mRNA_Ecto-sp8_S_contig10761.1144.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10761.1144.1
Unique NamemRNA_Ecto-sp8_S_contig10761.1144.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10761.1144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10761contigEcto-sp8_S_contig10761:1086..3989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size346
Hectar predicted targeting categoryother localisation
Exons3
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143170.7126696-CDS-Ecto-sp8_S_contig10761:1086..12071681143170.7126696-CDS-Ecto-sp8_S_contig10761:1086..1207Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10761 1087..1207 -
1681143170.726234-CDS-Ecto-sp8_S_contig10761:2213..23941681143170.726234-CDS-Ecto-sp8_S_contig10761:2213..2394Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10761 2214..2394 -
1681143170.7358139-CDS-Ecto-sp8_S_contig10761:3946..39891681143170.7358139-CDS-Ecto-sp8_S_contig10761:3946..3989Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10761 3947..3989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10761.1144.1prot_Ecto-sp8_S_contig10761.1144.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10761 1087..3989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10761.1144.1

>prot_Ecto-sp8_S_contig10761.1144.1 ID=prot_Ecto-sp8_S_contig10761.1144.1|Name=mRNA_Ecto-sp8_S_contig10761.1144.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=115bp
LLLASSAVAVGHHGDHEGGGTTSATVSSSSTGWSVDLLPSPTLDPVGCGH
PRERLRDGSYLCDPDGLLTTAGAQRAEEELEKISSLQTPCGKAVKGDEQQ
QQQQQQQQLMGDIEG
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mRNA from alignment at Ecto-sp8_S_contig10761:1086..3989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10761.1144.1 ID=mRNA_Ecto-sp8_S_contig10761.1144.1|Name=mRNA_Ecto-sp8_S_contig10761.1144.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2904bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10761:1086..3989- (Ectocarpus species8 EcLAC_412)
CTGCTCTTGGCGTCGTCCGCTGTAGCGGTTGGTCACCACGGAGGTATGTC
TTCGTAGTTTGTTTCGCCGCGGCCTAGTTTAGAAAAGCAGTCAAGAGCAA
TTTAGCTGCCCTGCTCTGCTGTACAGCAGCAGTGTACAGCACAACAGCGA
TATTTACATGACACGGTTATTCAACCTGAGCAACTCCACCATAACCATTA
TCTCGCCTTGGGTGTCGGATTAGCTTGCAGGTGGCGGTGACCTTTCATCT
CAAGAATAATGTACAGGATCCCATTCTGCTTCACGCTCACAATCGGCAGC
TGACAGGTGACACGTACTTGATGTTTCTTGTTCAAAACAGGAGAGTTTCG
GGTGTCGTCAACGCTGCTGCTGTTGGCGCTCCACCAAAGTGCACGCACTC
AACACATGTAAAGAAGAGCAGCCCCAGCACAGTATGCATGTAGAACAGGC
TTGTGTTGATGACTTAGCCCAGGGCGGACGACCTTTCACAGAATACCTCG
ACTGCTACCAATATGTGAACTCTTTGCACGTATATACACTCGTATCGTAA
CAGCAAGGAAGCTCCAACGAGAGCAGGGAGAGGGAGTGAGGTCGATTCAC
TCTCTCGTTTGGAGTCTGTAGCACCAACCAAACCCTCCGCCCTACACGTT
GATCACAATCACCAGGCCCATGTAGCTGTCGTTGTTTCTACTCCGCATCC
CGTGCCCATTTTCACATTCCGACGCATACCTTTTGCTCCAACAAAAGATG
TAGCTGGGACGCTGTAGCTGGCGCATCGTAGTGCCACTTGTCATCTCATA
ATACAGTAGTACTGCTGTATCTCCTAAATTTTCTCTTTGAGAATTTGTGG
