mRNA_Ecto-sp8_S_contig10745.1121.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10745.1121.1
Unique NamemRNA_Ecto-sp8_S_contig10745.1121.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: D8LJ63_ECTSI (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ63_ECTSI)

HSP 1 Score: 846 bits (2186), Expect = 5.400e-289
Identity = 560/625 (89.60%), Postives = 562/625 (89.92%), Query Frame = 1
Query:    1 QEMMSNAHNPVGTKTVLIEGERGSGKSILLSKAVGMMDGHELHTFCSSGDMHERHNSLFPFRQILCQLLELDQDRLNWYAPANRPPPATGPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEXXXVGDANSGTDGXSGAPALAAPQAAPPPRNRRSSWVSNVPGRRRSTDAPNALNPYEPTAARGHLVKNPGFMALMKDPELRKHLPLLNMILPLYNEQAAGAVTTGAQDTHSKLRRLADMIAALLVHRLEASKMGAATTTAGYRKDAAVSATPTPANNMTRAGSAFRLAGIVDATKVNSVEEGRGCGAAIVLDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSMLTPSRENNYPAASSPTSSNASDDAMVAPGSPXXXXXXXX-ERDDVDAQINTLVRVGLLERSSPESVRFVANYMVTVIYDMILHSKRQDMHK 1872
            QEMMSNAHNPVGTKTVLIEGERGSGKSILLSKAVGMMDGHELHTFCSSGDMHERH SLFPFRQILCQLLELDQDRLNWYA ANRP        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX          X               R RRSSWVSNVPGRRRS DAPNALNPYEPTAARGHLVKNPGFMALMKDPEL KHLPLLNMILPLYNEQAAGAVTTGAQDTHSKLRRLADMIAALLVHRLEASKMGAATTTAGYRKDAAVSATPTPANNMTRAGSAFRLA + DATKVNSVEEGRGCGAAIVLDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALK VPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSMLTPSRENN+PA S                  XXXXXXXX ERDDVDAQINTLVRVGLLERSSPESVRFVA YMVTVIYDMILHSKRQDMHK
Sbjct:  743 QEMMSNAHNPVGTKTVLIEGERGSGKSILLSKAVGMMDGHELHTFCSSGDMHERHTSLFPFRQILCQLLELDQDRLNWYAAANRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------RKRRSSWVSNVPGRRRSIDAPNALNPYEPTAARGHLVKNPGFMALMKDPELGKHLPLLNMILPLYNEQAAGAVTTGAQDTHSKLRRLADMIAALLVHRLEASKMGAATTTAGYRKDAAVSATPTPANNMTRAGSAFRLAAVGDATKVNSVEEGRGCGAAIVLDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALKTVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSMLTPSRENNHPATSXXXXXXXXXXXXXXXXXXXXXXXXXXXERDDVDAQINTLVRVGLLERSSPESVRFVAKYMVTVIYDMILHSKRQDMHK 1359          
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: A0A6H5KP26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP26_9PHAE)

HSP 1 Score: 437 bits (1125), Expect = 1.150e-143
Identity = 229/249 (91.97%), Postives = 234/249 (93.98%), Query Frame = 1
Query: 1126 MHLLRKALPGMLIFAAFRPFSEMNLKHTIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSMLTPSRENNYPAASSPTSSNASDDAMVAPGSPXXXXXXXXERDDVDAQINTLVRVGLLERSSPESVRFVANYMVTVIYDMILHSKRQDMHK 1872
            MHLLRK LPGMLIFAAFRPFSEMNLKHTIALK VPGTLKMNMGRLTATQV LILSD FGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEG VEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVH+MLTPSREN++P  SSPTS++ASDDAMVAPGSP        ERDDVDAQINTLVRVGLLERSSPESVRFVANYMVTVIYDMILHSKRQDMHK
Sbjct:    1 MHLLRKTLPGMLIFAAFRPFSEMNLKHTIALKTVPGTLKMNMGRLTATQVTLILSDIFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGIVEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHAMLTPSRENSHPTTSSPTSASASDDAMVAPGSPAEGGRGGGERDDVDAQINTLVRVGLLERSSPESVRFVANYMVTVIYDMILHSKRQDMHK 249          
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: A0A1V9ZMC2_9STRA (Guanylate cyclase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMC2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.630e-12
Identity = 71/268 (26.49%), Postives = 127/268 (47.39%), Query Frame = 1
