mRNA_Ecto-sp8_S_contig10758.1139.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10758.1139.1
Unique NamemRNA_Ecto-sp8_S_contig10758.1139.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10758.1139.1 vs. uniprot
Match: A0A7S2MQ94_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQ94_9STRA)

HSP 1 Score: 158 bits (400), Expect = 4.910e-45
Identity = 77/170 (45.29%), Postives = 100/170 (58.82%), Query Frame = 1 
Query:   31 NCGPASSSDPCCIECFGLSYCDVLNGYKVEDKYFPGEATILGSCENFEDRASRLEVFGPSK---TFRDTDACREMVIDYTCLWWGSANEMYDNRCGIEAQV-YPCRSYCVQLAKTCANNVVEWQELCRSIDCPPTDEECMPGPYSQAREATQDPDEACYLYEYHSPLNAA 528
            +CG   +  PCCI+C  L YC  +N Y +EDKY+P E  I GSC+  +DR  RLE+FGP+    TFRDTD CR +V+DY CLWW S N+ YDNRC     +  PCRSYCVQ+   CAN++ +W + C  I+C   +  C  GP         D D  C + EY S  + A
Sbjct:   48 DCGIDDNQCPCCIQCESLDYCSAINFYVMEDKYYPTENDITGSCDMLDDRIQRLEIFGPASLGYTFRDTDQCRSLVMDYICLWWASENDHYDNRCDYGEDIDRPCRSYCVQVGLVCANSL-DWLDTCYHIECASNEAGCTTGP--------DDIDYKCAIPEYISSFSGA 208
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BLAST of mRNA_Ecto-sp8_S_contig10758.1139.1 vs. uniprot
Match: A0A835Z6T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T3_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.600e-42
Identity = 92/244 (37.70%), Postives = 114/244 (46.72%), Query Frame = 1 
Query:   34 CGPASSSDPCCIECFGLSYCDVLNGYKVEDKYFPGEATILGSCENFEDRASRLEVFGPSKT-----------------------------------------------FRDTDACREMVIDYTCLWWGSANEMYDNRCGIEAQVYPCRSYCVQLAKTCANNVVEWQELCR--------------------------SIDCPPTDEECMPGPYSQAREATQDPDEACYLYEYHSPLN--AATPRG 540
            CG A +  PCC+ C GL+ C VLN Y VE+KY+PG +  +GSC NF+DR SRL VFGP KT                                               FRDT  CR+ V  YTCLWWG+ N  +DNRCG  A   PCRS+CVQ+A+ CAN+   W                                I CPP  ++C+PGP+        +PD AC+LYEY+SPL   AA  RG
Sbjct:   52 CGVAPNPVPCCVLCLGLNQCSVLNSYAVEEKYYPGSSGTVGSCTNFDDRVSRLAVFGPEKTVWXXXXXXXXXXXXXXXSCDAAQVXXXXXXXXEKTVSXXXXXXXXXXFRDTPDCRKWVYAYTCLWWGTDNAHFDNRCGSFANRPPCRSFCVQVAEVCANDP-GWNAAAXXXXXXXAAAQVXXXXXXXXXXXXXXXGIACPPIADDCVPGPFVTH---PVEPD-ACFLYEYNSPLQGGAAAVRG 290
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BLAST of mRNA_Ecto-sp8_S_contig10758.1139.1 vs. uniprot
Match: A0A7S2C5P0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C5P0_9STRA)

HSP 1 Score: 150 bits (378), Expect = 7.880e-41
Identity = 75/164 (45.73%), Postives = 95/164 (57.93%), Query Frame = 1 
Query:   31 NCGPASSSDPCCIECFG--LSYC-DVLNGYKVEDKYFPGEATILGSCENFEDRASRLEVFGPSKTFRDTDACREMVIDYTCLWWGSANEMYDNRCGIEAQVY-PCRSYCVQLAKTCANNVVEWQELCRSIDCPPTD-EECMPGPYSQAREATQDPDEACYLYEY 507
            +CG +    PCCI C    +SYC D L G  +ED+Y+P E  I GSC+N ++R   L+VFG  KTFRD D CR++V +Y CLWWGS N  Y+NRC    Q   PCR +CVQ+   CANN  +W  LC  I C   D  EC P PYS +          C +YE+
Sbjct:  121 DCGTSDEECPCCIRCLNEEMSYCHDALGGKLLEDQYYPTEKGISGSCDNLDERVGALDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANNE-DWMNLCYDIPCSAGDGPECTPAPYSTSF--------LCSVYEF 275
