mRNA_Ecto-sp8_S_contig1082.1205.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: D7G6Z9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z9_ECTSI) HSP 1 Score: 464 bits (1194), Expect = 2.400e-164 Identity = 242/259 (93.44%), Postives = 248/259 (95.75%), Query Frame = 1
Query: 1 CVIVRRCIFIFPMIPAPSALGDLPLGALPEAVTSAESAAGPTCSSADEVNDDFSILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEATQRLAGIGAAAPGSARNTIRRPRGGGDDITAGLKAILPNKEYADVAGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIYRCLMLPSCLSQMKKSVFTTNLYSI-FDRSTV 774
CV+VRRCIFIFPMIP PSALGDLPLGAL EAV SAESAAGPTCSSADEV+DDFSILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEATQRLAG+GAAAPGS RNT RRPRGGGDDITA LKAILPNKEYAD AGEWVQTVSGTVR+RGELEKVQNKVEARLATLQARPGAVCAVRES+FSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIYRCLMLPSCL QMKKSVFTT L+SI FDR TV
Sbjct: 7 CVVVRRCIFIFPMIPEPSALGDLPLGALTEAV-SAESAAGPTCSSADEVDDDFSILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEATQRLAGVGAAAPGSTRNTTRRPRGGGDDITAVLKAILPNKEYADAAGEWVQTVSGTVRSRGELEKVQNKVEARLATLQARPGAVCAVRESVFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIYRCLMLPSCLFQMKKSVFTTELHSIIFDRRTV 264
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN) HSP 1 Score: 101 bits (251), Expect = 1.130e-22 Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 385 LKAILPNKEYADVAGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIY 684
+ ++LP +E+ +G W+Q VS TR ++ +Q ++ RL QAR +C VRE ++S+ YDE+IR+ITL PERGLLLLR+RDE RM +D Y +Y
Sbjct: 2 VNSMLPPREWTQTSGTWMQYVSKKTATRMDVISLQEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLY 101
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: D8LS54_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS54_ECTSI) HSP 1 Score: 100 bits (250), Expect = 3.000e-22 Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query: 235 LPQYISLYASDERRPDEATQRLAGIGAAAPGSARNTIRRPRGGGDDITAGLKAILPNKEYADVAGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIY 684
+P + SL D T G GA G A T+ RP +DI L +ILP +E+ D WVQ VS T TR ++ +Q +++ +L QAR +C VRE ++S+ +DE+IR++T+ ERGLLLLR+RDE M + Y +Y
Sbjct: 2 IPPHNSLVKYDNPILVSTTGNRGGKGAKKKGQAP-TVERPSSQTEDI---LNSILPPREWTDDGQLWVQYVSSTPATRLDVTNLQEQLDQKLQQRQARETGICPVREELYSQCFDELIRQVTINCAERGLLLLRVRDEIHMTIAAYQTMY 147
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.130e-22 Identity = 45/100 (45.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 385 LKAILPNKEYADVAGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIY 684
+ +++P +E+ DV+G W+Q +S TR ++ +Q +++ RL QAR +C VRE ++S+ +DE+IR +TL SPERGLLLLR+RDE RM +D Y +Y
Sbjct: 64 MNSMIPPREWTDVSGTWMQYISKESATRLDVITLQEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLY 163
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: A0A1V9YGG0_9STRA (Dynein light chain intermediate polypeptide n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YGG0_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.470e-22 Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 316 AAPGSARNTIRRPRGGGDDITAGLKAILPNKEYADVAGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIY 684
A PGS + + R +D+ L A+LP +++ + G W++ S TR ++ K+Q +++A+L QAR +C VRE I+++ +DE+IRE+T+ SPERGLLLLR+RDE RM D Y +Y
Sbjct: 31 ATPGSKIDPVARI----EDV---LNAMLPPQQWKEDTGYWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLY 146
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA) HSP 1 Score: 100 bits (249), Expect = 5.850e-22 Identity = 46/100 (46.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query: 385 LKAILPNKEYADVAGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIY 684
L A+LP + + + G W++ VS TR ++ K+Q +++A+L QAR +C VRE I+S+ +DE+IR++T+ SPERGLLLLR+RDE RM D Y +Y