Query: 1081 VLDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNL--GAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSMLTPSRENNYPAASSPTSSNASDDAMVAPGSPXXXXXXXXERDDVDAQINTLVRVGL--LERSSPESVRFVANYMVTVIYDMILHSKRQDMHK 1872
            VLD+ QW+D  SW+L+         + +  A R  +         L+  P T + ++  L+     L LS  +G+   +  LLEF+   A GNPRD I +ME L +   +E++L  G   + K++ E  +++   T A V+  YD L+  +Q  ++ A+V  + + LD L     ML    E  Y  + SP     + +A    GS                 +++L   G+  ++R S E++ F +  +  V+Y+++L S+R+ +H+
Sbjct:  842 VLDDAQWIDGPSWDLLTAALAISTNVNVVVAHRADAAPAHDAFKKLEVAPVTFRWDLANLSLRDTSLFLSHRYGIAIMNSYLLEFVHGRAHGNPRDTITLMERLLEIEAIEIDLDRGVCHVHKDIHEVDMEVSVQTRAKVMYHYDSLSPVSQLALRIASVSLEFITLDCLT---YMLKKVFELEYDNSFSP---KVAREASADGGSTRALAASQSLELQALQGLSSLEGHGIVKIDRHS-EAIEFTSAEIRAVVYNVMLPSQREVIHR 1102          
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: A0A1W0A0G8_9STRA (Guanylate cyclase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0G8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.150e-12
Identity = 64/267 (23.97%), Postives = 122/267 (45.69%), Query Frame = 1
Query: 1084 LDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNL--GAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDV-HSMLTPSRENNYPAASSPTSSNASDDAMVAPGSPXXXXXXXXERDDVDAQINTLVRVGLLERS-SPESVRFVANYMVTVIYDMILHSKRQDMHK 1872
            LD+ QW+D  SW+L+  +    P +    A+R  +    +    L++ P T + ++  L+     L LS  FG+   +  LLEF+   A GNPRD I +M+ L +   ++++L  G   +LK++ E  ++I     A V+  YD L   +Q  +  A+V    +    L  +   +     E ++     P + +         GS               A +      G+++   + E + FV++ M +V+Y+++L S+R+ +H+
Sbjct:  800 LDDAQWIDPQSWDLLSTVLTLSPQITCVVAYRQDASPPHEMFKKLESAPTTFRWDLTNLSPRDTSLFLSHRFGIAIMNSYLLEFVHGRAHGNPRDTIALMKRLLELEAIQIDLERGVCHVLKDIHEVDMEISVQIRAKVLYHYDNLNTMSQLALHIASVSLDYISFQCLGYILRKICELEAEGSFNVHQKPKNPSEGTPPSSIEGSTKSATSFQSSLMQGMAGMGVCEVQGIVKLDRTKEIIEFVSSEMRSVVYNVMLPSQREIIHR 1066          
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: A0A426TT25_9CHLR (Adenylate/guanylate cyclase domain-containing protein n=1 Tax=Candidatus Viridilinea halotolerans TaxID=2491704 RepID=A0A426TT25_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 6.910e-11
Identity = 51/177 (28.81%), Postives = 86/177 (48.59%), Query Frame = 1
Query: 1078 IVLDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSENSL----KIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVH 1596
            ++ ++ QWLD NSW L+H     +P +L   A RP +   L     L   P +++M +  LTA ++  +L+   GV +    L + +   A+GNP     ++  L + G +EVN G +  L       L     + D     +I++ D+LT   Q  ++ A+VIGQ   L+ L  +H
Sbjct:  625 LIFEDAQWLDANSWALLHAAITRIPTLLCLLATRPMASPPLAFQ-QLAYRPDSVRMQLTGLTADELRQLLARRLGVAKVPNTLSDLISARAQGNPFMAEEILTALRERGLLEVNDG-ICQLNTDDPGQLTALGNLPDTIEGLIISRIDRLTAAQQLTLKVASVIGQCFALNTLAALH 799          
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: A0A2M7G6U3_9BACT (Uncharacterized protein n=1 Tax=bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46 TaxID=2014261 RepID=A0A2M7G6U3_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 5.140e-10
Identity = 46/184 (25.00%), Postives = 93/184 (50.54%), Query Frame = 1
Query: 1078 IVLDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHT-IALKAVPGTLK------MNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSE-NSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSML 1605
            +VLD++QWLD  SW+L+  +R  +PG+++    RP +  + K   I L+A     K      M +GR+ A ++  +++   GV      +L+ +   A+G+P     +   L + G ++VN G   +     E   L++ +     ++++ D+L    Q  ++ A+VIG++     L D++ ++
