mRNA_Ecto-sp8_S_contig10764.1146.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10764.1146.1
Unique NamemRNA_Ecto-sp8_S_contig10764.1146.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10764.1146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10764contigEcto-sp8_S_contig10764:3963..4770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size781
Hectar predicted targeting categoryother localisation
Exons2
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143170.766142-UTR-Ecto-sp8_S_contig10764:3962..42201681143170.766142-UTR-Ecto-sp8_S_contig10764:3962..4220Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10764 3963..4220 -
1681143170.8192487-UTR-Ecto-sp8_S_contig10764:4751..47701681143170.8192487-UTR-Ecto-sp8_S_contig10764:4751..4770Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10764 4752..4770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143170.7870576-CDS-Ecto-sp8_S_contig10764:4220..46381681143170.7870576-CDS-Ecto-sp8_S_contig10764:4220..4638Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10764 4221..4638 -
1681143170.8032095-CDS-Ecto-sp8_S_contig10764:4665..47511681143170.8032095-CDS-Ecto-sp8_S_contig10764:4665..4751Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10764 4666..4751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10764.1146.1prot_Ecto-sp8_S_contig10764.1146.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10764 4221..4751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10764.1146.1

>prot_Ecto-sp8_S_contig10764.1146.1 ID=prot_Ecto-sp8_S_contig10764.1146.1|Name=mRNA_Ecto-sp8_S_contig10764.1146.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=168bp
MMFSSSTCVHTNPRLTTQRCMEIKATNNSERERAPTLRYVLRWTETLHHQ
GHSMNHNETKPPPIVDRPSFDTGASLVGGKFDGIIMCMKTRADMTKQKIR
KPLNSLSLSLRQVNFRALTSSSVLPCFMQSSCNTDTYVLWSPRQARQRPS
KTTATNNKQQPCHPNNH*
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mRNA from alignment at Ecto-sp8_S_contig10764:3963..4770-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10764.1146.1 ID=mRNA_Ecto-sp8_S_contig10764.1146.1|Name=mRNA_Ecto-sp8_S_contig10764.1146.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=808bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10764:3963..4770- (Ectocarpus species8 EcLAC_412)
GGACTTGATATAAATTATAATGATGTTTTCGTCGAGCACCTGTGTACATA
CCAATCCCAGACTCACTACGCAAAGATGCATGGAAATAAAAGCCACCAAC
AACTCGCAGAACAACAATCAGTCATGAGGGAGCGAGCGAGAGCGGGCTCC
TACTCTACGGTACGTACTGCGCTGGACCGAGACACTACATCATCAGGGAC
ACAGTATGAACCACAACGAAACGAAACCGCCGCCAATCGTCGACAGACCG
TCCTTTGACACGGGCGCGTCACTCGTCGGTGGTAAGTTCGACGGGATTAT
CATGTGTATGAAAACGCGTGCAGACATGACGAAGCAGAAAATACGCAAAC
CCCTAAACTCTCTCTCTCTCTCTCTCCGTCAAGTTAATTTCAGAGCTCTA
ACGTCGTCGTCGGTCCTTCCTTGTTTCATGCAGTCATCATGCAACACAGA
CACATACGTACTCTGGTCTCCTCGCCAAGCAAGACAACGGCCAAGCAAGA
CAACGGCTACCAACAATAAACAACAGCCCTGCCACCCAAACAATCATTAA
TCCTCCCATGAAGCACATACCATACATGCACAAACACACACCGCGGGCTT
GAAACCGTCTTGAGTTTCCCTTCCCTCTAAGACCTGACGTCGTGTGTTTG
GTTGCATCCATCACCACCATCCTACCTAACGTATTATTTTTTTTGAACCA
AAGACCACGCGCGTCCACGACCGCGACAGAGCGGCAAAAATAGAATATTA
TGAAACATCCAACCAAGAGACGAAACAGAACAAGGGAAAAAAAAAAAACA
GCCCTCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10764:3963..4770-

>mRNA_Ecto-sp8_S_contig10764.1146.1 ID=mRNA_Ecto-sp8_S_contig10764.1146.1|Name=mRNA_Ecto-sp8_S_contig10764.1146.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10764:3963..4770- (Ectocarpus species8 EcLAC_412)
ATGATGTTTTCGTCGAGCACCTGTGTACATACCAATCCCAGACTCACTAC
GCAAAGATGCATGGAAATAAAAGCCACCAACAACTCCGAGCGAGAGCGGG
CTCCTACTCTACGGTACGTACTGCGCTGGACCGAGACACTACATCATCAG
GGACACAGTATGAACCACAACGAAACGAAACCGCCGCCAATCGTCGACAG
ACCGTCCTTTGACACGGGCGCGTCACTCGTCGGTGGTAAGTTCGACGGGA
TTATCATGTGTATGAAAACGCGTGCAGACATGACGAAGCAGAAAATACGC
AAACCCCTAAACTCTCTCTCTCTCTCTCTCCGTCAAGTTAATTTCAGAGC
TCTAACGTCGTCGTCGGTCCTTCCTTGTTTCATGCAGTCATCATGCAACA
CAGACACATACGTACTCTGGTCTCCTCGCCAAGCAAGACAACGGCCAAGC
AAGACAACGGCTACCAACAATAAACAACAGCCCTGCCACCCAAACAATCA
TTAA
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