ++V RY+ E +EG K+ ++ G + K ++ RYR+G+V +T G K IVE K +WDGGS+GKV KGKRG GF
Sbjct: 44 DGAAIAALRELVPEASPSVCRLVLQR-SGGSLDEAAEILFSTDVV-----ELEAAAADEE------------ARSAADEEHE-----RKTGNAARRRLVNRYSVEAVSEG-PLKLQPPRLPYSGSRKDALKGESIRYREGQVSSTKGGKFIVEE-KEDWDGGSKGKVNNKGKRGPGFA 196
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: A0A150GC07_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GC07_GONPE) HSP 1 Score: 62.8 bits (151), Expect = 8.860e-8 Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 646 RYRDGKVVTTTGAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
RY DG+VV+T G K I+E +WDGGSRGKV TKGKRGKGFV
Sbjct: 124 RYLDGRVVSTKGEKFIIEKTGEDWDGGSRGKVFTKGKRGKGFV 166
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Match: D8TN50_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TN50_VOLCA) HSP 1 Score: 64.7 bits (156), Expect = 1.290e-7 Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 646 RYRDGKVVTTTGAKVIVEAVKPEWDGGSRGKVKTKGKRGKGFV 774
RY DG+VV+T G K I+E EWDGGSRGKV TKGKRGKGF+
Sbjct: 246 RYLDGRVVSTKGEKFIIEKTSEEWDGGSRGKVYTKGKRGKGFI 288 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10829.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10829.1217.1 >prot_Ecto-sp8_S_contig10829.1217.1 ID=prot_Ecto-sp8_S_contig10829.1217.1|Name=mRNA_Ecto-sp8_S_contig10829.1217.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=165bp MPQVSDRGLRYVLHRVAKGSRVTAASYLADRFAVGSSSASLKGLEADAEAback to top mRNA from alignment at Ecto-sp8_S_contig10829:790..5462+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10829.1217.1 ID=mRNA_Ecto-sp8_S_contig10829.1217.1|Name=mRNA_Ecto-sp8_S_contig10829.1217.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4673bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10829:790..5462+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10829:790..5462+ >mRNA_Ecto-sp8_S_contig10829.1217.1 ID=mRNA_Ecto-sp8_S_contig10829.1217.1|Name=mRNA_Ecto-sp8_S_contig10829.1217.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10829:790..5462+ (Ectocarpus species8 EcLAC_412)back to top |