mRNA_Ecto-sp8_S_contig10825.1214.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10825.1214.1
Unique NamemRNA_Ecto-sp8_S_contig10825.1214.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: D8LL71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL71_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 3.350e-60
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1
Query:    7 MDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG 315
            MDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLG DESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG
Sbjct:    1 MDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGADESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG 103          
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: A0A6H5L356_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L356_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 6.370e-59
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1
Query:    1 GDMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG 315
            GDMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLG DESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG
Sbjct:  269 GDMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGADESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG 373          
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: A0A835YWX0_9STRA (p25-alpha-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.920e-17
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    4 DMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG 315
            ++DSA+FFKL  D+ L      RT CDL+FT+  +     K++ + AFR  AI  +A    V E +V++ IASV  VSS+GTV  A RFHDDK+TYTG+H  GG
Sbjct:   29 ELDSARFFKLCTDARLIDARFGRTQCDLVFTRAATQ----KRLGWAAFRAQAIPYVADGKNVSEESVLAAIASVQCVSSTGTVPDAVRFHDDKTTYTGTHGVGG 128          
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: Q244Y1_TETTS (Tubulin polymerization-promoting family protein n=2 Tax=Tetrahymena thermophila TaxID=5911 RepID=Q244Y1_TETTS)

HSP 1 Score: 71.6 bits (174), Expect = 1.310e-13
Identity = 47/104 (45.19%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    4 DMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG 315
            DMD   F K   D GL  K LT TD DLIF K  +SS  V+ I +  F K  +  +A K G+   A+  K+ S  G + +GT A A +FHDDKS YTG +A GG
Sbjct:   18 DMDGKTFAKFAKDCGLLDKKLTATDIDLIFAKVKTSSA-VRTITFAQFEK-GLDQMATKKGISLDALKEKVTSAGGPTFTGTKADAVKFHDDKSLYTGVYANGG 119          
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: Q244Y3_TETTS (Tubulin polymerization-promoting family protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q244Y3_TETTS)

HSP 1 Score: 69.7 bits (169), Expect = 7.340e-13
Identity = 47/104 (45.19%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    4 DMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG 315
            +MD   F K   D+GL  K LT TD DLIF K   SS  ++ I+   F +  I   AAK G+    +  K+ +  G S SGT A A RFHDDKS YTG +A GG
Sbjct:   18 EMDGKTFAKFAKDTGLLDKKLTATDVDLIFAKVKGSSA-IRCINIRQFEE-GINQFAAKKGISAQDLREKVTASNGPSYSGTKADAVRFHDDKSLYTGVYANGG 119          
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: A0A699YJU1_HAELA (Flagellar associated protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YJU1_HAELA)

HSP 1 Score: 68.9 bits (167), Expect = 1.730e-12
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    4 DMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVTGVSS--SGTVAQASRFHDDKSTYTGSHAAGG 315
            +M+S  F+KL  D+G+  K LT+TDCDLIFTK  +     +KI+Y  F+  A+ ++A K    + +V    A++ G  +  + T AQA++FHDDKS YTG +A GG
Sbjct:   24 EMESKNFYKLFKDAGMIDKVLTQTDCDLIFTKVKTKGA--RKINYSEFQT-ALEHIAGK---KKCSVDDVTATICGAEAKINATTAQATKFHDDKSLYTGVYANGG 123          
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: A0A383WLB3_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WLB3_TETOB)

