mRNA_Ecto-sp8_S_contig108.1182.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig108.1182.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI) HSP 1 Score: 504 bits (1298), Expect = 5.350e-180 Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 1
Query: 1 MVYNPPVERGEDGEPIKDGGVALTHPVNPMRRGAYVEQATRATGWAVMYILGWLLMRLSCYAGLPGDCNLPDEPLEVLTVLLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLSTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGVRS 789
MVYNPPVERGEDGEPIKDGGVALTHPVNPMRRGAYVEQATRATGWAVMYILGWLLMRLSCYAGLPGDCNLPDEPLEVLTVLLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDL+TFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIG +S
Sbjct: 1 MVYNPPVERGEDGEPIKDGGVALTHPVNPMRRGAYVEQATRATGWAVMYILGWLLMRLSCYAGLPGDCNLPDEPLEVLTVLLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQS 263
BLAST of mRNA_Ecto-sp8_S_contig108.1182.1 vs. uniprot
Match: D7G1P1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P1_ECTSI) HSP 1 Score: 204 bits (519), Expect = 4.130e-61 Identity = 115/261 (44.06%), Postives = 161/261 (61.69%), Query Frame = 1
Query: 1 MVYNPPVERGEDGEPIKDGGVALTHPVNPMRRG-AYVEQATRATGWAVMYILGWLLMRLSCYAGLPGDCNLPDEPLEVLTVLLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLSTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIG 780
MV+NPPV + + + K V +T V+P R G AY+EQA RA W + +L WL RL C+ LP C+LP + LEVLT LL LLVF L QAWFCE++EERRFR L + YF ++++ L +S + + ++ + D + + ++L+ +V++ HFAEAW+ LPGA+ +SG + + E+L IY SR LI++Y +LY AF+ DG LLAWVLSL AQFKS S+ WLA+ TGVF+QG G
Sbjct: 1 MVFNPPVLKQDADDAEKP--VKVT--VSPARSGDAYIEQAKRAAAWIGLLLLCWLFQRLMCHFNLPPHCDLPSDALEVLTDLLALLVFGLTQAWFCEVLEERRFRHLTREAYFGIVIIVIGLIVSAIETTDWFQDMRFNDNSDWRDSHIVMAVVLITFVLVIVAYHFAEAWRTLPGAYYVSGNINLDIVIEENLHRIYNVSRGLIVSYALLYGAFAFEEGDGLKQHYVLLAWVLSLTAQFKSKPSIIWLALCTGVFIQGFG 257
BLAST of mRNA_Ecto-sp8_S_contig108.1182.1 vs. uniprot
Match: D8LDF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF3_ECTSI) HSP 1 Score: 169 bits (429), Expect = 1.700e-48 Identity = 102/233 (43.78%), Postives = 141/233 (60.52%), Query Frame = 1
Query: 97 GAYVEQATRATGWAVMYILGWLLMRLSCYAGLPGDCNLPDEPLEVLTVLLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESL-RNSLQEERRDL--STFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGVR 786
G Y Q RA WA +Y L W+L RL C+ GLP C+L PL+VLT L+VL FSLAQA++CEI+ + RF +L + +++ + +S L R L R E +D S + IF+ LI V+++ HFA AW LPG L+SG GV +EDL IY +SR++I+A+ IL+ +F ++ DDG+ Y+ LLAW+LSL A F +S WL V TG+FLQGIG
Sbjct: 2 GGYEGQNKRALIWAALYFLAWILQRLWCHLGLPDHCDLAMRPLDVLTDLVVLFTFSLAQAYWCEILLDDRFEELKKAPWIFGVILITPIIISALGRIGGLERWDKDNEGKDFEFSALRSTIFVFGLIAAVLLVAWHFARAWLTLPGMQLLSG-GVKVEPPKEDLHGIYSSSRIVIIAWCILFTSFIISEDDGFDYRGALLAWMLSLIAVFPHPVSYIWLGVNTGIFLQGIGAN 233
BLAST of mRNA_Ecto-sp8_S_contig108.1182.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.150e-42 Identity = 101/255 (39.61%), Postives = 140/255 (54.90%), Query Frame = 1
Query: 43 PIKDGGVALTHPVNPMRRGAYVEQATRATGWAVMYILGWLLMRLSCYAGLPGDCNLPDEPLEVLTVLLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLSTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHL----ISG-VGVPRVEVR-EDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGVRS 789
P+ G ALT M EQ +A W YI + LM SC G+P +C + ++VLT L L VF+ A+ C I+ R+ L+ K+YFP+L++ + LA S L + L + DLS + A+ IILLIL +V H+ AWK LPG L +SG V P R E+ Y+AS +I+ Y +L++AF+ +R D W Y LLAW++SL A F +ISV WL +TTGVFLQG+G S
Sbjct: 20 PVYVRGTALTSQAAAMALVWDAEQGVKAASWVGFYIFLYALMAASCEVGVPENCTRATDAMDVLTELPFLFVFA---AFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFEG-LHDPGGDLSPAEAALSIILLILVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYS 270
BLAST of mRNA_Ecto-sp8_S_contig108.1182.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 3.940e-20 Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 424 DLSTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHL----ISG-VGVPRVEVR-EDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGVRS 789
+LS + A+ IILL+L +V H+ AWK LPG L +SG V P R E+ Y+AS +I+ Y +L++AF+ +R D W Y LLAW++SL A F +ISV WL +TTGVFLQG+G S
Sbjct: 15 ELSPAEAALSIILLVLVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYS 142 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig108.1182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig108.1182.1 >prot_Ecto-sp8_S_contig108.1182.1 ID=prot_Ecto-sp8_S_contig108.1182.1|Name=mRNA_Ecto-sp8_S_contig108.1182.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=263bp MVYNPPVERGEDGEPIKDGGVALTHPVNPMRRGAYVEQATRATGWAVMYIback to top mRNA from alignment at Ecto-sp8_S_contig108:5489..10308- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig108.1182.1 ID=mRNA_Ecto-sp8_S_contig108.1182.1|Name=mRNA_Ecto-sp8_S_contig108.1182.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4820bp|location=Sequence derived from alignment at Ecto-sp8_S_contig108:5489..10308- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig108:5489..10308- >mRNA_Ecto-sp8_S_contig108.1182.1 ID=mRNA_Ecto-sp8_S_contig108.1182.1|Name=mRNA_Ecto-sp8_S_contig108.1182.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp8_S_contig108:5489..10308- (Ectocarpus species8 EcLAC_412)back to top |