mRNA_Ecto-sp8_S_contig10746.1122.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10746.1122.1
Unique NamemRNA_Ecto-sp8_S_contig10746.1122.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.970e-40
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPR 186
            DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPR
Sbjct: 2075 DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPR 2136
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BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 3.970e-40
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPR 186
            DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPR
Sbjct: 1675 DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPR 1736
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BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: A0A2K3DS27_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DS27_CHLRE)

HSP 1 Score: 72.8 bits (177), Expect = 1.690e-13
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGK-QGIDSVNWSCWECLIEDSARD-GVRVP 183
            DDG   +CV+CGQ GNLLCCD CP AYH RC+G   + +    W C EC +       G+RVP
Sbjct:  777 DDGNTENCVLCGQGGNLLCCDRCPAAYHMRCIGETTRSVPEGEWRCPECAVGGRGEAAGLRVP 839
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BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: A0A8J6C1P9_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J6C1P9_ZIZPA)

HSP 1 Score: 68.2 bits (165), Expect = 7.140e-12
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGI-DSVNWSCWECLIEDSARDGVR 177
            +DG   +C +CG VGNLLCCD CP A+H +CVG  + +    +W C ECLI+ +  DG R
Sbjct:  418 EDGNSDECYLCGMVGNLLCCDGCPAAFHSKCVGVVEDLLPEGDWFCPECLIQKN--DGSR 475
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BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: A0A3S3N9T3_9MAGN (Zinc finger protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3N9T3_9MAGN)

HSP 1 Score: 67.4 bits (163), Expect = 1.330e-11
Identity = 27/51 (52.94%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:    1 DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVG-GKQGIDSVNWSCWECLI 150
            DDG   +C +CG  G LLCCD CP AYHPRC+G  K  I    W C EC +
Sbjct:  370 DDGNGDECKLCGMDGTLLCCDGCPYAYHPRCIGLTKASIPEGQWFCPECSV 420
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BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: A0A833VV96_9POAL (Increased DNA methylation 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VV96_9POAL)

HSP 1 Score: 63.5 bits (153), Expect = 3.030e-10
Identity = 20/51 (39.22%), Postives = 29/51 (56.86%), Query Frame = 1 
Query:    1 DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIE 153
            +D     C +CG  G LLCCD CP  YHP C+  ++ +   +W CW C+ +
Sbjct:  853 EDQNDDTCALCGDGGELLCCDRCPSTYHPTCLPSQEELPEGSWYCWHCICQ 903
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BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: A0A2C9UJH1_MANES (PHD-type domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UJH1_MANES)

HSP 1 Score: 61.2 bits (147), Expect = 1.950e-9
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGK-QGIDSVNWSCWEC 144
            DDG  ++CVIC   G+LLCCD CP  YH +C+    + I S NW C  C
Sbjct:   51 DDGHYYECVICDNGGDLLCCDTCPCTYHLQCLNPPLESIPSGNWQCENC 99
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BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: A0A3N6SBZ8_BRACR (Uncharacterized protein n=1 Tax=Brassica cretica TaxID=69181 RepID=A0A3N6SBZ8_BRACR)

HSP 1 Score: 60.8 bits (146), Expect = 2.690e-9
Identity = 26/50 (52.00%), Postives = 29/50 (58.00%), Query Frame = 1 
Query:    4 DGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGG-KQGIDSVNWSCWECLI 150
            DG   +C +CG  G LLCCD CP AYH RC+G  K  I    W C EC I
Sbjct:  404 DGNSDECRLCGMDGTLLCCDECPLAYHSRCIGVLKMYIPDGPWYCPECTI 453
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BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: A0A7S3PI96_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PI96_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.220e-9
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   22 CVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARD 168
            C ICG +G LLCCD+CP+ YH +C+G     ++  W+C ECL  D A+D
Sbjct:  184 CHICGLLGELLCCDSCPKVYHLKCLGLDAMPETEIWNCPECL--DKAKD 230
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Match: A0A0L0DWD5_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DWD5_THETB)

