mRNA_Ecto-sp8_S_contig10777.1157.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10777.1157.1
Unique NamemRNA_Ecto-sp8_S_contig10777.1157.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10777.1157.1 vs. uniprot
Match: D8LE10_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE10_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.180e-18
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 3 
Query:   15 SDMMEEVLGNPEKMEQARQAILENPTLKQAMTQLPGFADMIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAADVDDLDDE 272
            SDMMEEVLGNPEKMEQARQAIL+NPTLKQAMTQLPGFADMID XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAADVDDLDDE
Sbjct:  164 SDMMEEVLGNPEKMEQARQAILDNPTLKQAMTQLPGFADMIDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAADVDDLDDE 249
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BLAST of mRNA_Ecto-sp8_S_contig10777.1157.1 vs. uniprot
Match: A0A836CH29_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH29_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.910e-8
Identity = 29/46 (63.04%), Postives = 41/46 (89.13%), Query Frame = 3 
Query:    3 EMMNSDMMEEVLGNPEKMEQARQAILENPTLKQAMTQLPGFADMID 140
            E++NS MM+E  G+PEK+E++R+AILENP LKQAM QLPGF++M++
Sbjct:  154 EVLNSPMMDEFFGSPEKIEESRKAILENPMLKQAMAQLPGFSEMLE 199
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10777.1157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE10_ECTSI9.180e-1897.67Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A836CH29_9STRA5.910e-863.04Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10777contigEcto-sp8_S_contig10777:748..2973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score93.6
Seed ortholog evalue5.1e-17
Seed eggNOG ortholog2880.D8LE10
Model size1246
KEGG koko:K04523
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0010@2759
Cds size270
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143171.6422708-UTR-Ecto-sp8_S_contig10777:747..17181681143171.6422708-UTR-Ecto-sp8_S_contig10777:747..1718Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10777 748..1718 -
1681143171.6690907-UTR-Ecto-sp8_S_contig10777:2968..29731681143171.6690907-UTR-Ecto-sp8_S_contig10777:2968..2973Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10777 2969..2973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143171.6536262-CDS-Ecto-sp8_S_contig10777:1718..18591681143171.6536262-CDS-Ecto-sp8_S_contig10777:1718..1859Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10777 1719..1859 -
1681143171.6611981-CDS-Ecto-sp8_S_contig10777:2839..29681681143171.6611981-CDS-Ecto-sp8_S_contig10777:2839..2968Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10777 2840..2968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10777.1157.1prot_Ecto-sp8_S_contig10777.1157.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10777 1719..2968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10777.1157.1

>prot_Ecto-sp8_S_contig10777.1157.1 ID=prot_Ecto-sp8_S_contig10777.1157.1|Name=mRNA_Ecto-sp8_S_contig10777.1157.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=90bp
MMNSDMMEEVLGNPEKMEQARQAILENPTLKQAMTQLPGFADMIDSPEKW
RENMEMALEMFKAQKAMMQQEGAGDEIDGAADVDDLDDE*
