mRNA_Ecto-sp8_S_contig10804.1188.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10804.1188.1
Unique NamemRNA_Ecto-sp8_S_contig10804.1188.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10804.1188.1 vs. uniprot
Match: D8LIP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP3_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 2.380e-88
Identity = 139/145 (95.86%), Postives = 139/145 (95.86%), Query Frame = 1 
Query:    1 MGQEPKITGALSLLVLLVLLVCYSRVDLFATASSGHLRTSDDPRVSSREAYGRRDGDQGWQRAAEEKEGLAAARAPPAALGRSLDSFPSASDATIMFLHVFKCAGTSLREVFMALAEEKGWSRAVVEECTRRRSPRRLGAGPALT 435
            MGQE KITGALSLLVLLVLLVCYSRVDLFATASSGHLRTSDDPRVSS EAYGR DGD GWQRAAEEKEGLAAARAPPA LGRSLDSFPSASDATIMFLHVFKCAGTSLREVFMALAEEKGWS AVVEECTRRRSPRRLGAGPALT
Sbjct:    1 MGQEAKITGALSLLVLLVLLVCYSRVDLFATASSGHLRTSDDPRVSSTEAYGRGDGDSGWQRAAEEKEGLAAARAPPAVLGRSLDSFPSASDATIMFLHVFKCAGTSLREVFMALAEEKGWSHAVVEECTRRRSPRRLGAGPALT 145
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BLAST of mRNA_Ecto-sp8_S_contig10804.1188.1 vs. uniprot
Match: A0A6H5KPF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.830e-10
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  223 APPAALGRSLDSFPSASDATIMFLHVFKCAGTSLREVFMALAEEKGWSRAVVEECTR 393
            AP  A  R L SF S + +T +FLHVFKCAGTSLREVFMA A+  GW+ AV+  C++
Sbjct:   72 APLVANARELASFSSPAISTTLFLHVFKCAGTSLREVFMAFAKTNGWTGAVIAGCSK 128
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BLAST of mRNA_Ecto-sp8_S_contig10804.1188.1 vs. uniprot
Match: A0A6H5KCZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 6.190e-8
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  241 GRSLDSFPSASDATIMFLHVFKCAGTSLREVFMALAEEKGWSRAVVEEC 387
            G  L SFPS S++TI+FLHVFKCAGT+LREV    A+ +G + A+VE C
Sbjct:   90 GPELSSFPSVSNSTILFLHVFKCAGTTLREVLTTWAKLEGLNGAIVEYC 138
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BLAST of mRNA_Ecto-sp8_S_contig10804.1188.1 vs. uniprot
Match: A0A6H5JGQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.650e-6
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  247 SLDSFPSASDATIMFLHVFKCAGTSLREVFMALAEEKGWSRAVVEEC 387
            ++D FP   D+T+MFLHVFKCAG++LR++F+  A+ +G S A+V  C
Sbjct:  142 AVDRFPPLEDSTVMFLHVFKCAGSTLRQMFVDWAKAEGASGAIVTSC 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10804.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LIP3_ECTSI2.380e-8895.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPF0_9PHAE5.830e-1057.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCZ6_9PHAE6.190e-859.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGQ3_9PHAE2.650e-651.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10804contigEcto-sp8_S_contig10804:5552..6389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size435
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004620.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143173.8989613-CDS-Ecto-sp8_S_contig10804:5551..58571681143173.8989613-CDS-Ecto-sp8_S_contig10804:5551..5857Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10804 5552..5857 +
