mRNA_Ecto-sp8_S_contig10813.1198.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10813.1198.1
Unique NamemRNA_Ecto-sp8_S_contig10813.1198.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10813.1198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10813contigEcto-sp8_S_contig10813:327..1833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1507
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_003180.1
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143174.6451902-UTR-Ecto-sp8_S_contig10813:326..6421681143174.6451902-UTR-Ecto-sp8_S_contig10813:326..642Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10813 327..642 +
1681143174.660143-UTR-Ecto-sp8_S_contig10813:933..18331681143174.660143-UTR-Ecto-sp8_S_contig10813:933..1833Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10813 934..1833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143174.6529388-CDS-Ecto-sp8_S_contig10813:642..9331681143174.6529388-CDS-Ecto-sp8_S_contig10813:642..933Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10813 643..933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10813.1198.1prot_Ecto-sp8_S_contig10813.1198.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10813 643..933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10813.1198.1

>prot_Ecto-sp8_S_contig10813.1198.1 ID=prot_Ecto-sp8_S_contig10813.1198.1|Name=mRNA_Ecto-sp8_S_contig10813.1198.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=97bp
MLNVALGLGILGMSHRSSFLRCSGPIMNECLAHTHTRTRFRRGAPQIHSF
DADVGLLPQEGRALLRAHALLLLLRCPRHDFSFFCASAPSESECET*
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mRNA from alignment at Ecto-sp8_S_contig10813:327..1833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10813.1198.1 ID=mRNA_Ecto-sp8_S_contig10813.1198.1|Name=mRNA_Ecto-sp8_S_contig10813.1198.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1507bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10813:327..1833+ (Ectocarpus species8 EcLAC_412)
GGGGAGGGGAGTGATGACGAGGCCATCCGTTGACAATTTTGTTTTTGTGT
CCAATGTTGGGGGTTTTCGGGCGCTTGCTGCTGCTGCGGCCGCTCTCTCT
GCATTGCTGGTGAGAATCTAGCCTGACGTCCGCCCGTTGATTTTTCCGGA
ATATTGTTTGGTTTTTCTCTGCTGTTCCGTCTATGAACAGTTGGCGTTGG
CCCCCGGCGTACTGGAAACTTTGTACTTCGCGTAAAAGTTGTATTTATTT
TTGTCTCTGCGTGCTATCATTCGTGAGAGAAAGGTGTTCGGGGGTCTGTC
TGGGTTGGATGGATGGATGCTGAATGTAGCGTTGGGGCTGGGGATCCTTG
GCATGTCGCATAGGTCCTCTTTTCTACGATGCTCAGGTCCGATTATGAAT
GAATGCCTGGCACACACGCACACACGCACTCGTTTTCGCAGAGGGGCCCC
GCAGATTCATTCGTTCGACGCTGATGTAGGGTTGCTGCCCCAAGAAGGGA
GAGCGCTTTTGAGAGCGCACGCGCTTCTTCTGCTGTTGAGGTGCCCCCGG
CACGATTTTTCTTTTTTTTGCGCCTCGGCACCGTCGGAGAGCGAGTGCGA
GACGTGACATGCCGCTTGGAGTTTCACGCCCAGGAGAGATTTTCGTAAAT
CGGGGGCATCATGGATAGGGTTCCCGTTCGCGGAACGCCTGAAGAGGACT
GGCTATTGTGATCAGGGCAATACACTATCGAGGATGGTGATGTCTGATTT
TTAGGATCTAAGCGCGACCGCCGCCGCCCCGGATTTGCTCTTGGCGGGGG
GGATAGCTCAAGGCTTACCAAATGCAGTCAAGGGTCAAAGCGAGGATTGG
GATGATCAGAACCGCGACAATGCTGCTGGCGGTAGACATGTCGTCACATG
TCATGGCAGTCGTTGTCTTGTTGGATTTTTTGGCGAGTCGATTTTCCTCC
CGCTTGTCGATCGATGTGCGTGCTGTCCGCCGAAACATACATGCCGATGT
ACATACGTATGCATATATATGTGCGCTTCTTTTTCGATTGGCTTTCTGCC
CAGTTTGCGTTAAGGGTTGGACGGAGACACTAAGGGCGGGGCTGTGACTA
TGACTTCGCGGTTGCAGGAGGCGGTTTGAACGGACCGGTGTTGCGGGTAA
CCTCCAGCTGCGATAGCCTACTACATAGCAGTGTTAAAATTGGTGTGGGT
ATGCCGTCGAGTTTTTTTTTGCCGACGCCCTGAACTACGTGCGTATAGGT
ACGGGGCGAGGAGGGTCGAGAGAAAAACAGACGAAGAGCAAGGGCGGAGG
ACGGCTTGCGGTTGCAAGAATCGCTCGGGGCACTCACGTCGCCTGAAAAA
AACGCTGTTGTTGTTATACATACATGTATGGTACCTTCGCAGTTGTTTTA
TTGTTGTTGGCGTGGGGCTGGATGCCTTTTTGTTTCATTCGTTCGTACTA
CTGTGTGGGGAATGAATGGTGGTTGTGATCGATAGATAGATACAAAAGCG
CGCGCGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10813:327..1833+

>mRNA_Ecto-sp8_S_contig10813.1198.1 ID=mRNA_Ecto-sp8_S_contig10813.1198.1|Name=mRNA_Ecto-sp8_S_contig10813.1198.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10813:327..1833+ (Ectocarpus species8 EcLAC_412)
ATGCTGAATGTAGCGTTGGGGCTGGGGATCCTTGGCATGTCGCATAGGTC
CTCTTTTCTACGATGCTCAGGTCCGATTATGAATGAATGCCTGGCACACA
CGCACACACGCACTCGTTTTCGCAGAGGGGCCCCGCAGATTCATTCGTTC
GACGCTGATGTAGGGTTGCTGCCCCAAGAAGGGAGAGCGCTTTTGAGAGC
GCACGCGCTTCTTCTGCTGTTGAGGTGCCCCCGGCACGATTTTTCTTTTT
TTTGCGCCTCGGCACCGTCGGAGAGCGAGTGCGAGACGTGA
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