TTGCTCTCAGAGATGTCGCCGTCAGATCATCTTGAAGAGCGATGCCAGAG
AGAGAAAGAGAAAGAGATTGGGTTTTCTACCAAGCCCAAAGAGAGACCAA
CAGAATTCGTACTTGCTGGTCTCCTCGACTGAGCTACGCGTATATTGCTG
TCTAGAAAGTAGGTGGTACCCTGGGTGTCTGATCTTTTAAATGCTGTATG
CATATGCACAACAAGTTTGAGTCATCCCCGTGGCAGTCAACCCACCATTC
GACAGATTTTCATCCAGCAGCTGTAGCTTGACTACTCCACAACCAAGAGG
ACGTCAATGCCGAAATGGGTATGCGTGTAGGTAGTGTTGGAAAGATCGAG
GGTTGAAAGCCGGGGTAGGGTGTGTGCGATCACTCGTACCTTGTCAGGTT
TGTTGTTGTAGTCGCATTGTGTGAACGAGGAAGGTAGGAGCACATGCAAG
ACACGCATGATTCCTCCCCACTCGCGTGCCTTACGAACTTATCGCCGCGT
GTAGGGGTCGACGTTCGATGAAATGCTCAGGGAGGGCAGTTTGCCAGAAG
AGACTAATGCCCACTATTTAGACGGTAGTTTTAACAGCTCTTCGGGAAGC
AGGTATGCATCCCATCACTCACCATCACTTCCAAATCAAGTTTTATTCTC
CTCGAGAGAGAGTGGCCCGCTCCCTGCCTTCGCTGCCTCGCGACAACGAT
AACAACGGTTCTGTGCCTACCGGACCTACCCCACCATTCGACCAGATCAT
GAGGGCGGCGGGACAACAAGCGCCACCGTCAGCAGCAGCAGCACCGGCTG
GTCGGTAGACCTGTTGCCGTCTCCGACGCTTGACCCCGTGGGCTGCGGCC
ATCCGAGGGAGAGGCTACGGGACGGGTCCTACCTGTGTGATCCGGATGGC
CTGCTGACGACGGCCGGGGCACAGAGGCAAGCCAGCAGGCATTTACTACT
TTGTTTTCGTCCGCTTCGCTAATGTATTTGGCACGTTTCGCCTATCATGT
ATCTGCGTTGTTTCGCCTCTGTGTCTGGCGTGTTTGGCCAATGCATCTGA
CGTGTTTCACCAATGTGTCTGGGTCGCGGAGGCCAGCCAGCAAGCATCGT
CGTTGCTGTTCGTCCGCTTCGCTTATGTATCTGGCGTGTTTCGCACATGT
GTCTGGCGTGTCTCGCCCACGTATCTGGCGTGTTTCGCCTCTGGGTCTGG
CGTGTATGAATCTGGCGTGTTTCGCCTTTGTGCTTCGCGTGTTTCCGTTT
GTGGTGGTGGTTGTCTCGAGAGGCGCTTGCGTCTTCTGCGCCTCCCGGGC
TTTGCATATATACATACTAGTTGATAAGAGGTCAGGTCAGGGGTTCGAGT
CCCGGCGTAAGCGAGCTTTTCTTGCAAAGTGAGTTTTTCTCTCGCATCCG
CTCCTGGCCTAGTGGATAGCGCTAAATAGTTTGTGTGTACACAGAGGGAA
GAGAGTGCTGAACTCTTCTCGCATTAAAAATCGAAGGCAACGTACCGCAG
GAGGGGAGGGTAGAGAGGGGCTCTTCTGTGTGACAACGGGTTGGAGTAAA
CAGCACTAATGCTGTGAGCGCTGATTTGAAGTGAAGACAAAAAAAAATAA
AAAAAATACCATGGGGTATAACATGATATTGCAACAACTTGGTGCTGCTG
AACTTTATGGATTTAAGAGCGTGTAGGGTGAGCAGCGGTAGCACAACTGC
CCCGATGAACCCAGTTTCCCGCTTATCGTCACGGATTTTGTGCCGCGGAA
ATAGATATTTCTTGTTCGGTCTCCCCGACTGAAAAATTATTCCTCTATGC
CGTAAAGATAGGCACAGCTCCAAGTCGAGTCCTTACGCAAAGGGGATAAC
TGTCTCCCGCGTGTGTTTTGGTTCGCCCCGCGTGCTTCTGCTGGTGCTGC
TCGCGCCACGACTAAACCCGCCTCTTTCTCAGAGCGGAGGAGGAGCTGGA
AAAGATCTCCAGTCTGCAGACCCCCTGTGGTAAGGCCGTCAAAGGGGACG
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGATGGGGGACATTGAG
GGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10761:1086..3989-

>mRNA_Ecto-sp8_S_contig10761.1144.1 ID=mRNA_Ecto-sp8_S_contig10761.1144.1|Name=mRNA_Ecto-sp8_S_contig10761.1144.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10761:1086..3989- (Ectocarpus species8 EcLAC_412)
CTGCTCTTGGCGTCGTCCGCTGTAGCGGTTGGTCACCACGGAGATCATGA
GGGCGGCGGGACAACAAGCGCCACCGTCAGCAGCAGCAGCACCGGCTGGT
CGGTAGACCTGTTGCCGTCTCCGACGCTTGACCCCGTGGGCTGCGGCCAT
CCGAGGGAGAGGCTACGGGACGGGTCCTACCTGTGTGATCCGGATGGCCT
GCTGACGACGGCCGGGGCACAGAGAGCGGAGGAGGAGCTGGAAAAGATCT
CCAGTCTGCAGACCCCCTGTGGTAAGGCCGTCAAAGGGGACGAACAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCTGATGGGGGACATTGAGGGC
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