mRNA_Ecto-sp8_S_contig10823.1212.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10823.1212.1
Unique NamemRNA_Ecto-sp8_S_contig10823.1212.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10823.1212.1 vs. uniprot
Match: D7FZS2_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS2_ECTSI)

HSP 1 Score: 620 bits (1598), Expect = 5.460e-220
Identity = 322/349 (92.26%), Postives = 329/349 (94.27%), Query Frame = 1 
Query:  124 VAAVLAKDYSVLKEGEGATKGASAALPPAPWHIEIFAQARHSSSSVRLDTARQRKRHGVSVAREGVYARYANIYKDHAARTYARTIEASRQERGGLEAYRRRVVKASTDAERYRGYVEMDTPRDDPYWEEDGLGLLPADDGSTSTNCAASSNGRESGNVAGFFPARSSANVDVSLSSEKEDGAGKGLVHGDETARGWPVDGAAPECSVGDGGESEAPAVSRLDSVTDDENTATTRKSFSDGGGGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRADRAVGAPSSASSVGSSISSADAFSAAGSGQTLEAYRKANLRNPATHRPRSRTLNWKDGKEWRMN 1170
            VAAVLAKDYSVLKEGEGATKGASAALPPAPWHIEIFAQ       VRLDTARQRK HGVSVAREGVYARYANIYKDHAARTYARTIEASRQERGGLEAYRRRVVKASTDAERYRGYVEMDTPRDDP+WEEDGLGLLPAD GSTSTN AASSNGRESG+VAGF P+RSSANVDVSLSSEKEDGAG+GLVHGDETAR WPVD AAPECS+GDGGE EAPAVSRLDSVTDDENTATTR+SF  GGGGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRADRAVG PS ASSVGSSI+S DAFSAAGSGQTLEAYRK NLRNPATHRPRSRTLNWKDGKEWRMN
Sbjct:  152 VAAVLAKDYSVLKEGEGATKGASAALPPAPWHIEIFAQ-------VRLDTARQRKLHGVSVAREGVYARYANIYKDHAARTYARTIEASRQERGGLEAYRRRVVKASTDAERYRGYVEMDTPRDDPHWEEDGLGLLPADGGSTSTNYAASSNGRESGSVAGFSPSRSSANVDVSLSSEKEDGAGRGLVHGDETARRWPVDRAAPECSMGDGGEPEAPAVSRLDSVTDDENTATTRRSFDHGGGGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRADRAVGTPSLASSVGSSITSTDAFSAAGSGQTLEAYRKTNLRNPATHRPRSRTLNWKDGKEWRMN 493
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BLAST of mRNA_Ecto-sp8_S_contig10823.1212.1 vs. uniprot
Match: A0A6H5KP45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP45_9PHAE)

HSP 1 Score: 512 bits (1319), Expect = 2.090e-180
Identity = 268/304 (88.16%), Postives = 280/304 (92.11%), Query Frame = 1 
Query:  259 VRLDTARQRKRHGVSVAREGVYARYANIYKDHAARTYARTIEASRQERGGLEAYRRRVVKASTDAERYRGYVEMDTPRDDPYWEEDGLGLLPADDGSTSTNCAASSNGRESGNVAGFFPARSSANVDVSLSSEKEDGAGKGLVHGDETARGWPVDGAAPECSVGDGGESEAPAVSRLDSVTDDENTATTRKSFSDGGGGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRADRAVGAPSSASSVGSSISSADAFSAAGSGQTLEAYRKANLRNPATHRPRSRTLNWKDGKEWRMN 1170
            VRL+TARQRK HGVSVAREGVY+RYANIYKDHAA+TYARTIEASRQERGGLEAYR RVVK+S DA+RYRGYVEMDTPRDDP+WEEDGLGLLPA+DGSTSTNCAASSNGR+SG VAGF PARSSA VDVSLSSEKEDGAG+GLVHGDET    P DGAAPE SVG+ GESEA AVSRLDSVTDDENTATTR+SFSDGG GGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRA RAVGAPS ASSVGSSI+S DA SAA SGQ LEAYRKA LRNPATHRP S TLNWKDGKEWRMN
Sbjct:    8 VRLETARQRKLHGVSVAREGVYSRYANIYKDHAAQTYARTIEASRQERGGLEAYRHRVVKSSMDAQRYRGYVEMDTPRDDPHWEEDGLGLLPANDGSTSTNCAASSNGRKSGGVAGFSPARSSAKVDVSLSSEKEDGAGEGLVHGDETVEVRPGDGAAPEGSVGENGESEARAVSRLDSVTDDENTATTRRSFSDGGIGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRAGRAVGAPSLASSVGSSITSTDALSAAESGQALEAYRKATLRNPATHRPHSSTLNWKDGKEWRMN 311
