mRNA_Ecto-sp8_S_contig10748.1127.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10748.1127.1
Unique NamemRNA_Ecto-sp8_S_contig10748.1127.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10748.1127.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.980e-64
Identity = 192/314 (61.15%), Postives = 195/314 (62.10%), Query Frame = 2 
Query:    2 FGGMVNGALPNASYRDSSAAALSGGDLRAAAVSTASSPSSLXXXXXXXXXXXXXXXGASMRLQSLADLATQELQTMCDVGETDTAGAHXXXXXXXXXXXXXXXXXXXXXXXXXXAPAGFSPKRHISPRLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------ERGVPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRPRSVSMPEGMELQARAWSGGYSSGRRKTGRIDSIKEELEGHEGSTHGTXXXXXXXXXXXXXXXXXXXXXXXXXXXS-KSGWGGTVEDAETLIGLA 913
            FGG VNGALPNASYRDS+AAAL GGD R AAVS ASSPSS                 ASMRLQSLADLATQELQTM DV ETDT G H                           PAGFSPKRH+SPRLSGG  XXXXXXXXXXXXXXXX        XXXXX                   ERGVPRS    XXXXXXXXXXX             HRPRSVSMPEGMELQARAWSGGYSSGRRK+GRIDSIKEELEGHEGSTHGT                  XXXXXXXXX  KSGWGGTVEDAETLIGLA
Sbjct:  106 FGGTVNGALPNASYRDSAAAALPGGDPREAAVSIASSPSSFSLSTSPRPRSASSGGVASMRLQSLADLATQELQTMGDVDETDTPGIHGHRRHQQHQRSLSNGNSQSSSARTPPLPAGFSPKRHLSPRLSGGGGXXXXXXXXXXXXXXXXVSALSSAAXXXXXCSAPLPPARAAPXXXXXLRERGVPRSRHERXXXXXXXXXXXHAAARAEGGRGMRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELEGHEGSTHGTRSRTWRAGSGGSSGFDGEXXXXXXXXXXXKSGWGGTVEDAETLIGLA 419
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BLAST of mRNA_Ecto-sp8_S_contig10748.1127.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 3.400e-56
Identity = 218/253 (86.17%), Postives = 222/253 (87.75%), Query Frame = 2 
Query:    2 FGGMVNGALPNASYRDSSAAALSGGDLRAAAVSTASSPSSLXXXXXXXXXXXXXXX----GASMRLQSLADLATQELQTMCDVGETDTAGAHXXXXXXXXXXXXXXXXXXXXXXXXXXAPAGFSPKRHISPRLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGVPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRPRSVSMPEGMELQARAWSGGYSSGRRKTGRIDSIKEELE 748
            FGGM+NGALPN SYRDS+AAALSGGD RAA VSTASSPS  XXXXXXXXXXXXXXX    GASMRLQSLADLATQELQTMCDV ETDTAGAH XXXXXXXXXXXXXXXXXXXXX    APAGFSPKRH+SPRLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      ERGVPRS      XXXXXXXXXXXXXXXXXX    HRPRSVSMPEGMELQARAWSGGYSSGRRK+GRIDSIKEELE
Sbjct:  120 FGGMLNGALPNTSYRDSAAAALSGGDPRAATVSTASSPSXXXXXXXXXXXXXXXXXXIGGGASMRLQSLADLATQELQTMCDVDETDTAGAHGXXXXXXXXXXXXXXXXXXXXXRTPPAPAGFSPKRHLSPRLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLR----ERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELE 368
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10748.1127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K330_9PHAE1.980e-6461.15CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LD77_ECTSI3.400e-5686.17CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10748contigEcto-sp8_S_contig10748:3600..5793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score192.2
Seed ortholog evalue3.5e-46
Seed eggNOG ortholog2880.D8LD77
Model size915
