mRNA_Ecto-sp8_S_contig10820.1207.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10820.1207.1
Unique NamemRNA_Ecto-sp8_S_contig10820.1207.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10820.1207.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.240e-54
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:    1 KGNSAGSSSRPGSGESDGGPNSYWDQLVAGGAGGTTLSFTLLDTCQQHLLCMVLERDCTANDPYELLLCQYGQCLLQVCCRVLSAECPWADTE 279
            +GNSAGSSSRPGSGESDGGPNSYWDQLVAGGAGGTTLSFTLLDTCQQHLLCMVLERDCTANDPYELLLCQYGQCLLQVCCRVLSA+CPW DTE
Sbjct: 1084 RGNSAGSSSRPGSGESDGGPNSYWDQLVAGGAGGTTLSFTLLDTCQQHLLCMVLERDCTANDPYELLLCQYGQCLLQVCCRVLSADCPWTDTE 1176
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BLAST of mRNA_Ecto-sp8_S_contig10820.1207.1 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.260e-52
Identity = 88/93 (94.62%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    1 KGNSAGSSSRPGSGESDGGPNSYWDQLVAGGAGGTTLSFTLLDTCQQHLLCMVLERDCTANDPYELLLCQYGQCLLQVCCRVLSAECPWADTE 279
            KGNSAGS SRPGSGESD GPNSYWDQLVAGGAGGTTLSFTLLDTCQQHLLCMVLERDCT NDPYELLLCQYGQCLLQVCCRVLSAECPW +TE
Sbjct:  991 KGNSAGSRSRPGSGESDSGPNSYWDQLVAGGAGGTTLSFTLLDTCQQHLLCMVLERDCTGNDPYELLLCQYGQCLLQVCCRVLSAECPWTETE 1083
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10820.1207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVC4_ECTSI2.240e-5496.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD94_9PHAE1.260e-5294.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10820contigEcto-sp8_S_contig10820:1053..1867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score192.2
Seed ortholog evalue1.1e-46
Seed eggNOG ortholog2880.D7FVC4
Preferred nameHERC1
Model size281
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Exons2
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsCOG5184@1,KOG1426@2759,KOG1477@1,KOG1477@2759
EC2.3.2.26
Cds size279
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143175.0982244-CDS-Ecto-sp8_S_contig10820:1052..11001681143175.0982244-CDS-Ecto-sp8_S_contig10820:1052..1100Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10820 1053..1100 -
1681143175.1071427-CDS-Ecto-sp8_S_contig10820:1636..18671681143175.1071427-CDS-Ecto-sp8_S_contig10820:1636..1867Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10820 1637..1867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10820.1207.1prot_Ecto-sp8_S_contig10820.1207.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10820 1053..1867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10820.1207.1

>prot_Ecto-sp8_S_contig10820.1207.1 ID=prot_Ecto-sp8_S_contig10820.1207.1|Name=mRNA_Ecto-sp8_S_contig10820.1207.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=93bp
KGNSAGSSSRPGSGESDGGPNSYWDQLVAGGAGGTTLSFTLLDTCQQHLL
CMVLERDCTANDPYELLLCQYGQCLLQVCCRVLSAECPWADTE
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mRNA from alignment at Ecto-sp8_S_contig10820:1053..1867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10820.1207.1 ID=mRNA_Ecto-sp8_S_contig10820.1207.1|Name=mRNA_Ecto-sp8_S_contig10820.1207.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=815bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10820:1053..1867- (Ectocarpus species8 EcLAC_412)
AAGGGAAACAGCGCCGGCAGCAGCTCGCGACCAGGCAGTGGTGAATCGGA
CGGCGGTCCGAACAGCTACTGGGACCAACTGGTGGCCGGCGGGGCTGGAG
GAACGACGCTCAGCTTCACATTGCTCGACACATGCCAGCAGCACCTTTTG
TGCATGGTCTTGGAACGGGATTGCACTGCAAATGATCCGTACGAGCTTTT
GCTGTGTCAATATGGCCAGTGCCTCCTGCAGGTACGGCGTCCGTGGGTTT
GATGAACAATATACGCTTTTGGGAGGAAAAGCGCTCTCTTGTGAATAATT
GATAGTAGGTTGATTGGAAGAGTGGGCTCCATGCGGACACATTCAAAGTG
TAGGAAAGACGAACTCTTAGAAGCATTCCGAGAAACTTGAGAACTCGGAA
GACGGGTGATGGATACGCGGATGTGCCACGTGCTGCTTGCTGGCATGCAT
GACCCGGCGGACCATGGACTTTCTCTCCTTGCTCTCCTTGCCCAGATATC
AACGGCGAAGCCCTGCCTGCCCTCCGTAGCGTTAAGTTACCTCGACCTTG
GGATTACCCTGACGCGTCGCCTATGGAAGGAGCCTAGCTAAAATCGTTCG
CTTGGTATATTTATAGCATGTATCCACCAGTTGTGTCTTGAAATTTGAGT
CGCGCGAAAGACGTCCTCATTGACACTATCACATGTGACCCACGTATGTA
CTTCACACCGCTCTTGTTTGTCCCCGAACATGTCATGTGCGGGTTGCGTT
CAACTACACATGCATAGGTGTGCTGCCGTGTGCTGAGCGCGGAGTGTCCA
TGGGCTGATACCGAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10820:1053..1867-

>mRNA_Ecto-sp8_S_contig10820.1207.1 ID=mRNA_Ecto-sp8_S_contig10820.1207.1|Name=mRNA_Ecto-sp8_S_contig10820.1207.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10820:1053..1867- (Ectocarpus species8 EcLAC_412)
AAGGGAAACAGCGCCGGCAGCAGCTCGCGACCAGGCAGTGGTGAATCGGA
CGGCGGTCCGAACAGCTACTGGGACCAACTGGTGGCCGGCGGGGCTGGAG
GAACGACGCTCAGCTTCACATTGCTCGACACATGCCAGCAGCACCTTTTG
TGCATGGTCTTGGAACGGGATTGCACTGCAAATGATCCGTACGAGCTTTT
GCTGTGTCAATATGGCCAGTGCCTCCTGCAGGTGTGCTGCCGTGTGCTGA
GCGCGGAGTGTCCATGGGCTGATACCGAA
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