mRNA_Ecto-sp8_S_contig10768.1150.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10768.1150.1
Unique NamemRNA_Ecto-sp8_S_contig10768.1150.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10768.1150.1 vs. uniprot
Match: A0A6H5JDT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT1_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.150e-23
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 RDQVAAIRWLLGQGANPNHVDKAGYTPLAWACRSGLFRAVVALVEAGAD 147
            RDQVAAI+WLLGQGANPNHVDKAGYTPLAWACRSGLF AVVALVEAGAD
Sbjct:  257 RDQVAAIKWLLGQGANPNHVDKAGYTPLAWACRSGLFPAVVALVEAGAD 305
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10768.1150.1 vs. uniprot
Match: D8LHY1_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY1_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.600e-21
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 RDQVAAIRWLLGQGANPNHVDKAGYTPLAWACRSGLFRAVVALVEAGAD 147
            R QVAAI+WLLGQGANPNHVDKAGY  LAWACRSG+F AVVALVEAGAD
Sbjct:   84 RQQVAAIKWLLGQGANPNHVDKAGYXXLAWACRSGIFPAVVALVEAGAD 132
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10768.1150.1 vs. uniprot
Match: A0A6C0C7J5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0C7J5_9ZZZZ)

HSP 1 Score: 48.1 bits (113), Expect = 4.670e-5
Identity = 20/48 (41.67%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 DQVAAIRWLLGQGANPNHVDKAGYTPLAWACRSGLFRAVVALVEAGAD 147
            D+    + LLG GA+PN++DKAG +PL +AC++ + + +  L+  GAD
Sbjct:   14 DRYDITKILLGSGADPNYIDKAGKSPLLYACKNKMVQQIKLLISHGAD 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10768.1150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDT1_9PHAE1.150e-2395.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHY1_ECTSI2.600e-2187.76Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6C0C7J5_9ZZZZ4.670e-541.67Uncharacterized protein n=1 Tax=viral metagenome T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10768contigEcto-sp8_S_contig10768:16..162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score92.4
Seed ortholog evalue6.2e-17
Seed eggNOG ortholog2880.D8LHY1
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size147
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143171.182925-CDS-Ecto-sp8_S_contig10768:15..1621681143171.182925-CDS-Ecto-sp8_S_contig10768:15..162Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10768 16..162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10768.1150.1prot_Ecto-sp8_S_contig10768.1150.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10768 16..162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10768.1150.1

>prot_Ecto-sp8_S_contig10768.1150.1 ID=prot_Ecto-sp8_S_contig10768.1150.1|Name=mRNA_Ecto-sp8_S_contig10768.1150.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=49bp
RDQVAAIRWLLGQGANPNHVDKAGYTPLAWACRSGLFRAVVALVEAGAD
back to top

mRNA from alignment at Ecto-sp8_S_contig10768:16..162+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10768.1150.1 ID=mRNA_Ecto-sp8_S_contig10768.1150.1|Name=mRNA_Ecto-sp8_S_contig10768.1150.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10768:16..162+ (Ectocarpus species8 EcLAC_412)
CGCGATCAGGTAGCTGCGATAAGGTGGCTGCTGGGTCAAGGGGCGAACCC
CAACCACGTCGACAAGGCTGGCTACACCCCGCTGGCCTGGGCCTGCCGAA
GCGGGTTGTTCCGGGCTGTGGTGGCGCTGGTGGAAGCAGGCGCGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10768:16..162+

>mRNA_Ecto-sp8_S_contig10768.1150.1 ID=mRNA_Ecto-sp8_S_contig10768.1150.1|Name=mRNA_Ecto-sp8_S_contig10768.1150.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10768:16..162+ (Ectocarpus species8 EcLAC_412)
CGCGATCAGGTAGCTGCGATAAGGTGGCTGCTGGGTCAAGGGGCGAACCC
CAACCACGTCGACAAGGCTGGCTACACCCCGCTGGCCTGGGCCTGCCGAA
GCGGGTTGTTCCGGGCTGTGGTGGCGCTGGTGGAAGCAGGCGCGGAC
back to top