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10823.1212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZS2_ECTSI5.460e-22092.26Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KP45_9PHAE2.090e-18088.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10823contigEcto-sp8_S_contig10823:412..2225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score623.6
Seed ortholog evalue6.1e-176
Seed eggNOG ortholog2880.D7FZS2
Model size1173
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-21_004140.1
Cds size1173
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143175.2992449-CDS-Ecto-sp8_S_contig10823:411..13261681143175.2992449-CDS-Ecto-sp8_S_contig10823:411..1326Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10823 412..1326 -
1681143175.309092-CDS-Ecto-sp8_S_contig10823:1680..18421681143175.309092-CDS-Ecto-sp8_S_contig10823:1680..1842Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10823 1681..1842 -
1681143175.3172836-CDS-Ecto-sp8_S_contig10823:2129..22251681143175.3172836-CDS-Ecto-sp8_S_contig10823:2129..2225Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10823 2130..2225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10823.1212.1prot_Ecto-sp8_S_contig10823.1212.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10823 412..2225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10823.1212.1

>prot_Ecto-sp8_S_contig10823.1212.1 ID=prot_Ecto-sp8_S_contig10823.1212.1|Name=mRNA_Ecto-sp8_S_contig10823.1212.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=391bp
AADQGHLEVVKALLEGGAKVDVLDHDNWSPRQSAEFRGFLEVAAVLAKDY
SVLKEGEGATKGASAALPPAPWHIEIFAQARHSSSSVRLDTARQRKRHGV
SVAREGVYARYANIYKDHAARTYARTIEASRQERGGLEAYRRRVVKASTD
AERYRGYVEMDTPRDDPYWEEDGLGLLPADDGSTSTNCAASSNGRESGNV
AGFFPARSSANVDVSLSSEKEDGAGKGLVHGDETARGWPVDGAAPECSVG
DGGESEAPAVSRLDSVTDDENTATTRKSFSDGGGGGRGCFVDVVPFNNIR
AKYLRPWNDTELSRPYHVAPSPTWRADRAVGAPSSASSVGSSISSADAFS
AAGSGQTLEAYRKANLRNPATHRPRSRTLNWKDGKEWRMN*
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mRNA from alignment at Ecto-sp8_S_contig10823:412..2225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10823.1212.1 ID=mRNA_Ecto-sp8_S_contig10823.1212.1|Name=mRNA_Ecto-sp8_S_contig10823.1212.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1814bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10823:412..2225- (Ectocarpus species8 EcLAC_412)
GCAGCCGACCAAGGGCACCTGGAGGTGGTCAAGGCGCTGCTCGAGGGAGG
GGCGAAGGTGGACGTGCTGGATCACGACAACTGGTCCCCTCGCCAGGTAA
GCGACACTTCCCCTCGCTTCGAAAAGTGGATGAACAAGAGGACGTCTTTT
CCGAGGACGAACGATCATCTACGCGAAAGTAGCCGCAGTTGCCTGGTCCC
CCTCGACCCTTGCACACACCATTACAACAATTCGCTGCCAAGGTGCCATC
AGAGATGCAGTCGAAACAAATGGTACAGCTTCCTCCCCCCAATCTGACAA
TTATTATTATTTACGCCCCATGGATCCGTGACCAGTGTTCACCCACGTTT
GCCTACCCGATCTGTCTTACGATATCTTGGCAGAGTGCGGAGTTCCGAGG
CTTCCTGGAGGTCGCTGCGGTGCTCGCGAAGGACTACTCCGTCCTCAAAG
AGGGGGAGGGAGCTACCAAGGGTGCATCGGCAGCATTGCCTCCCGCCCCG
TGGCACATCGAAATATTTGCCCAGGCAAGGCACAGCTCTTCCAGCGTTCA