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BLAST of mRNA_Ecto-sp8_S_contig10758.1139.1 vs. uniprot
Match: A0A8J2WWI3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWI3_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.140e-40
Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 1 
Query:   55 DPCCIECFG-LSYCDVLNGYKVEDKYFPGEATILGSCENFEDRASRLEVFGPSKTFRDTDACREMVIDYTCLWWGS--ANEMYDNRCGIEAQVY--PCRSYCVQLAKTCANNVVEWQELCRSIDCPPTDEECMPGPYSQAREATQDPDEACYLYEYHSPLN 522
            D CC  C   L  C  + GY VEDKY+P E ++ GSC++ + R + L+VFGPSKTFRD D CR +V +Y CLWWGS   ++  +N C  +  +   PCR +CVQ+A  CAN++ ++Q LC++I CPP +E CMP P S A   T     ACY+Y Y +  N
Sbjct:  118 DICCSLCKNDLQTCWRMAGYLVEDKYYPSEQSVTGSCDDIDRRVANLDVFGPSKTFRDNDLCRRLVNEYMCLWWGSEGVDQSSENHCSSKGVILVAPCRPFCVQVAIQCANSL-DYQRLCQAIPCPPIEETCMPEPRSVAT-VTLSKTMACYVYRYSTLAN 276
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BLAST of mRNA_Ecto-sp8_S_contig10758.1139.1 vs. uniprot
Match: A0A7S2FUR6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.310e-24
Identity = 51/108 (47.22%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:  190 LEVFGPSKTFRDTDACREMVIDYTCLWWGSANEMYDNRCGIEAQVY-PCRSYCVQLAKTCANNVVEWQELCRSIDCPPTD-EECMPGPYSQAREATQDPDEACYLYEY 507
            L+VFG  KTFRD D CR++V +Y CLWWGS N  Y+NRC    Q   PCR +CVQ+   CANN  +W  LC  I C   D  EC P PYS +          C +YE+
Sbjct:    8 LDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANNE-DWMNLCYDIPCSAGDGPECTPAPYSTSF--------LCSVYEF 106
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BLAST of mRNA_Ecto-sp8_S_contig10758.1139.1 vs. uniprot
Match: A0A482SB23_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB23_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 8.820e-9
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   64 CIECFGLSYCDVLNGYKVEDKYFPGEATILGSCENFEDRASRLE--VFGPSKTFRDTDACR 240
            C+ C GLS C  LNGY V++KY+P       +C+  +   SR+E  +FG S+TFRDT  CR
Sbjct:   69 CVICRGLSVCTALNGYLVQEKYYPKNLNFRETCKVIDTFGSRIEKSIFGGSRTFRDTAQCR 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10758.1139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2MQ94_9STRA4.910e-4545.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z6T3_9STRA4.600e-4237.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C5P0_9STRA7.880e-4145.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2WWI3_9STRA1.140e-4045.96Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FUR6_9STRA3.310e-2447.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482SB23_9ARCH8.820e-945.90Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10758contigEcto-sp8_S_contig10758:4113..6721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score77.4
Seed ortholog evalue8.6e-12
Seed eggNOG ortholog157072.XP_008868171.1
Model size618
