mRNA_Ecto-sp8_S_contig10770.1153.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10770.1153.1
Unique NamemRNA_Ecto-sp8_S_contig10770.1153.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10770.1153.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.410e-46
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:    1 MEIIQATAGEEGSTGWQALFGSGLDATGDGFSDTSSQASMGSIGTRASARVGVGRGKTSPRVAMTPSVASSVRGKEPPKKTDSRPVSMLKPK 276
            MEIIQATAGEEGSTGWQALFGSGLDATGDGFSDTSSQASMGSIGTRASARVGVGRGKTSPRVAMTPS ASSVRGKEPPKKTDSRPVSMLKPK
Sbjct: 1792 MEIIQATAGEEGSTGWQALFGSGLDATGDGFSDTSSQASMGSIGTRASARVGVGRGKTSPRVAMTPSAASSVRGKEPPKKTDSRPVSMLKPK 1883
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BLAST of mRNA_Ecto-sp8_S_contig10770.1153.1 vs. uniprot
Match: A0A6H5K5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5J8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.390e-6
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:    1 MEIIQATAGEEGSTGWQALFGSGLDATGDGFSDTSSQASMGSIGTRASARVGVGRGKTSPRVAMTPSVAS--SVRGKEPPKKTDSRPVSMLKPK 276
            MEI++ATAG++GS+ W ALFGS +DA GD  SD++S  SM      A  R    RG   P  A   SVA+  SVR ++       RPVS LKPK
Sbjct:  293 MEILRATAGDKGSSSWDALFGSAMDA-GDDVSDSASMYSMERSVMSARQR----RGPGVPTAAAVGSVAAAESVRNED-----HHRPVSSLKPK 376
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10770.1153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6N9_ECTSI1.410e-4698.91Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K5J8_9PHAE6.390e-646.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10770contigEcto-sp8_S_contig10770:5554..6343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score169.9
Seed ortholog evalue5.7e-40
Seed eggNOG ortholog2880.D7G6N9
Model size276
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Cds size276
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143171.4592345-CDS-Ecto-sp8_S_contig10770:5553..55971681143171.4592345-CDS-Ecto-sp8_S_contig10770:5553..5597Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10770 5554..5597 +
1681143171.467751-CDS-Ecto-sp8_S_contig10770:6111..63431681143171.467751-CDS-Ecto-sp8_S_contig10770:6111..6343Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10770 6112..6343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10770.1153.1prot_Ecto-sp8_S_contig10770.1153.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10770 5554..6343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10770.1153.1

>prot_Ecto-sp8_S_contig10770.1153.1 ID=prot_Ecto-sp8_S_contig10770.1153.1|Name=mRNA_Ecto-sp8_S_contig10770.1153.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=92bp
MEIIQATAGEEGSTGWQALFGSGLDATGDGFSDTSSQASMGSIGTRASAR
VGVGRGKTSPRVAMTPSVASSVRGKEPPKKTDSRPVSMLKPK
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mRNA from alignment at Ecto-sp8_S_contig10770:5554..6343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10770.1153.1 ID=mRNA_Ecto-sp8_S_contig10770.1153.1|Name=mRNA_Ecto-sp8_S_contig10770.1153.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=790bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10770:5554..6343+ (Ectocarpus species8 EcLAC_412)
ATGGAGATCATTCAGGCCACGGCGGGCGAGGAGGGGAGCACGGGGTAAGA
CTTAGGGGAGACTAATGGGGAAGACAAGACACGGCTAGGACTTTACCTGG
AGACTTGTGACGAAATTCAAGACTCAGGCCGTAAACGAACTCAGGGCTAA
GGACTGAGACTAGAGGAGGGTCAATTGTTGGGACCAAAAGACAAGACGGA
CGTAAGGGTGAATGCATCCTGTACCACACTCTAGGTTGTGACAGGACGAT
ACTGGCTCATCGTGGACGATATACTTTTTGTTGTGGTCCATTCCATTTTA
AGGAAAGACGTTGCCAATGCCCCCTCCCCCCCCCACGACGAAACTCGTCC
CATGCATGTGAGAGCACAGATATGACACAAGAATTTGGCCGAAGCACGTA
CCGCAAGAATCAAGAGTCAACATCAAGTTTTATTTCTCAACAGCTTCCGA
GAGACAACCCCGCAAAGCATTTCACGCATCGATTCGCCTCGCCGCCGTTC
CGCTCTGTTTTCTGTCCCCCATTTTGTTTTTTTTCATTCTGTCCCCCCCC
TATAAAAGATGGCAAGCGTTGTTCGGGTCGGGGCTGGACGCGACAGGGGA
CGGTTTCTCCGATACGTCTTCCCAAGCGAGCATGGGCAGCATCGGCACTC
GAGCATCGGCCAGGGTGGGAGTGGGCAGGGGCAAGACCAGCCCCCGCGTG
GCGATGACCCCGTCCGTAGCGTCCTCCGTGAGAGGCAAGGAGCCGCCCAA
GAAGACAGATAGTCGACCGGTGTCGATGCTCAAGCCTAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10770:5554..6343+

>mRNA_Ecto-sp8_S_contig10770.1153.1 ID=mRNA_Ecto-sp8_S_contig10770.1153.1|Name=mRNA_Ecto-sp8_S_contig10770.1153.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10770:5554..6343+ (Ectocarpus species8 EcLAC_412)
ATGGAGATCATTCAGGCCACGGCGGGCGAGGAGGGGAGCACGGGATGGCA
AGCGTTGTTCGGGTCGGGGCTGGACGCGACAGGGGACGGTTTCTCCGATA
CGTCTTCCCAAGCGAGCATGGGCAGCATCGGCACTCGAGCATCGGCCAGG
GTGGGAGTGGGCAGGGGCAAGACCAGCCCCCGCGTGGCGATGACCCCGTC
CGTAGCGTCCTCCGTGAGAGGCAAGGAGCCGCCCAAGAAGACAGATAGTC
GACCGGTGTCGATGCTCAAGCCTAAG
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