Sbjct:  588 VVLDDSQWLDSLSWQLVEQVRYEVPGLMVVLVCRPLANADDKTPQICLRAWENLQKSPLAEHMILGRMPAAEIETLVASKLGVHSVPAAVLDLIASRAEGHPFFSQELALSLRENGHLKVNQGQCELSLSPEELRQLQLPNSIEGAIVSRLDRLLPTQQLAMKIASVIGRQFDFKALYDIYPLV 771          
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: A0A1L9BDN0_9DELT (Uncharacterized protein n=4 Tax=Archangiaceae TaxID=39 RepID=A0A1L9BDN0_9DELT)

HSP 1 Score: 74.3 bits (181), Expect = 5.160e-10
Identity = 47/176 (26.70%), Postives = 88/176 (50.00%), Query Frame = 1
Query: 1078 IVLDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSE-NSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSM 1602
            ++L++ QWLD +SWEL+  + + LPG L+  + RP ++        L  +P T ++ +  +T   ++ ++    GV R  EE+  F+   A+G+P     +   L   G + V  G   +     + ++L +       + ++ D+LT   Q  ++AA+VIG+     LL DVH +
Sbjct:  592 LLLEDGQWLDSSSWELLRRVARDLPGWLLVLSTRPLADNPPPALEFLLRLPSTRRVELSAMTDGDILALVCARLGVTRLQEEVAAFILEKAEGHPFYSEELAYTLRDNGLLIVEHGECRLAPAAGKLDALGLPSTLEGLITSRIDRLTTVQQLTLKAASVIGRTFGSRLLGDVHPL 767          
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: A0A485LB07_9STRA (Aste57867_18693 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB07_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.210e-9
Identity = 67/271 (24.72%), Postives = 117/271 (43.17%), Query Frame = 1
Query: 1087 DNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNL--GAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSMLTPSRENNYPAASSPTSSNASDDAMVAPGSPXXXXXXXXERDDVDAQINTLVRVGLLERSS-------PESVRFVANYMVTVIYDMILHSKRQDMHK 1872
            D+ QW+D  SW+L+  + +  P +      R  +         L+A    LK  M  L+     L+LS  +G+   +  LLE++   A GNP   I +M+ L     + ++L  G V +LK++ +  L+I   T A V+  +DQL    Q  ++  +V    +  D L  +   +     N     SS    +AS  +  AP                   +  L+ +G+ E           E VRF ++ M  V+Y+++L S+R+ +H+
Sbjct:  861 DDCQWIDAASWDLLLKVLELSPTITCVVGVRTDALPPHAEFKRLEAHTHALKWEMRNLSLRDTSLLLSHRYGIAIMNSYLLEYVHGRAGGNPGHTIALMQRLLDLDTIYIDLERGVVHVLKDIHDVDLEISLQTRAKVMHHFDQLNTAGQLALRIVSVSIDYIHFDALSYLLRAVFAIEYNASFTHSSKGDDDASSTSAAAPS---------FSDHGASLFVQALLGLGVCENHGLVAVDHHNEVVRFASDDMRLVVYNVMLPSQRETIHR 1122          
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: A0A1Q7X9W7_9BACT (Sigma-54 factor interaction domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7 TaxID=1805343 RepID=A0A1Q7X9W7_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 4.400e-6
Identity = 48/189 (25.40%), Postives = 91/189 (48.15%), Query Frame = 1
Query: 1024 VDATKVNSVEEGRGCGAAIVLDNTQWLDHNSWELMHLLRKALPG--MLIFAAFRPFSEMNLKHTIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLL 1584
            ++A K+  +EE R     +V ++  W+D  +  ++  L ++LP   +L+  ++RP      +HT   K+    L+++   L+      +L    G +    EL + L     GNP  +   +  L + G +  + GA  + +   E  +++     A + A+ D+L    + L+Q AAVIG++VP DLL
Sbjct:  649 LEAVKLLPLEESRRQPVILVFEDLHWIDSETQAVLDTLVESLPSHRVLLLVSYRP----EYQHTWGSKSYYAQLRLD--PLSPEDAHALLDRLVGRETVMAELKKVLIERTDGNPFFLEESVRTLVETGVLVGDRGAYGVARPAGE--IQVPATVQAVLAARIDRLPPEDEALLQTAAVIGKDVPFDLL 829          
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Match: A0A1I5VPM4_9BACT (Adenylate and Guanylate cyclase catalytic domain-containing protein n=1 Tax=Parafilimonas terrae TaxID=1465490 RepID=A0A1I5VPM4_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.310e-5
Identity = 37/161 (22.98%), Postives = 73/161 (45.34%), Query Frame = 1