Sbjct: 45 LNAMLPAQSWKEDTGFWMRYVSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLY 144
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: A0A024UH61_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UH61_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.190e-21 Identity = 45/100 (45.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query: 385 LKAILPNKEYADVAGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIY 684
L A+LP + + + G W++ S TR ++ K+Q +++A+L QAR +C VRE I+++ +DE+IRE+T+ SPERGLLLLR+RDE RM D Y +Y
Sbjct: 47 LNAMLPPQTWKEETGHWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICNVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLY 146
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: A0A8K1C6X6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6X6_PYTOL) HSP 1 Score: 98.2 bits (243), Expect = 5.810e-21 Identity = 60/161 (37.27%), Postives = 93/161 (57.76%), Query Frame = 1
Query: 220 MGHDSLPQYISLYAS-----DERRPDEATQRLAGIGAAAPGSARNTIRRPRGGGDDITAGLKAILPNKEYADV-AGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIY 684
M S P+ + LY + P + A +GA G+ + +I+R +DI LKA+LP + + + G W++ VS T TR ++ K+Q +++A+L QAR +C VRE I+ + +DE+IRE+ + SPERGLLLLR+RDE R+ D Y +Y
Sbjct: 1 MASPSPPESLVLYGDPIFTGETVDPSKKAPSAAALGAN--GAEKESIQRI----EDI---LKAMLPPQMWHEEDTGYWMRYVSATPSTRFDVIKLQEEMDAKLMKRQARENGICPVREDIYHQCFDELIREVAINSPERGLLLLRVRDEIRLTTDAYKTLY 152
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: L1JWL5_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JWL5_GUITC) HSP 1 Score: 97.8 bits (242), Expect = 5.830e-21 Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 385 LKAILPNKEYADVAGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIYR-CL---MLPSCLSQMKKSVFTTNL 747
L +ILP +E+ + WVQ VS T TR ++ +Q +++++L T QAR +C VRE +F + +DEVIR++T+ ERGLLLLR+RDE RM + Y +Y C+ M + LS+ +K N+
Sbjct: 37 LNSILPPREWTEDGQLWVQFVSSTPATRLDVINLQEELDSKLQTRQARETGICPVREELFRQTFDEVIRQVTINCAERGLLLLRVRDEIRMRIAAYQTLYESCIAFGMRKALLSEQRKMEMEENV 161
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Match: A0A7S4NUJ5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NUJ5_GUITH) HSP 1 Score: 95.5 bits (236), Expect = 8.010e-21 Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 385 LKAILPNKEYADVAGEWVQTVSGTVRTRGELEKVQNKVEARLATLQARPGAVCAVRESIFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIY 684
L +ILP +E+ + WVQ VS T TR ++ +Q +++++L T QAR +C VRE +F + +DEVIR++T+ ERGLLLLR+RDE RM + Y +Y
Sbjct: 58 LNSILPPREWTEDGQLWVQFVSSTPATRLDVINLQEELDSKLQTRQARETGICPVREELFRQTFDEVIRQVTINCAERGLLLLRVRDEIRMRIAAYQTLY 157 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1082.1205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1082.1205.1 >prot_Ecto-sp8_S_contig1082.1205.1 ID=prot_Ecto-sp8_S_contig1082.1205.1|Name=mRNA_Ecto-sp8_S_contig1082.1205.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=258bp CVIVRRCIFIFPMIPAPSALGDLPLGALPEAVTSAESAAGPTCSSADEVNback to top mRNA from alignment at Ecto-sp8_S_contig1082:7860..9585- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig1082.1205.1 ID=mRNA_Ecto-sp8_S_contig1082.1205.1|Name=mRNA_Ecto-sp8_S_contig1082.1205.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1726bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1082:7860..9585- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1082:7860..9585- >mRNA_Ecto-sp8_S_contig1082.1205.1 ID=mRNA_Ecto-sp8_S_contig1082.1205.1|Name=mRNA_Ecto-sp8_S_contig1082.1205.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1082:7860..9585- (Ectocarpus species8 EcLAC_412)back to top |