mRNA_Ecto-sp8_S_contig10815.1201.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10815.1201.1
Unique NamemRNA_Ecto-sp8_S_contig10815.1201.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10815.1201.1 vs. uniprot
Match: D8LRK0_ECTSI (Nucleosome/chromatin assembly factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK0_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.640e-25
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:   64 RFTGTSKGASDELIQVKDVLRVTEKTMQLKKEYEARKGKGSKPSGMGRGRPPKKKPAPTEPS 249
            RFTGTSKGASDE++Q KDVLRVTEKTMQLKKEYEARKGKG KPSG GRGRPP+KKPAPTEPS
Sbjct:   34 RFTGTSKGASDEMVQAKDVLRVTEKTMQLKKEYEARKGKGHKPSGTGRGRPPEKKPAPTEPS 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10815.1201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRK0_ECTSI2.640e-2590.32Nucleosome/chromatin assembly factor group n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10815contigEcto-sp8_S_contig10815:5002..6323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size389
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143174.741578-CDS-Ecto-sp8_S_contig10815:5001..51571681143174.741578-CDS-Ecto-sp8_S_contig10815:5001..5157Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10815 5002..5157 +
1681143174.7515938-CDS-Ecto-sp8_S_contig10815:6091..63221681143174.7515938-CDS-Ecto-sp8_S_contig10815:6091..6322Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10815 6092..6322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10815.1201.1prot_Ecto-sp8_S_contig10815.1201.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10815 5002..6322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10815.1201.1

>prot_Ecto-sp8_S_contig10815.1201.1 ID=prot_Ecto-sp8_S_contig10815.1201.1|Name=mRNA_Ecto-sp8_S_contig10815.1201.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=129bp
SHPKEGEAEAATAAGKVKVKVRFTGTSKGASDELIQVKDVLRVTEKTMQL
KKEYEARKGKGSKPSGMGRGRPPKKKPAPTEPSTAAAAAAPPPTAAKAAA
AAATALSATVVTGALAGENSSSLMPRATI
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mRNA from alignment at Ecto-sp8_S_contig10815:5002..6323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10815.1201.1 ID=mRNA_Ecto-sp8_S_contig10815.1201.1|Name=mRNA_Ecto-sp8_S_contig10815.1201.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1322bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10815:5002..6323+ (Ectocarpus species8 EcLAC_412)
TCCCATCCGAAAGAAGGAGAGGCCGAGGCCGCGACCGCGGCAGGTAAGGT
TAAGGTTAAGGTTCGGTTCACTGGCACCTCGAAGGGCGCGTCGGACGAGC
TGATCCAAGTCAAGGACGTGCTTCGCGTCACCGAAAAGACGATGCAGCTC
AAGAAGGTAGGTACTGTACCATCTGTACAGTACCGTCATACAGTCCTCGT
TTCCTTGACAAGCATGGGTCGCGCTAGCAGGCTGGATGGTCGATGGTTAA
AGGAAGAAAAATTATTATAAAAAAAATCGTATGCTAGGGCAGGGAGACAA
AAAAATAAAGCAATTGTGCCGGTAGAGAGGTTTCTAGTCCACGGGCTGCC
CGGATAGGGGAGCACCCAAGAGACTGAGCAGAAGGTTCCTGTGTTGTTCT
CTTCGTTAGCACGAGCTCTTCATGACCGTGATGAGAAGACTCTTGGTGCT
TCTGGGTCGTCCTCCTGAAATTGCTGGTGATGCTGCCGGTGCTGATGGTG
CTGGTGCTTCTGGAATGATGGTGGTGACTGGCAATTCCTCTCCTGACTTG
TAGACCTCCTTAGATGTCGATGTCTCACAGCACCTACAATAGTGAGTGAT
GAGAGTGCGTTCGGCGTAAGCCCAAGCAGTCGTAGTTGAGTCTTTGCGAT
TCTCAGCGTGAATCCCATGAAACTTTGGCTCGTTTGACGTTTGCGCTCAC
ACACACACACATACGAGTTGGTGTGGACGTTAGTCGTGCCGAACTTTGCG
GTTTGTCGCACCCTGCCTTGTCCACCAACTGCCGAGCGTAGGATGGGAGG
GGCGGTCGCAATATTCCACTGCCTTTATATGAATTTTCTGGTTTGTGCCA
AATTCGGCTGTTTCAATTGGGCAACGATTTGTCCGTATGTCATTCCTGTC
GCCTTGTCGGCGTCCCCGTCTGACTCGATGGCACGTCGCGCTGTTTTGAG
CGTCATTTTCCAGATCGTCACCGCACCTCTTGATGTATCTCCGTCATGTA
TACGCCAACGCCACGTGTGTGATTGTTATCGTCATCCGTGTTATATTTTT
TTGGTACGCGTTCCCATCCGCCCCCTCGAAAAAAAAACAGGAGTACGAGG
CGCGAAAAGGAAAAGGGTCCAAGCCGTCAGGAATGGGCAGGGGTCGCCCA
CCTAAGAAGAAACCAGCCCCGACGGAACCGTCCACAGCAGCAGCAGCAGC
AGCACCACCACCAACAGCAGCAAAAGCAGCAGCAGCAGCAGCAACAGCGC
TATCAGCTACAGTAGTGACGGGCGCTTTGGCCGGTGAGAATTCTTCCTCC
CTGATGCCGCGGGCAACGATAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10815:5002..6323+

>mRNA_Ecto-sp8_S_contig10815.1201.1 ID=mRNA_Ecto-sp8_S_contig10815.1201.1|Name=mRNA_Ecto-sp8_S_contig10815.1201.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10815:5002..6323+ (Ectocarpus species8 EcLAC_412)
TCCCATCCGAAAGAAGGAGAGGCCGAGGCCGCGACCGCGGCAGGTAAGGT
TAAGGTTAAGGTTCGGTTCACTGGCACCTCGAAGGGCGCGTCGGACGAGC
TGATCCAAGTCAAGGACGTGCTTCGCGTCACCGAAAAGACGATGCAGCTC
AAGAAGGAGTACGAGGCGCGAAAAGGAAAAGGGTCCAAGCCGTCAGGAAT
GGGCAGGGGTCGCCCACCTAAGAAGAAACCAGCCCCGACGGAACCGTCCA
CAGCAGCAGCAGCAGCAGCACCACCACCAACAGCAGCAAAAGCAGCAGCA
GCAGCAGCAACAGCGCTATCAGCTACAGTAGTGACGGGCGCTTTGGCCGG
TGAGAATTCTTCCTCCCTGATGCCGCGGGCAACGATA
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