AGTACGAGTGTGGAGATGCTTCCAGAACTGCAAATCTTCCAGGACTTAAG
AATATTGCCGAGTCCGGCCGATCGTACCACTGACATCACCTCTCAGAGCT
TTCAGTACCCTCGGAACGAGCTTGACCCTTTCTCATTTAAGTGTTGCACC
CTTATGTTGTTAAAAATCGCTCCCCGAGAACAAACGTGCCCCTTCAGTTA
CATGCGTAGCGTTGCAGGTAGACGTTCCTAGGGAATGGCATGGTGGGACA
AACGAGCTATAGAATGCGAAAGTGTTGAGTGCCGGTCGACGCTCGTGAAA
CTCTTGGTCAATCTTGCGATCACCGCCCCGTGGTTCCAACGCCTACCAGG
TTCGCCTAGACACCGCGAGGCAGCGAAAACGCCACGGCGTTTCTGTCGCG
CGCGAAGGAGTGTACGCCAGGTATGCCAACATCTACAAGGACCACGCCGC
CCGGACCTACGCCCGCACGATCGAGGCCTCTCGGCAGGAGAGGGGCGGGC
TCGAGGCCTACCGTCGCCGCGTCGTGAAAGCGTCGACGGACGCGGAGCGC
TACCGAGGGTACGTCGAGATGGACACGCCCAGGGACGACCCCTACTGGGA
GGAGGACGGGCTAGGGCTGCTGCCGGCCGACGATGGCAGCACGTCAACGA
ATTGCGCGGCTTCTTCCAACGGCCGAGAGAGTGGCAACGTTGCAGGATTC
TTCCCGGCAAGAAGCAGTGCCAACGTGGACGTTTCCTTGTCTAGCGAAAA
AGAGGATGGAGCAGGCAAAGGGCTCGTGCACGGCGACGAGACTGCCCGGG
GTTGGCCAGTAGATGGGGCTGCGCCCGAGTGCTCGGTGGGTGACGGCGGG
GAGTCGGAGGCGCCTGCGGTATCGAGGTTGGATAGCGTCACCGACGACGA
AAATACCGCGACAACACGAAAATCGTTCAGCGACGGTGGCGGTGGAGGTC
GTGGTTGTTTCGTGGACGTGGTCCCGTTCAACAACATCCGCGCCAAGTAC
TTGAGACCGTGGAATGACACAGAGCTGTCCAGGCCCTACCACGTCGCCCC
TTCGCCGACCTGGAGGGCGGATAGGGCAGTAGGAGCCCCAAGTTCGGCCT
CGAGCGTGGGGTCATCTATTTCCTCTGCCGACGCCTTTTCTGCTGCCGGA
AGTGGACAAACGTTGGAAGCGTACCGAAAGGCAAACCTGAGGAACCCGGC
GACGCACCGGCCGCGCAGCAGGACGTTGAACTGGAAGGATGGGAAAGAAT
GGCGCATGAACTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10823:412..2225-

>mRNA_Ecto-sp8_S_contig10823.1212.1 ID=mRNA_Ecto-sp8_S_contig10823.1212.1|Name=mRNA_Ecto-sp8_S_contig10823.1212.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1173bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10823:412..2225- (Ectocarpus species8 EcLAC_412)
GCAGCCGACCAAGGGCACCTGGAGGTGGTCAAGGCGCTGCTCGAGGGAGG
GGCGAAGGTGGACGTGCTGGATCACGACAACTGGTCCCCTCGCCAGAGTG
CGGAGTTCCGAGGCTTCCTGGAGGTCGCTGCGGTGCTCGCGAAGGACTAC
TCCGTCCTCAAAGAGGGGGAGGGAGCTACCAAGGGTGCATCGGCAGCATT
GCCTCCCGCCCCGTGGCACATCGAAATATTTGCCCAGGCAAGGCACAGCT
CTTCCAGCGTTCGCCTAGACACCGCGAGGCAGCGAAAACGCCACGGCGTT
TCTGTCGCGCGCGAAGGAGTGTACGCCAGGTATGCCAACATCTACAAGGA
CCACGCCGCCCGGACCTACGCCCGCACGATCGAGGCCTCTCGGCAGGAGA
GGGGCGGGCTCGAGGCCTACCGTCGCCGCGTCGTGAAAGCGTCGACGGAC
GCGGAGCGCTACCGAGGGTACGTCGAGATGGACACGCCCAGGGACGACCC
CTACTGGGAGGAGGACGGGCTAGGGCTGCTGCCGGCCGACGATGGCAGCA
CGTCAACGAATTGCGCGGCTTCTTCCAACGGCCGAGAGAGTGGCAACGTT
GCAGGATTCTTCCCGGCAAGAAGCAGTGCCAACGTGGACGTTTCCTTGTC
TAGCGAAAAAGAGGATGGAGCAGGCAAAGGGCTCGTGCACGGCGACGAGA
CTGCCCGGGGTTGGCCAGTAGATGGGGCTGCGCCCGAGTGCTCGGTGGGT
GACGGCGGGGAGTCGGAGGCGCCTGCGGTATCGAGGTTGGATAGCGTCAC
CGACGACGAAAATACCGCGACAACACGAAAATCGTTCAGCGACGGTGGCG
GTGGAGGTCGTGGTTGTTTCGTGGACGTGGTCCCGTTCAACAACATCCGC
GCCAAGTACTTGAGACCGTGGAATGACACAGAGCTGTCCAGGCCCTACCA
CGTCGCCCCTTCGCCGACCTGGAGGGCGGATAGGGCAGTAGGAGCCCCAA
GTTCGGCCTCGAGCGTGGGGTCATCTATTTCCTCTGCCGACGCCTTTTCT
GCTGCCGGAAGTGGACAAACGTTGGAAGCGTACCGAAAGGCAAACCTGAG
GAACCCGGCGACGCACCGGCCGCGCAGCAGGACGTTGAACTGGAAGGATG
GGAAAGAATGGCGCATGAACTAA
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