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2CHWE@1,2S3Q4@2759
Cds size618
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143170.2768223-CDS-Ecto-sp8_S_contig10758:4112..42561681143170.2768223-CDS-Ecto-sp8_S_contig10758:4112..4256Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10758 4113..4256 -
1681143170.2879958-CDS-Ecto-sp8_S_contig10758:4959..51121681143170.2879958-CDS-Ecto-sp8_S_contig10758:4959..5112Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10758 4960..5112 -
1681143170.2956307-CDS-Ecto-sp8_S_contig10758:5743..58511681143170.2956307-CDS-Ecto-sp8_S_contig10758:5743..5851Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10758 5744..5851 -
1681143170.303458-CDS-Ecto-sp8_S_contig10758:6220..63191681143170.303458-CDS-Ecto-sp8_S_contig10758:6220..6319Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10758 6221..6319 -
1681143170.3127747-CDS-Ecto-sp8_S_contig10758:6607..67211681143170.3127747-CDS-Ecto-sp8_S_contig10758:6607..6721Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10758 6608..6721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10758.1139.1prot_Ecto-sp8_S_contig10758.1139.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10758 4113..6721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10758.1139.1

>prot_Ecto-sp8_S_contig10758.1139.1 ID=prot_Ecto-sp8_S_contig10758.1139.1|Name=mRNA_Ecto-sp8_S_contig10758.1139.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=206bp
AHRGLASTSSNCGPASSSDPCCIECFGLSYCDVLNGYKVEDKYFPGEATI
LGSCENFEDRASRLEVFGPSKTFRDTDACREMVIDYTCLWWGSANEMYDN
RCGIEAQVYPCRSYCVQLAKTCANNVVEWQELCRSIDCPPTDEECMPGPY
SQAREATQDPDEACYLYEYHSPLNAATPRGKHTPGVIAAVAAALTTVVAF
VIGAV*
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mRNA from alignment at Ecto-sp8_S_contig10758:4113..6721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10758.1139.1 ID=mRNA_Ecto-sp8_S_contig10758.1139.1|Name=mRNA_Ecto-sp8_S_contig10758.1139.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2609bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10758:4113..6721- (Ectocarpus species8 EcLAC_412)
GCACACAGGGGCTTAGCGTCGACGAGCTCAAACTGCGGCCCCGCATCCTC
TTCGGATCCATGTTGCATCGAGTGTTTCGGTCTTTCCTACTGCGACGTGT
TGAACGGGTACAAGGTATGGATTTAATCCTCGATGATCCTGAATACACAG
CAGCCTCATGCACATCTTGTCTGGCTTCTGCGGTCGGTACCGTCGGTGCA
CAGTCAGTACCAGTGTGCCTTCGTTGAGATAATCGGTTCGCCTACAGTAC
ATATCTTGACCGCTTCGTTCTCCGCCTTCCGTAATGACCTTGACGACGAT
GGCCCAGACCTACCGAGGAAAAGGTCACGTCGACATCCACTCTGTAGCGA
GCTACACCAGTAACCCTTCTATGCACCTGGTTAAAATATTGAAACTGGCC
AGGTGGAGGATAAATACTTTCCAGGCGAGGCTACCATTCTGGGGTCGTGC
GAAAACTTCGAGGACAGGGCATCTCGCCTGGAAGTGTTCGGGCCCTCCAA
GGTGCGCTGTCAGAAAGGCTTGAGCGCAGACGTTTGGGGTTATCATTTAG
TGGCTAGTTTGCACGAACCTGCATAAGATACCGGCGGAAACCGAAGACGG
ACCTGGTATGATGTCTAGCATGTTTGCTGAGTACTCCTGTACAAAATGAA
GGCCTTGTTTATGACACATCATTACGACTTAATCCAGTCTTGATTTCAAT
AAAACATCATCCTACATGAAGAAGTACGAGAAGAAACACGATCATGATTC
