mRNA_Ecto-sp8_S_contig10820.1210.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10820.1210.1
Unique NamemRNA_Ecto-sp8_S_contig10820.1210.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10820.1210.1 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 9.750e-67
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 VAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRVTRKIHPLDSVRLTLNCECGTLSLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLVELKRIFGEGDDDVSD 327
            VAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNR+TRKIHPLDSVRLTLNCECGTLSLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLVELKRIFGEGDDDVSD
Sbjct:  331 VAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRMTRKIHPLDSVRLTLNCECGTLSLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLVELKRIFGEGDDDVSD 439
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BLAST of mRNA_Ecto-sp8_S_contig10820.1210.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 9.770e-67
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 VAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRVTRKIHPLDSVRLTLNCECGTLSLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLVELKRIFGEGDDDVSD 327
            VAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRVTRKIHPLDSVRLTLNCECGTL+LEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLVELKRIFGEGDDDVSD
Sbjct:  457 VAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRVTRKIHPLDSVRLTLNCECGTLNLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLVELKRIFGEGDDDVSD 565
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BLAST of mRNA_Ecto-sp8_S_contig10820.1210.1 vs. uniprot
Match: A0A1V9YAM4_9STRA (HECT E3 ubiquitin ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAM4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.640e-16
Identity = 41/98 (41.84%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    4 AVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRVTRKIHPLDSVRLTLNCECGTLSLEVNGVDQGVVFSNVPP-EVHPAVCFYGVAKSVRLVELKR 294
            A+ PVT S Y+ S  +WM+R Y+G  Y+ G + +R   K+HP D V++ ++   GT++  +NGVD GVVF+++   EV+PAV FYG  K + L+ L +
Sbjct:  565 AILPVTVSGYDSSPSLWMLRGYNGNLYARGHKLSRSIGKVHPGDVVQIDVDLTAGTMAYAINGVDFGVVFTDLAGHEVYPAVSFYGSGKVITLLSLHK 662
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BLAST of mRNA_Ecto-sp8_S_contig10820.1210.1 vs. uniprot
Match: A0A7S1C7A9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7A9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.130e-11
Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:    1 VAVNPVTNSCYEDSHQMWMVRCYSGETYSNGG--RRNRVTRKIHPLDSVRLTLNCECGTLSLEVNGVDQGVVFSNVPP-EVHPAVCFYGVAKSVRLVELK 291
            VA  P+T+  Y+ +   WM+R Y+G TY+     +      KIH  + VR TL+C+ GTL++ +NG DQGVVF N+    ++P   FY   + + +  L+
Sbjct:  519 VARKPMTSPGYDGNPNTWMIRSYNGVTYAPSAEYKAQSSVAKIHQGNVVRFTLDCDAGTLAVNINGADQGVVFQNLQGITLYPCAMFYSGNRKISIRSLR 618
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BLAST of mRNA_Ecto-sp8_S_contig10820.1210.1 vs. uniprot
Match: A0A7S0JWR0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JWR0_CAFRO)

HSP 1 Score: 60.5 bits (145), Expect = 1.080e-7
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:   13 PVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRVTRKIHPLDSVRLTLNCECGTLSLEVNGVDQG---VVFSNVPPE-VHPAVCFYGVAKSVRLVELK 291
            PV++  Y++S  MWMVRCY+G  Y NG   +     IHP + VR   N   GT+ + ++   Q     VF+ +  + ++PAVC Y   K++R    K
Sbjct:  362 PVSDHRYQNSDDMWMVRCYNGGVYHNG--MSSSVSNIHPGNVVRFKANMTAGTVHMWIDDEPQNGGDPVFTGLTGQTIYPAVCGYSRDKTIRFKSFK 456
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BLAST of mRNA_Ecto-sp8_S_contig10820.1210.1 vs. uniprot
Match: A0A5A8CKN7_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKN7_CAFRO)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-7
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:   13 PVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRVTRKIHPLDSVRLTLNCECGTLSLEVNGVDQG---VVFSNVPPE-VHPAVCFYGVAKSVRLVELK 291
            PV++  Y++S  MWMVRCY+G  Y NG   +     IHP + VR   N   GT+ + ++   Q     VF+ +  + ++PAVC Y   K++R    K
Sbjct:  433 PVSDHRYQNSDDMWMVRCYNGGVYHNG--MSSSVSNIHPGNVVRFKANMTAGTVHMWIDDEPQNGGDPVFTGLTGQTIYPAVCGYSRDKTIRFKSFK 527
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10820.1210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KD94_9PHAE9.750e-6799.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVC4_ECTSI9.770e-6799.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9YAM4_9STRA6.640e-1641.84HECT E3 ubiquitin ligase n=1 Tax=Achlya hypogyna T... [more]
A0A7S1C7A9_9STRA1.130e-1136.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0JWR0_CAFRO1.080e-735.05Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8CKN7_CAFRO1.220e-735.05Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10820contigEcto-sp8_S_contig10820:3591..4244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score229.6
Seed ortholog evalue1.1e-57
Seed eggNOG ortholog2880.D7FVC4
Preferred nameHERC1
Model size490
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Exons2
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsCOG5184@1,KOG1426@2759,KOG1477@1,KOG1477@2759
EC2.3.2.26
Cds size486
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143175.1625214-CDS-Ecto-sp8_S_contig10820:3592..40301681143175.1625214-CDS-Ecto-sp8_S_contig10820:3592..4030Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10820 3593..4030 -
1681143175.1813872-CDS-Ecto-sp8_S_contig10820:4196..42441681143175.1813872-CDS-Ecto-sp8_S_contig10820:4196..4244Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10820 4197..4244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10820.1210.1prot_Ecto-sp8_S_contig10820.1210.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10820 3593..4244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10820.1210.1