HSP 1 Score: 68.2 bits (165), Expect = 5.000e-12
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    4 DMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG 315
            +++   F KL  D+ L GK+LT TD DLIF K  +   C  KI +  F K  + ++AAK G     V++ I    G   +GT A+A RFHDDKS YTG +A GG
Sbjct:   30 ELEGKNFIKLAKDTKLLGKALTTTDIDLIFAKVKAKGAC--KITWPEFVK-GLDHIAAKKGCAVDEVVATIIKSGGPQDNGTKAEACRFHDDKSQYTGVYARGG 130          
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: A0A2P6VCP5_9CHLO (Flagellar associated n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VCP5_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 5.860e-12
Identity = 43/103 (41.75%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    4 DMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVTGVSSSG-TVAQASRFHDDKSTYTGSHAA 309
            ++D A+F KL  ++GL GK+L+ TDCD++F K    S   +KI ++ F    +  LA+K G D  A+++++ +  G  ++G T A+A RFHDD S+YTG HAA
Sbjct:  120 ELDGARFIKLCKETGLVGKALSTTDCDIMFAKCKERSA--RKITFEQFVD-CVGLLASKTGGDLDALIARLGAAGGPCANGVTAAEAVRFHDDVSSYTGVHAA 219          
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: H9B967_EIMTE (p25-alpha domain-containing protein, putative n=2 Tax=Eimeria TaxID=5800 RepID=H9B967_EIMTE)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-11
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    4 DMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHAAGG 315
            D+DS  F KL  D  L G  LT+TDCDLIFTK C + G  + + +  F   A+  +AAK       ++ ++    G    GT A+A RF+DDKST+TG HA GG
Sbjct:   16 DLDSRTFVKLCKDCKLLGGGLTQTDCDLIFTK-CKAKGAAR-LTFSEFEA-AMEAVAAKKKCSLEELLQQVGPGGGPQFRGTAAEAVRFYDDKSTFTGVHAHGG 116          
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Match: A0A077TVG4_PLACH (p25-alpha family protein, putative n=12 Tax=Plasmodium (Vinckeia) TaxID=418101 RepID=A0A077TVG4_PLACH)

HSP 1 Score: 66.6 bits (161), Expect = 1.220e-11
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 1
Query:    4 DMDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKFAIANLAAKLGVDESAVMSKIASVT--GVSSSGTVAQASRFHDDKSTYTGSHAAGG 315
            DMDS  F K++ DS L  K +T  D DL F K  +     K+I YD F + AI +L  K  +D    + K+ +    G    GT A+A+RFHDDKSTYTG H  GG
Sbjct:   14 DMDSRTFVKILKDSKLLSKKITAVDADLAFAKVKTKGS--KRIKYDQFVE-AIKHLTEKYKLDYDQFVGKLCNEASNGPILYGTKAEATRFHDDKSTYTGVHKLGG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10825.1214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL71_ECTSI3.350e-6099.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L356_9PHAE6.370e-5999.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YWX0_9STRA1.920e-1748.08p25-alpha-domain-containing protein n=1 Tax=Tribon... [more]
Q244Y1_TETTS1.310e-1345.19Tubulin polymerization-promoting family protein n=... [more]
Q244Y3_TETTS7.340e-1345.19Tubulin polymerization-promoting family protein n=... [more]
A0A699YJU1_HAELA1.730e-1242.45Flagellar associated protein (Fragment) n=1 Tax=Ha... [more]
A0A383WLB3_TETOB5.000e-1243.27Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A2P6VCP5_9CHLO5.860e-1241.75Flagellar associated n=1 Tax=Micractinium conductr... [more]
H9B967_EIMTE1.080e-1143.27p25-alpha domain-containing protein, putative n=2 ... [more]
A0A077TVG4_PLACH1.220e-1143.40p25-alpha family protein, putative n=12 Tax=Plasmo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10825contigEcto-sp8_S_contig10825:628..1822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score196.8
Seed ortholog evalue4.9e-48
Seed eggNOG ortholog2880.D8LL71
Model size315
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.p25-alpha
EggNOG OGs2CZ8P@1,2S930@2759
Cds size309
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143175.431342-CDS-Ecto-sp8_S_contig10825:627..7891681143175.431342-CDS-Ecto-sp8_S_contig10825:627..789Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10825 628..789 -
1681143175.439934-CDS-Ecto-sp8_S_contig10825:1669..18161681143175.439934-CDS-Ecto-sp8_S_contig10825:1669..1816Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10825 1670..1816 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143175.4472423-UTR-Ecto-sp8_S_contig10825:1816..18221681143175.4472423-UTR-Ecto-sp8_S_contig10825:1816..1822Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10825 1817..1822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10825.1214.1prot_Ecto-sp8_S_contig10825.1214.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10825 628..1816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10825.1214.1