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mRNA from alignment at Ecto-sp8_S_contig10777:748..2973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10777.1157.1 ID=mRNA_Ecto-sp8_S_contig10777.1157.1|Name=mRNA_Ecto-sp8_S_contig10777.1157.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2226bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10777:748..2973- (Ectocarpus species8 EcLAC_412)
AGGAGATGATGAACTCAGACATGATGGAGGAAGTGCTGGGCAACCCAGAG
AAGATGGAGCAGGCAAGGCAAGCCATCCTGGAAAACCCGACCCTCAAGCA
GGCCATGACGCAATTGCCGGGCTTCGCCGACATGGTGAGTGTAATTAGGT
TACACAGAAGACTGACAGCAGTGGGGGCGGGGCCCCGCCGACATAGCGAG
TGACCGAAGGTCAGGAGCGTGAAGGAGGGGAGAGGGGCGGGGGGAGAGGT
TGTCGGTTTGGAGGGAAAATCTCGTGGAACCACGGGGAGAGGAGACCGCT
TTGGGAGAAGGGGGCAACAGGTGTATTGTGTGGAGGGATGATTTGGGAGT
GTGATTATCACGCACGTGTGAGACTCGATCCATGAGCTTGTATGATGCGT
GTGTACCACCAATTTTTTGCCTGACTGGGGGGCATTGCGCGATGAGAGAT
TGCGTGCGTGATGTTTGGCCTCGACGCGAGAAGAGTACCATGGTGCAGAT
AGTTGGTGAGGCGTGGCCAGTTATAGCTTCGGTACCTGAGAATGGGCGCC
GAAGCTGCCGTGGTATGGTTATCTTTCGCCCCACCCTCGCTATTACCCGT
GTTTTTTTTTGTCTTGTCCTTGGCTGTTGCCCACCGGCCGTCCTGTGAGC
GTCTTTTGGGATTTGACCAGCTACCCCGCGTGCAGCACAGCAGAAGTCAG
GGTCGATTTTTCGCAGCGCAAGAAAACGCGCACGTTTGTCATGCCCTGTT
TGGAACCCCCACTCCAAAACCTTGGTAATGTCATGATACCGGTAGCGGCT
GCTGGTAGCAGCAGCCCAAACCCAAAGAGGCGGCAAGAACAACCTGGCAA
ATTATGAGTTTCTGAAGCGGGGGTATTTAGATAGGCTCTGCACTGCTGTG
TACATCACAGTACACAACCGCTTTTGGGGGACCACCTTTCTCTCTCTTTG
GCTCTCTCCCTCTCTTCACACACACACTATATATTGTCTGTGTGCCCTAC
CGTTTTGTGTTTGTCATTTGTATATCCGAAAAGTTGTGCTGTGATGGCTT
ATCGCCCCTTTTGTCTCTCATGAACACCTACCTCCCTTGCCCCTTTTCAC
TTTTGTTTATAAAGATCGATTCTCCGGAGAAGTGGCGGGAGAACATGGAG
ATGGCGTTGGAGATGTTCAAGGCCCAGAAGGCCATGATGCAGCAAGAGGG
GGCAGGGGACGAAATCGACGGTGCCGCGGATGTCGACGACCTAGATGACG
AGTAGAGACTTGGTCAAGTCAAACGAGGGGTGTAGGGATGTCTTTTATCT
GTCTCTCACCTTTTTTTGTGTGTTTTAGTGTTCTTGTGAACGCGGATGCG
CAAAATTGTGGCGATGAATGACAAGGTATCCCAAAGAGACGGTATTTAGT
TACATCCCTCTACGCGAAGACTTTTGGCTGTTGGTTGTTTTCTCCGGCAT
GGCGATGAATCCGAGAGCGCACAACAGCAGTCTCATTTGATTTTGTGTTT
GTTTCCATTGCTTCTGTCCTTTTGACACGCGGATGTATGGGGATGGCGGT
GTTGGGTGCCGGACAATACTAGGGGTGTCTTGTTCCCTAGACTCTTCTTT
TTACTGCTCTCTCTCATCGTTCAGCTAGGAGACGGTGACGAAGGCGAGTA
GCGCTTTCGAAATCTTTTACGATAGTACCACCAGCGGGTGTGTTCGTTGT
GGAAGCGAGTAAGGACTGTTGAGTGACGGCGGGTGGCTGTGACAGCATGC
TACCCGCGCCTCATTCTATGTAGAGGCTCGGGGTGTAGACTGGTGGCTGG
TGATTCATTTTTTTTTTTTCGTTTGACGACACACGACGCTCGCGAAGGAG
AAGGGGTAGAAACAGAAAGAAGGCGGTTTTTTCCCACACGGTCGTTACAT
TTTTATTTTCGTTGGGCGACACGCGTCTGAACAGGGGGAGGGACTACATG
CACGGAAGAAAATAAATGTTCCTCCATCTCTGCTCTTGTGTCCCTCCCCC
CTTGTGCTTTTCTGGGCGCGGCCGGTGCTGGAACACCACGCACCGCCGAC
AGACAGATAGGCTGACGGGGACTAAGAACTTGCGCGTGCAATGAGCCGAC
AGAGTACCAGCAGATAAACGCAGTCGCACGTAGCCATGGACGAAAGTCGC
CGCTGGGTTGTTGGCGCGGTGGCTTAGGCTGCCCGGTCACACGCTGCCCC
GTGATGCGTATAAATTTAATGTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10777:748..2973-

>mRNA_Ecto-sp8_S_contig10777.1157.1 ID=mRNA_Ecto-sp8_S_contig10777.1157.1|Name=mRNA_Ecto-sp8_S_contig10777.1157.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10777:748..2973- (Ectocarpus species8 EcLAC_412)
ATGATGAACTCAGACATGATGGAGGAAGTGCTGGGCAACCCAGAGAAGAT
GGAGCAGGCAAGGCAAGCCATCCTGGAAAACCCGACCCTCAAGCAGGCCA
TGACGCAATTGCCGGGCTTCGCCGACATGATCGATTCTCCGGAGAAGTGG
CGGGAGAACATGGAGATGGCGTTGGAGATGTTCAAGGCCCAGAAGGCCAT
GATGCAGCAAGAGGGGGCAGGGGACGAAATCGACGGTGCCGCGGATGTCG
ACGACCTAGATGACGAGTAG
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