mRNA_Ecto-sp8_S_contig10760.1143.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10760.1143.1
Unique NamemRNA_Ecto-sp8_S_contig10760.1143.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10760.1143.1 vs. uniprot
Match: D7FR35_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR35_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 4.800e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:    2 TAISHNDDYLSQASLHGAALVHAITGNMAEASAGLAKMRSIVEEDWARRRGRRGRTAAATEGTSHASLVVMETLGAYLAASR 247
            TAISHNDDYLSQASLHGAALVHAITGNMAEASAGLAKMRSIVEEDWARRRGRRGRTAAATEGTSHASLVVMETLGAYLAASR
Sbjct: 2027 TAISHNDDYLSQASLHGAALVHAITGNMAEASAGLAKMRSIVEEDWARRRGRRGRTAAATEGTSHASLVVMETLGAYLAASR 2108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10760.1143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR35_ECTSI4.800e-41100.00Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10760contigEcto-sp8_S_contig10760:793..1291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size258
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143170.6482532-CDS-Ecto-sp8_S_contig10760:792..10131681143170.6482532-CDS-Ecto-sp8_S_contig10760:792..1013Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10760 793..1013 -
1681143170.6615734-CDS-Ecto-sp8_S_contig10760:1254..12911681143170.6615734-CDS-Ecto-sp8_S_contig10760:1254..1291Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10760 1255..1291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10760.1143.1prot_Ecto-sp8_S_contig10760.1143.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10760 793..1291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10760.1143.1

>prot_Ecto-sp8_S_contig10760.1143.1 ID=prot_Ecto-sp8_S_contig10760.1143.1|Name=mRNA_Ecto-sp8_S_contig10760.1143.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp
HGHLSQRRLSFPGLAARSGLGARHHGKHGGGFRRPGEDEVHRRGGLGPSK
GQEGQDGRRHGGHEPRLPGGHGNPRRLSGGIAGKA*
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mRNA from alignment at Ecto-sp8_S_contig10760:793..1291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10760.1143.1 ID=mRNA_Ecto-sp8_S_contig10760.1143.1|Name=mRNA_Ecto-sp8_S_contig10760.1143.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=499bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10760:793..1291- (Ectocarpus species8 EcLAC_412)
CACGGCCATCTCTCACAACGACGACTATCTTTCCCAGGTACAAACACGGC
ACGCTTTTTGTTTGTCCTTTCGGCACGAAAAACTGGCCGAACGCAGAATC
AACCGCAACTACGTAGTTCTCGAGTCCACCGAGTTAGTTGCAGAAGAAGG
ATTTTCGCACTAGACAGATCTGGAAATCAGAACGCAATAGAAGAGAGTGT
TTCCGTCGCGACTGCTGTGTAGCTGCCCCTACAAGGGTAACCAACCTCTC
CGCTGTCTGGTTCTCCCGCGGGAAAAAGGCCTCGCTGCACGGAGCGGCCT
TGGTGCACGCCATCACGGGAAACATGGCGGAGGCTTCCGCCGGCCTGGCG
AAGATGAGGTCCATCGTAGAGGAGGACTGGGCCCGTCGAAGGGGCAGGAG
GGGCAGGACGGCCGCCGCCACGGAGGGCACGAGCCACGCCTCCCTGGTGG
TCATGGAAACCCTCGGCGCCTATCTGGCGGCATCGCGGGTAAGGCATAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10760:793..1291-

>mRNA_Ecto-sp8_S_contig10760.1143.1 ID=mRNA_Ecto-sp8_S_contig10760.1143.1|Name=mRNA_Ecto-sp8_S_contig10760.1143.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10760:793..1291- (Ectocarpus species8 EcLAC_412)
CACGGCCATCTCTCACAACGACGACTATCTTTCCCAGGCCTCGCTGCACG
GAGCGGCCTTGGTGCACGCCATCACGGGAAACATGGCGGAGGCTTCCGCC
GGCCTGGCGAAGATGAGGTCCATCGTAGAGGAGGACTGGGCCCGTCGAAG
GGGCAGGAGGGGCAGGACGGCCGCCGCCACGGAGGGCACGAGCCACGCCT
CCCTGGTGGTCATGGAAACCCTCGGCGCCTATCTGGCGGCATCGCGGGTA
AGGCATAG
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