1681143173.9069595-CDS-Ecto-sp8_S_contig10804:6260..63891681143173.9069595-CDS-Ecto-sp8_S_contig10804:6260..6389Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10804 6261..6389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10804.1188.1prot_Ecto-sp8_S_contig10804.1188.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10804 5552..6389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10804.1188.1

>prot_Ecto-sp8_S_contig10804.1188.1 ID=prot_Ecto-sp8_S_contig10804.1188.1|Name=mRNA_Ecto-sp8_S_contig10804.1188.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=145bp
MGQEPKITGALSLLVLLVLLVCYSRVDLFATASSGHLRTSDDPRVSSREA
YGRRDGDQGWQRAAEEKEGLAAARAPPAALGRSLDSFPSASDATIMFLHV
FKCAGTSLREVFMALAEEKGWSRAVVEECTRRRSPRRLGAGPALT
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mRNA from alignment at Ecto-sp8_S_contig10804:5552..6389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10804.1188.1 ID=mRNA_Ecto-sp8_S_contig10804.1188.1|Name=mRNA_Ecto-sp8_S_contig10804.1188.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=838bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10804:5552..6389+ (Ectocarpus species8 EcLAC_412)
ATGGGCCAAGAACCCAAGATCACGGGCGCCCTCTCCCTGTTGGTACTACT
CGTGCTGCTCGTGTGCTACAGCCGAGTGGATCTCTTCGCAACAGCGTCAA
GCGGTCACCTCCGGACGTCGGACGACCCCCGGGTATCATCACGGGAAGCC
TACGGCCGGCGCGACGGAGACCAGGGATGGCAACGAGCAGCAGAAGAGAA
GGAAGGGTTGGCGGCGGCACGGGCTCCGCCGGCGGCGCTGGGAAGGAGCC
TTGATTCATTCCCCAGCGCGTCTGACGCGACCATCATGTTCCTTCATGTC
TTCAAGGTGATGAACCGCTAGGGCACCGTTTATCTGTACAGTTCTGCTCG
TGCAGTGTTCCGATACTAGTTGGCTGTGAGCCCCAGGTGTTCCGCAGCTA
AACATATTAATGGGTTTTGATACTTCATGCACGCTGGGCGAAAGTCACTG
GCAACGTTTTCCTGGGCAGATTTTCTTGTATTTCCTGACTTTCCTACAAA
ATAGTGATGGCGTTGTTCGTCGCCATCTGGAACACTGTTCATGGCACCCC
CCTGGTGCGGGACTTGCCATATACTTCATGGTAGCCCACATGCCGCCGGC
AAATCGTGAGCATGCCGACTCGCTAAAAGTAGCTGATGACACCTTGTGGC
CGTTCGCCCCCGGGTTGTGGTTCTTCATACATACGTGGACGGCGACCCTC
ATGAAACAGTGCGCCGGGACGAGCCTTCGAGAGGTGTTCATGGCTCTGGC
GGAGGAGAAAGGATGGAGCCGCGCCGTAGTCGAGGAATGCACTCGACGTA
GATCACCACGGCGGCTGGGCGCCGGGCCTGCTCTGACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10804:5552..6389+

>mRNA_Ecto-sp8_S_contig10804.1188.1 ID=mRNA_Ecto-sp8_S_contig10804.1188.1|Name=mRNA_Ecto-sp8_S_contig10804.1188.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10804:5552..6389+ (Ectocarpus species8 EcLAC_412)
ATGGGCCAAGAACCCAAGATCACGGGCGCCCTCTCCCTGTTGGTACTACT
CGTGCTGCTCGTGTGCTACAGCCGAGTGGATCTCTTCGCAACAGCGTCAA
GCGGTCACCTCCGGACGTCGGACGACCCCCGGGTATCATCACGGGAAGCC
TACGGCCGGCGCGACGGAGACCAGGGATGGCAACGAGCAGCAGAAGAGAA
GGAAGGGTTGGCGGCGGCACGGGCTCCGCCGGCGGCGCTGGGAAGGAGCC
TTGATTCATTCCCCAGCGCGTCTGACGCGACCATCATGTTCCTTCATGTC
TTCAAGTGCGCCGGGACGAGCCTTCGAGAGGTGTTCATGGCTCTGGCGGA
GGAGAAAGGATGGAGCCGCGCCGTAGTCGAGGAATGCACTCGACGTAGAT
CACCACGGCGGCTGGGCGCCGGGCCTGCTCTGACG
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