mRNA_Ecto-sp8_S_contig1082.1202.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1082.1202.1
Unique NamemRNA_Ecto-sp8_S_contig1082.1202.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: D7G6Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z7_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.790e-49
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 1
Query:    7 IFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGWRGCYGRTLLGAAACGDGDQMVQALLEAGATDDVN 252
            IFKL+Q EATPEQWKQWLR PLEHAAAKGNLDLFTRLMDAGADG +GWRGCYGRTLLGAAACGDGDQMV+ALLEAGATDDVN
Sbjct:    4 IFKLVQEEATPEQWKQWLRVPLEHAAAKGNLDLFTRLMDAGADGCSGWRGCYGRTLLGAAACGDGDQMVRALLEAGATDDVN 85          
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.430e-40
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 1
Query:    1 MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGWRGCYGRTLLGAAACGDG-DQMVQALLEAGATDDVN 252
            +EIFKL++ EA PEQWKQW RAPLEHA A+GNLDLFTRLMDAGADG AGWRGC+GRTLLGAAACG+  D+MV+ALLEAGA  DVN
Sbjct:   18 IEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGARRDVN 102          
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: A0A6H5KQY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.400e-38
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGWRGCYGRTLLGAAACGDGDQMVQALLEAGATDDVN 252
            M+IFKL+QAE TPEQWK+WL APL HAAAKG LDLFTRL++AGADGSAGWRGC+GRTLLG AA  DG+QMV+A LEAGATDDVN
Sbjct:   17 MKIFKLVQAEETPEQWKKWLGAPLNHAAAKGKLDLFTRLINAGADGSAGWRGCHGRTLLGEAARSDGNQMVRAFLEAGATDDVN 100          
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 4.700e-36
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGWRGCYGRTLLGAAACGDGDQMVQALLEAGATDDVN 252
            +EIFKL++ EATPEQWK+WLRAPLEHAAA+GNLDLFTRLMDAGA+  AGWRGC+GRTLLGAAA G  ++M++ LL AGATDDVN
Sbjct:   19 IEIFKLLRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANTEAGWRGCHGRTLLGAAALGRSEKMIRTLLTAGATDDVN 102          
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.210e-34
Identity = 66/87 (75.86%), Postives = 72/87 (82.76%), Query Frame = 1
Query:    1 MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGWRG--CYGRTLLGAAACGD-GDQMVQALLEAGATDDVN 252
            +EIFKL++ EAT  QWKQWLR PLEHAAAKGNLDLFTRLMDAGA G  GWRG  C+ RTLLGAAACG   D+M+ ALLEAG TDDVN
Sbjct:   16 IEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAGVTDDVN 102          
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.600e-32
Identity = 62/85 (72.94%), Postives = 76/85 (89.41%), Query Frame = 1
Query:    1 MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGWRGCYGRTLLGAAACGDGDQMVQALL-EAGATDDVN 252
            +EIFKL++ +AT  QW++WLRAPLEHAAA+GN+DLFTRLMDAGADGSAGWRGC+GRTLLGAAA G  +++V+ LL E GAT+DVN
Sbjct:   70 VEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLLAEDGATEDVN 154          
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.270e-32
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGA-DGSAGWRGCYGRTLLGAAACGDGDQMVQALLEAGATDDVN 252
            +EIFKL+Q E T EQWKQWL+ PLEHAAA+GNLDLFTRLMDAG   G  GWRGC GRTLLGAAA G  D++V+ALLEAGA DDVN
Sbjct:   20 IEIFKLVQEEVTSEQWKQWLQVPLEHAAARGNLDLFTRLMDAGGFGGERGWRGCNGRTLLGAAAWGKSDKVVRALLEAGAGDDVN 104          
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.380e-32
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    1 MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGWRGCYGRTLLGAAACGDGDQMVQALLEAGATDDVN 252
            +EIFKL+Q  AT EQWK+WLRAP EHAAA+GNLD FTRLMDAGA+  AGWRGC GRTLLGAAA G  ++MV+  L AGATDDVN
Sbjct:   19 IEIFKLVQRGATSEQWKEWLRAPREHAAAEGNLDFFTRLMDAGANAGAGWRGCNGRTLLGAAAFGRSEKMVRTTLTAGATDDVN 102          
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.600e-31
Identity = 61/84 (72.62%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGWRGCYGRTLLGAAACGDGDQMVQALLEAGATDDVN 252