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.CCT motif
EggNOG OGs2E1UC@1,2S94C@2759
Ec32 ortholog descriptionCCT domain protein
Ec32 orthologEc-05_001470.1
Cds size903
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143169.371154-UTR-Ecto-sp8_S_contig10748:3599..36091681143169.371154-UTR-Ecto-sp8_S_contig10748:3599..3609Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10748 3600..3609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143169.3825312-CDS-Ecto-sp8_S_contig10748:3609..38131681143169.3825312-CDS-Ecto-sp8_S_contig10748:3609..3813Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10748 3610..3813 +
1681143169.391726-CDS-Ecto-sp8_S_contig10748:4372..48341681143169.391726-CDS-Ecto-sp8_S_contig10748:4372..4834Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10748 4373..4834 +
1681143169.400955-CDS-Ecto-sp8_S_contig10748:5222..52941681143169.400955-CDS-Ecto-sp8_S_contig10748:5222..5294Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10748 5223..5294 +
1681143169.4102423-CDS-Ecto-sp8_S_contig10748:5628..57931681143169.4102423-CDS-Ecto-sp8_S_contig10748:5628..5793Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10748 5629..5793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10748.1127.1prot_Ecto-sp8_S_contig10748.1127.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10748 3610..5793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10748.1127.1

>prot_Ecto-sp8_S_contig10748.1127.1 ID=prot_Ecto-sp8_S_contig10748.1127.1|Name=mRNA_Ecto-sp8_S_contig10748.1127.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=301bp
MVNGALPNASYRDSSAAALSGGDLRAAAVSTASSPSSLSFSTSPRPRSAS
SGGGASMRLQSLADLATQELQTMCDVGETDTAGAHSHRRHHHHHRSLSNG
NGQSSSTRTPPAPAGFSPKRHISPRLSGGGGGGGGGRGVSALSSAAAAVA
SCSSPSPPARAAPSHHHHLRERGVPRSRHERAEEEEEEEEEMRAAARAGG
GRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKTGRIDSIKEELEGHEG
STHGTRSRTWRTGSGGSSGFDGEGGGGGGASGSKSGWGGTVEDAETLIGL
A
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mRNA from alignment at Ecto-sp8_S_contig10748:3600..5793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10748.1127.1 ID=mRNA_Ecto-sp8_S_contig10748.1127.1|Name=mRNA_Ecto-sp8_S_contig10748.1127.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2194bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10748:3600..5793+ (Ectocarpus species8 EcLAC_412)
GTTCGGCGGGATGGTGAACGGAGCGCTGCCGAACGCTTCGTATCGCGACT
CCTCTGCCGCCGCTCTGTCCGGCGGCGACCTTAGGGCGGCGGCAGTATCG
ACCGCCTCGTCGCCGTCTTCGTTATCGTTTTCAACATCCCCTCGCCCCCG
AAGCGCCTCCAGCGGCGGGGGGGCGAGCATGCGGCTGCAGTCGCTGGCGG
ACCTCGCGACTCAGGTATTAATTTTTTTTTTAAGTTGCATTTCTGCTGCT
GCTGTTGGTTGTTGTCCCCGGGGTACATGTGGTAGGCGTGGTTGGCAAAA
GCGGTAGGCGTTGTCCCGCTGCTGATGTGCCGAGAGCCTACTGGCGAACC
TTGGATGGAAAAGAGAGTACCTCGCTACAGGATCGATACACCCCACTCCA
GTTGGTGGTGGCTATTCTCCGGGGTATACAGCAGTAGTGAGTGTTCCTTG
TTGATGTTACCGCTACTGTCGTGCCAAGATTCACTGGCGAACCCTGGTGG
TGGCCTTTTTTTTTTTTTTTTCTTGTATGACACAACGAATGCATCTCTAT