HSP 1 Score: 59.3 bits (142), Expect = 9.360e-9
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   22 CVICGQVGNLLCCDNCPRAYHPRCVGGKQG-IDSVNWSCWEC 144
            C +C  +G+L+CCD+CPR YH  CVG +   ID+  W C EC
Sbjct:  535 CAVCSDIGDLICCDSCPRVYHADCVGSRAPPIDAAVWHCPEC 576
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10746.1122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LKE0_9PHAE3.970e-40100.00PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FZH6_ECTSI3.970e-40100.00WD repeat domain-containing protein, putative n=1 ... [more]
A0A2K3DS27_CHLRE1.690e-1349.21Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A8J6C1P9_ZIZPA7.140e-1248.33Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A3S3N9T3_9MAGN1.330e-1152.94Zinc finger protein n=1 Tax=Cinnamomum micranthum ... [more]
A0A833VV96_9POAL3.030e-1039.22Increased DNA methylation 1 n=1 Tax=Carex littleda... [more]
A0A2C9UJH1_MANES1.950e-948.98PHD-type domain-containing protein n=1 Tax=Manihot... [more]
A0A3N6SBZ8_BRACR2.690e-952.00Uncharacterized protein n=1 Tax=Brassica cretica T... [more]
A0A7S3PI96_9STRA9.220e-948.98Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A0L0DWD5_THETB9.360e-950.00Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10746contigEcto-sp8_S_contig10746:840..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score148.3
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog2880.D7FZH6
Preferred nameCTF1
Model size186
KEGG koko:K11446,ko:K11797,ko:K11798
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030545,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048018,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0098772,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons1
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG0553@1,COG2319@1,KOG0383@2759,KOG0644@2759,KOG1633@1,KOG1633@2759
Cds size186
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143169.2591872-CDS-Ecto-sp8_S_contig10746:839..10251681143169.2591872-CDS-Ecto-sp8_S_contig10746:839..1025Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10746 840..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10746.1122.1prot_Ecto-sp8_S_contig10746.1122.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10746 840..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10746.1122.1

>prot_Ecto-sp8_S_contig10746.1122.1 ID=prot_Ecto-sp8_S_contig10746.1122.1|Name=mRNA_Ecto-sp8_S_contig10746.1122.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=62bp
DDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLI
EDSARDGVRVPR
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mRNA from alignment at Ecto-sp8_S_contig10746:840..1025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10746.1122.1 ID=mRNA_Ecto-sp8_S_contig10746.1122.1|Name=mRNA_Ecto-sp8_S_contig10746.1122.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10746:840..1025+ (Ectocarpus species8 EcLAC_412)
GACGACGGCAAGGTGTTCGACTGCGTCATCTGCGGACAGGTCGGGAACCT
CCTGTGCTGCGACAACTGCCCGCGGGCGTACCACCCCCGGTGCGTCGGCG
GCAAGCAGGGCATCGACAGCGTCAACTGGTCCTGTTGGGAGTGCCTCATC
GAGGACTCGGCTCGCGACGGCGTGCGGGTTCCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10746:840..1025+

>mRNA_Ecto-sp8_S_contig10746.1122.1 ID=mRNA_Ecto-sp8_S_contig10746.1122.1|Name=mRNA_Ecto-sp8_S_contig10746.1122.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10746:840..1025+ (Ectocarpus species8 EcLAC_412)
GACGACGGCAAGGTGTTCGACTGCGTCATCTGCGGACAGGTCGGGAACCT
CCTGTGCTGCGACAACTGCCCGCGGGCGTACCACCCCCGGTGCGTCGGCG
GCAAGCAGGGCATCGACAGCGTCAACTGGTCCTGTTGGGAGTGCCTCATC
GAGGACTCGGCTCGCGACGGCGTGCGGGTTCCGCGG
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