>prot_Ecto-sp8_S_contig10820.1210.1 ID=prot_Ecto-sp8_S_contig10820.1210.1|Name=mRNA_Ecto-sp8_S_contig10820.1210.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=162bp
VAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRVTRKIHPLDSVRLT
LNCECGTLSLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLVELKRIF
GEGDDDVSDSDDESDAEATPVQTPPAAQHEHQPSAEALADTGDGGDGDAS
ASPAQAVRAKKE
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mRNA from alignment at Ecto-sp8_S_contig10820:3591..4244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10820.1210.1 ID=mRNA_Ecto-sp8_S_contig10820.1210.1|Name=mRNA_Ecto-sp8_S_contig10820.1210.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=654bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10820:3591..4244- (Ectocarpus species8 EcLAC_412)
GTTGCGGTCAACCCAGTGACGAACTCCTGCTACGAAGACTCCCATCAGGT
AGGCAACCTCCCCCGGTGTCGATCGCGTATGTTTGGCTCTCTACCGAGAA
TAAGCGAATGTGTGACGGCTCTGCTGTAGGTTCTCGAATCAAGCGATGTC
GATTTCTACCCCGTTGCTTGAAACGATCTGCCCCTGATTGATGAACCCTT
CCTCCTCTCTTCAGATGTGGATGGTCCGTTGCTACAGCGGAGAAACATAC
AGCAATGGTGGACGCCGCAATCGCGTGACCCGAAAAATCCATCCGCTGGA
TTCGGTACGCCTGACACTAAACTGCGAATGTGGCACGCTTTCTTTGGAGG
TCAACGGGGTGGACCAAGGCGTGGTTTTCTCAAACGTACCGCCGGAAGTT
CACCCGGCGGTGTGCTTCTATGGAGTCGCCAAGTCGGTTCGGCTGGTAGA
ACTGAAGCGTATCTTCGGGGAGGGCGATGACGATGTGTCAGACAGCGACG
ATGAGAGTGACGCAGAAGCGACACCAGTGCAGACCCCACCGGCTGCGCAG
CACGAACACCAGCCATCAGCAGAAGCTTTGGCCGACACTGGTGACGGTGG
TGACGGGGATGCGTCTGCCAGTCCGGCCCAAGCTGTTCGTGCGAAAAAGG
AGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10820:3591..4244-

>mRNA_Ecto-sp8_S_contig10820.1210.1 ID=mRNA_Ecto-sp8_S_contig10820.1210.1|Name=mRNA_Ecto-sp8_S_contig10820.1210.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10820:3591..4244- (Ectocarpus species8 EcLAC_412)
GTTGCGGTCAACCCAGTGACGAACTCCTGCTACGAAGACTCCCATCAGAT
GTGGATGGTCCGTTGCTACAGCGGAGAAACATACAGCAATGGTGGACGCC
GCAATCGCGTGACCCGAAAAATCCATCCGCTGGATTCGGTACGCCTGACA
CTAAACTGCGAATGTGGCACGCTTTCTTTGGAGGTCAACGGGGTGGACCA
AGGCGTGGTTTTCTCAAACGTACCGCCGGAAGTTCACCCGGCGGTGTGCT
TCTATGGAGTCGCCAAGTCGGTTCGGCTGGTAGAACTGAAGCGTATCTTC
GGGGAGGGCGATGACGATGTGTCAGACAGCGACGATGAGAGTGACGCAGA
AGCGACACCAGTGCAGACCCCACCGGCTGCGCAGCACGAACACCAGCCAT
CAGCAGAAGCTTTGGCCGACACTGGTGACGGTGGTGACGGGGATGCGTCT
GCCAGTCCGGCCCAAGCTGTTCGTGCGAAAAAGGAG
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