            +EIFKL+Q EAT +QWK+WLRAPLEHAAA GNL LFTRLMDAGA   AGWRGC GRTLLGAAAC    ++++ALL AGA  DVN
Sbjct:   21 VEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAACSKNKKILRALLTAGAKSDVN 104          
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.350e-31
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 1
Query:    1 MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGWRGCYGRTLLGAAACGDGDQMVQALLEAGATDDV 249
            +EIFKL+Q EAT EQWK+WLRAPLEHAAA+GNLD FTRLMDAGA+  AG RGC+GRTLLGA AC   ++MV+ LL  GATDDV
Sbjct:  519 IEIFKLVQKEATSEQWKEWLRAPLEHAAAEGNLDFFTRLMDAGANVEAGRRGCHGRTLLGATACDRSEKMVRTLLTTGATDDV 601          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1082.1202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Z7_ECTSI3.790e-4992.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQE2_ECTSI3.430e-4080.00Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KQY9_9PHAE1.400e-3880.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQN0_ECTSI4.700e-3677.38Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LQE9_ECTSI1.210e-3475.86Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D7G692_ECTSI1.600e-3272.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB27_ECTSI2.270e-3275.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L812_9PHAE2.380e-3273.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI1.600e-3172.62MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5L7E1_9PHAE4.350e-3173.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1082contigEcto-sp8_S_contig1082:3582..3833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score137.9
Seed ortholog evalue2.2e-30
Seed eggNOG ortholog2880.D8LQE2
Preferred nameANKRD9
Model size252
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_011630.1
Cds size252
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143174.819406-CDS-Ecto-sp8_S_contig1082:3581..38331681143174.819406-CDS-Ecto-sp8_S_contig1082:3581..3833Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1082 3582..3833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1082.1202.1prot_Ecto-sp8_S_contig1082.1202.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1082 3582..3833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1082.1202.1

>prot_Ecto-sp8_S_contig1082.1202.1 ID=prot_Ecto-sp8_S_contig1082.1202.1|Name=mRNA_Ecto-sp8_S_contig1082.1202.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=84bp
MEIFKLIQAEATPEQWKQWLRAPLEHAAAKGNLDLFTRLMDAGADGSAGW
RGCYGRTLLGAAACGDGDQMVQALLEAGATDDVN
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mRNA from alignment at Ecto-sp8_S_contig1082:3582..3833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1082.1202.1 ID=mRNA_Ecto-sp8_S_contig1082.1202.1|Name=mRNA_Ecto-sp8_S_contig1082.1202.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1082:3582..3833+ (Ectocarpus species8 EcLAC_412)
ATGGAAATATTCAAACTTATCCAGGCGGAGGCGACTCCCGAGCAGTGGAA GCAGTGGCTTCGAGCACCTCTGGAGCATGCCGCGGCGAAAGGAAACTTGG ATCTCTTCACACGGCTGATGGACGCTGGTGCTGATGGTAGCGCAGGCTGG CGGGGATGCTATGGCCGAACGCTCCTGGGCGCGGCTGCATGCGGCGACGG CGACCAGATGGTCCAGGCTTTACTCGAAGCTGGAGCGACGGATGATGTAA AC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1082:3582..3833+

>mRNA_Ecto-sp8_S_contig1082.1202.1 ID=mRNA_Ecto-sp8_S_contig1082.1202.1|Name=mRNA_Ecto-sp8_S_contig1082.1202.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1082:3582..3833+ (Ectocarpus species8 EcLAC_412)
ATGGAAATATTCAAACTTATCCAGGCGGAGGCGACTCCCGAGCAGTGGAA
GCAGTGGCTTCGAGCACCTCTGGAGCATGCCGCGGCGAAAGGAAACTTGG
ATCTCTTCACACGGCTGATGGACGCTGGTGCTGATGGTAGCGCAGGCTGG
CGGGGATGCTATGGCCGAACGCTCCTGGGCGCGGCTGCATGCGGCGACGG
CGACCAGATGGTCCAGGCTTTACTCGAAGCTGGAGCGACGGATGATGTAA
AC
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