GCACATCGCGCACAAACACCTAAACAAACATGAGCACAACCTCACGCTGC
GCCATGAAAATTTCATCTAGACTAGTGTGTGAGTCTGAAACGCACAATAA
TCGGTTTCTCGTTGTTCCAGACTTTCCGAGACACGGATGCCTGCCGAGAG
ATGGTCATCGACTACACATGCCTCTGGTGGGGAAGCGCCAACGAGATGTA
TGACAACCGGTGTGGCATCGAAGCGCAGGTATTTGACAAACTAGCGTGTG
CATTTGGGTCACTTTCATACCCAACGTACGGTACAGGAGCGGGCAATGGA
TCAGGGTACAAATTCGCTATGCAGAAATATCTATTCGTCTGGTAACATGT
AATAGATGATGCCATAGGCGAGGCGCCATTCTCTTACCGGAGACAGGATG
TCCGACTTCGTCGGTCGTTCAATCTCGTCTTCCGGGAGTTCCACGGCAGT
ATTCCTCACAATCCATGATTGCCTCACAACGACCGGTGAAAGCCCATGCT
ATCGTTCCTTCACACTTCCTACGCCCGCAGAAGAAACAAAGGGAACACCC
CGTCGCATGAATTCGGCCAGCTGCCACATTCTCGGAAGTTTTTTTTTAAG
ACAAACCAGTGATACAAACCAAGCCTTCGCGCTCGAGACTCTTGTCGCAA
CCTCCCCTTGGCCTTCCCGCCCCCCCTATATTTTCCTTCGGAGCAAACAG
TACAAGCCGGAACGGGGTTGGGTGGGCATTCGGAATGGAACGTTCTGTGA
ATTTACCACCCCAAAGCCCATCACACAGACGGCGGAGAAACGGACGAGCC
CTCCTCTTTTCAAGAAAGGTCGTGTATGAAACCTAAACGTGAAAACGTCC
AACGACCAGGTTTACCCCTGCCGGAGCTACTGCGTGCAGTTGGCCAAGAC
GTGCGCCAACAACGTGGTGGAGTGGCAGGAGCTGTGCCGGTCCATTGATT
GCCCCCCGACCGATGAGGAGTGCATGCCCGGCCCTTACTCGCAGGCAAGA
GAGGCTACACAGGTGTACCAGTTGTGATGTCGTTACATGGGCGGGGGCAA
GGGGAGTGAAGCAGGTGATCTTCCCACGCCAGTATGTACACCGTTGCCTA
TCGCAGGGAGAGCTATGAAATACAAGTAGAAAGCAAGAGGGCAAGATTCA
ATAAGCAGTCAGTAGCTGGGCGAAACAAAATGTAGACGAGTGCGATTCCC
CGCTCGTATGCTGCACGAAAGAGAGAAACGTGGGCTTAACAGCGGAAGAT
CGGAGAGTGTGATGACAACCCACTGGGAGTTGGAATGGACAGGGATTCGT
CGGAACCGGTTTATTTGACTCAGGGTTGAAATGGACAAAACTTCGTGAGA
ACCACTACTGTGAAAATTGCGGAAGTGGTGACGAGGTGGTACGGGGATGT
TGTTCACTGCATCTTCCAGGAGGGGCACAACCGCCTGATAGCGGGTTTTA
CGTTGGGAGGTTACGGCCGTACACAGGATCCGTCCTGAAAAAGGCGACCA
CCGCCACTTTCGGGTCCCCGTTGAGCAAGCTGATCTCGGCGGCCTTACAC
ATTTGGCAACCGCTTTGCATCGGCCCCACCAACTGTATGTATCAATAAAC
CAACACGCACACACTCCGTTACTCCTTTGTAGTACACGGGTTATTGTCAA
GCTCTCTGCCGTAGGTCCCATGACACCCTCTTCCATCTGATCCCCCCTCC
GCGATGAACTACTAGGATCCGGACGAGGCTTGCTACCTGTACGAGTACCA
CTCTCCGTTGAACGCCGCCACGCCAAGAGGGAAGCACACACCCGGTGTTA
TTGCTGCCGTTGCCGCGGCCTTAACGACGGTCGTCGCCTTCGTCATTGGA
GCAGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10758:4113..6721-

>mRNA_Ecto-sp8_S_contig10758.1139.1 ID=mRNA_Ecto-sp8_S_contig10758.1139.1|Name=mRNA_Ecto-sp8_S_contig10758.1139.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10758:4113..6721- (Ectocarpus species8 EcLAC_412)
GCACACAGGGGCTTAGCGTCGACGAGCTCAAACTGCGGCCCCGCATCCTC
TTCGGATCCATGTTGCATCGAGTGTTTCGGTCTTTCCTACTGCGACGTGT
TGAACGGGTACAAGGTGGAGGATAAATACTTTCCAGGCGAGGCTACCATT
CTGGGGTCGTGCGAAAACTTCGAGGACAGGGCATCTCGCCTGGAAGTGTT
CGGGCCCTCCAAGACTTTCCGAGACACGGATGCCTGCCGAGAGATGGTCA
TCGACTACACATGCCTCTGGTGGGGAAGCGCCAACGAGATGTATGACAAC
CGGTGTGGCATCGAAGCGCAGGTTTACCCCTGCCGGAGCTACTGCGTGCA
GTTGGCCAAGACGTGCGCCAACAACGTGGTGGAGTGGCAGGAGCTGTGCC
GGTCCATTGATTGCCCCCCGACCGATGAGGAGTGCATGCCCGGCCCTTAC
TCGCAGGCAAGAGAGGCTACACAGGATCCGGACGAGGCTTGCTACCTGTA
CGAGTACCACTCTCCGTTGAACGCCGCCACGCCAAGAGGGAAGCACACAC
CCGGTGTTATTGCTGCCGTTGCCGCGGCCTTAACGACGGTCGTCGCCTTC
GTCATTGGAGCAGTGTAG
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