CCACAGATAGAAAAGTCTAGGATAGATTAGTAATGAATCCATAGCGTCAG
CGGAAGGCTACCTGTATTTCCACGTTTTTATTTTTTTTTTTATTATTCTC
GCCACACAGGTGTAAGTCTTGTTACTGCTTTTCCCCGACGGGGCTGCTGC
TGCTGCTGTACCACAACCTAAACGCCCTGCCGTTACACCCTGCTCCCCCG
CCTTCCCTCCATCCGCCCGCCAGGAACTCCAAACCATGTGCGACGTCGGC
GAGACCGACACGGCGGGTGCCCACAGCCACCGCCGCCACCACCACCACCA
CCGCAGCCTCAGCAACGGCAACGGCCAGTCATCGTCCACTCGAACCCCTC
CCGCACCCGCGGGCTTTTCTCCGAAACGGCACATATCTCCCCGCCTTTCC
GGCGGCGGCGGCGGCGGCGGCGGCGGCAGAGGCGTTTCTGCCCTGTCGTC
GGCAGCGGCGGCTGTGGCATCGTGCTCGTCGCCGTCGCCGCCGGCGCGCG
CTGCCCCCAGTCACCACCACCACCTGCGGGAGAGAGGGGTACCCCGCTCC
CGCCACGAGCGGGCGGAGGAGGAGGAGGAAGAGGAGGAGGAGATGCGCGC
GGCCGCCCGGGCCGGCGGCGGGCGGGGGAGGCGGCACCGCCCCCGGTCGG
TGTCGATGCCGGAGGGGATGGAGCTCCAGGCCAGGGTGAGTTTTGTTTTG
TTTTGTTTTGGTCTCGCGCGGCGGTGTGGCGGTGCAATCAACGTGCTGTA
GTATTTTCAAGTGAATTTTGATGTGCTGAAGTTAATATATTAGGACGTTG
ATTGCACCATAGCAGGCACAGGGGTGTCCTGAAGAGCAGGGAGGGGGGCG
GTTGGGGGTGTGGAGGTTGAGGATCCATTTGTCGGTGCGTCTGCCTCTGC
TGGATTGTTTTTTTGTCGATTGTGGCTGTGGCTACCGCTGTCGAGCCGCG
GTTCGGATTACTCTGTAGCTCGTTGCGAATCAGATTGTGGAAAAGTCCCC
CTCCCCCCCTCCAGCATGTCTCCTTATGCCCACTCTCTGACGCTGTGGTG
TTGGTTCGTGGGACGACGGACAGGCGTGGTCGGGCGGGTACTCGTCCGGC
AGGAGGAAGACCGGACGGATCGACTCCATCAAGGAGGAGCTCGAGGTAAC
CTTTTGTCTTCGCCTTGCATTTGCCGCTGCTGCTGCCGCCGCTGCTGCTT
CTGCGATTGTTGTTGGCCCTTTCTCACTTCGACGTGTTGATCCGGCTGAG
GTAGGTGTTCGGGTCACGTAGGAAGGCAAGCAGCCCTCTTCAAGTTTCCC
TAAAAGTCGGGCTGAGCGATAGAATTTCGTCCCTGCTTGCACGATCTCCC
TCCCTCCCCACAATCATTTTTTGTTGTTCATCCCTAGGTCCGCCTTCTCG
ATTACATGATGCCCACCACGCAGCAGGCTTACCCTGATCTTTGTAACCCT
TCATACGGTTTTGTCGTTGCGTGTGCCAGGGACACGAGGGTAGTACCCAT
GGCACCCGCTCCCGCACGTGGAGGACCGGGTCGGGCGGAAGCAGCGGCTT
CGACGGCGAGGGTGGCGGCGGCGGCGGCGCCTCGGGGTCCAAGAGCGGCT
GGGGCGGAACCGTCGAGGACGCCGAGACTCTCATCGGACTTGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10748:3600..5793+

>mRNA_Ecto-sp8_S_contig10748.1127.1 ID=mRNA_Ecto-sp8_S_contig10748.1127.1|Name=mRNA_Ecto-sp8_S_contig10748.1127.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10748:3600..5793+ (Ectocarpus species8 EcLAC_412)
ATGGTGAACGGAGCGCTGCCGAACGCTTCGTATCGCGACTCCTCTGCCGC
CGCTCTGTCCGGCGGCGACCTTAGGGCGGCGGCAGTATCGACCGCCTCGT
CGCCGTCTTCGTTATCGTTTTCAACATCCCCTCGCCCCCGAAGCGCCTCC
AGCGGCGGGGGGGCGAGCATGCGGCTGCAGTCGCTGGCGGACCTCGCGAC
TCAGGAACTCCAAACCATGTGCGACGTCGGCGAGACCGACACGGCGGGTG
CCCACAGCCACCGCCGCCACCACCACCACCACCGCAGCCTCAGCAACGGC
AACGGCCAGTCATCGTCCACTCGAACCCCTCCCGCACCCGCGGGCTTTTC
TCCGAAACGGCACATATCTCCCCGCCTTTCCGGCGGCGGCGGCGGCGGCG
GCGGCGGCAGAGGCGTTTCTGCCCTGTCGTCGGCAGCGGCGGCTGTGGCA
TCGTGCTCGTCGCCGTCGCCGCCGGCGCGCGCTGCCCCCAGTCACCACCA
CCACCTGCGGGAGAGAGGGGTACCCCGCTCCCGCCACGAGCGGGCGGAGG
AGGAGGAGGAAGAGGAGGAGGAGATGCGCGCGGCCGCCCGGGCCGGCGGC
GGGCGGGGGAGGCGGCACCGCCCCCGGTCGGTGTCGATGCCGGAGGGGAT
GGAGCTCCAGGCCAGGGCGTGGTCGGGCGGGTACTCGTCCGGCAGGAGGA
AGACCGGACGGATCGACTCCATCAAGGAGGAGCTCGAGGGACACGAGGGT
AGTACCCATGGCACCCGCTCCCGCACGTGGAGGACCGGGTCGGGCGGAAG
CAGCGGCTTCGACGGCGAGGGTGGCGGCGGCGGCGGCGCCTCGGGGTCCA
AGAGCGGCTGGGGCGGAACCGTCGAGGACGCCGAGACTCTCATCGGACTT
GCG
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