>prot_Ecto-sp8_S_contig10825.1214.1 ID=prot_Ecto-sp8_S_contig10825.1214.1|Name=mRNA_Ecto-sp8_S_contig10825.1214.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=103bp
MDSAKFFKLMGDSGLTGKSLTRTDCDLIFTKTCSSSGCVKKIHYDAFRKF
AIANLAAKLGVDESAVMSKIASVTGVSSSGTVAQASRFHDDKSTYTGSHA
AGG
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mRNA from alignment at Ecto-sp8_S_contig10825:628..1822-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10825.1214.1 ID=mRNA_Ecto-sp8_S_contig10825.1214.1|Name=mRNA_Ecto-sp8_S_contig10825.1214.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1195bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10825:628..1822- (Ectocarpus species8 EcLAC_412)
GGAGACATGGACAGCGCCAAGTTCTTCAAGCTCATGGGCGACAGCGGCCT GACCGGAAAGAGCCTGACCCGCACGGACTGCGACCTCATCTTCACCAAGA CCTGCTCCAGCTCGGGCTGCGTCAAGAAGATCCACTACGATGCCTTCCGC AAGGTACGAAAGGAAACGGATTTTCGCTTTCCGCCGAGGCATTAATAAGG CTCTCTGACAGTTTCACCCGAGTTTTTTGTTTTTTGTTTTTTTGTTTGCA GAGCAAAGCTGCGAGGGATTTTGTGGGGGGTCAGGGTCGCCGGGGTAGTC TAGAGTCTAGGGGTTGAAGCATTTGTATGGATGTTACGTCCAAAACGACA ACGACAGCAAACCGACGAAAGCTCGCCGCGACGACGTGCCGTCGAAAGAC TTTGTGCGCGACACCCGAGCAGGAGCGCAGCAGTAGCTTGTGTCCCCACA ACAGCTCTGAATCACTCGTCTGGGCTTTGCGTGGTGGGAGAGAAAGACGA ACTAAGGGCTGCTGGTAGGACAATCAAAATGCGCGATCACGACAACCAAT GATAGAGTTTTAGATAATCGGCCGGCGGGAGGTGAGGCCGGCGTGCGGCC AGATTGTGATGTACGCTTTCCTGAGGCGAGGCAGTCAAGTCCCGGTCGTG CCAAGCACGAAAACCTCGCGGCGGACAAGCGACATACCTGAACTCGGACC CGTCCTGTGGTGCGGTTTGTAGACCCCCCCCCCCCCACACACACACACAC AATCATGAGTACGCCCCCCCCCCCGATACAAATGTAAGGATTATTTGTAA GGTCTGGTGCACCCTTGTGAAACGTAGCCTGGGCCGACGAAAACCCGGCG TTTCGCTCCGTCCCGGTGTTGTATGGAATGGTGGGAGGTCAACGGCCTAC CGACTACGGCATGCGATTTACATGAGCATTCCCCCGGATAGCGTGCGCAC AAACAGAGACACCTCCCACACGGGCACGTCCACCACCGCATGCATGCGTA TGCTTGGGTGCTCTGCTATGCTACTACATACAGTTCGCGATAGCCAACCT GGCGGCGAAGCTCGGGGTTGACGAGAGCGCCGTCATGTCCAAGATCGCCT CGGTCACCGGGGTGAGCTCCTCCGGAACGGTGGCGCAGGCCTCGCGCTTC CACGACGACAAAAGCACCTACACGGGATCGCACGCCGCCGGAGGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10825:628..1822-

>mRNA_Ecto-sp8_S_contig10825.1214.1 ID=mRNA_Ecto-sp8_S_contig10825.1214.1|Name=mRNA_Ecto-sp8_S_contig10825.1214.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10825:628..1822- (Ectocarpus species8 EcLAC_412)
ATGGACAGCGCCAAGTTCTTCAAGCTCATGGGCGACAGCGGCCTGACCGG
AAAGAGCCTGACCCGCACGGACTGCGACCTCATCTTCACCAAGACCTGCT
CCAGCTCGGGCTGCGTCAAGAAGATCCACTACGATGCCTTCCGCAAGTTC
GCGATAGCCAACCTGGCGGCGAAGCTCGGGGTTGACGAGAGCGCCGTCAT
GTCCAAGATCGCCTCGGTCACCGGGGTGAGCTCCTCCGGAACGGTGGCGC
AGGCCTCGCGCTTCCACGACGACAAAAGCACCTACACGGGATCGCACGCC
GCCGGAGGT
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