Query: 1078 IVLDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIG 1560
            I++D+ QWL+ NSW+L+  +   L    +  AF+  +       +  K   G   + +  L+  +   ++ +  GV   SEE+   +   AKGNP   I + + L  +  + +      I K ++   + + +     +  K D+L  G+Q  ++A +V G
Sbjct:  593 IIIDDAQWLEENSWQLIESINNYLRQCFVVLAFQKTAGNAQTELLRNK---GCKTIVLNALSEEEEAKLICERLGVAGISEEVFNSVHAIAKGNPFFCIELADSLRTQELITIENDNCRINKNITTQKISLPETVRGALRRKIDRLNPGSQLSMKAGSVAG 750          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10745.1121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LJ63_ECTSI5.400e-28989.60Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A6H5KP26_9PHAE1.150e-14391.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9ZMC2_9STRA1.630e-1226.49Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A1W0A0G8_9STRA2.150e-1223.97Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A426TT25_9CHLR6.910e-1128.81Adenylate/guanylate cyclase domain-containing prot... [more]
A0A2M7G6U3_9BACT5.140e-1025.00Uncharacterized protein n=1 Tax=bacterium (Candida... [more]
A0A1L9BDN0_9DELT5.160e-1026.70Uncharacterized protein n=4 Tax=Archangiaceae TaxI... [more]
A0A485LB07_9STRA1.210e-924.72Aste57867_18693 protein n=1 Tax=Aphanomyces stella... [more]
A0A1Q7X9W7_9BACT4.400e-625.40Sigma-54 factor interaction domain-containing prot... [more]
A0A1I5VPM4_9BACT1.310e-522.98Adenylate and Guanylate cyclase catalytic domain-c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10745contigEcto-sp8_S_contig10745:20..6519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score846.7
Seed ortholog evalue7.1e-243
Seed eggNOG ortholog2880.D8LJ63
Model size1872
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.Adenylate cyclase
EggNOG OGs2QPPT@2759,COG2114@1
Ec32 ortholog descriptionAdenylyl cyclase class-3/4/guanylyl cyclase
Ec32 orthologEc-02_004910.3
Cds size1866
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10745.1121.1prot_Ecto-sp8_S_contig10745.1121.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10745 26..6519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143169.0464134-UTR-Ecto-sp8_S_contig10745:19..251681143169.0464134-UTR-Ecto-sp8_S_contig10745:19..25Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10745 20..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143169.0574048-CDS-Ecto-sp8_S_contig10745:25..1151681143169.0574048-CDS-Ecto-sp8_S_contig10745:25..115Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 26..115 +
1681143169.066794-CDS-Ecto-sp8_S_contig10745:547..6401681143169.066794-CDS-Ecto-sp8_S_contig10745:547..640Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 548..640 +
1681143169.0845683-CDS-Ecto-sp8_S_contig10745:867..10941681143169.0845683-CDS-Ecto-sp8_S_contig10745:867..1094Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 868..1094 +
1681143169.1007173-CDS-Ecto-sp8_S_contig10745:1292..15361681143169.1007173-CDS-Ecto-sp8_S_contig10745:1292..1536Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 1293..1536 +
1681143169.1099133-CDS-Ecto-sp8_S_contig10745:1902..20761681143169.1099133-CDS-Ecto-sp8_S_contig10745:1902..2076Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 1903..2076 +
1681143169.1184154-CDS-Ecto-sp8_S_contig10745:2389..25001681143169.1184154-CDS-Ecto-sp8_S_contig10745:2389..2500Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 2390..2500 +
1681143169.1264124-CDS-Ecto-sp8_S_contig10745:3749..39191681143169.1264124-CDS-Ecto-sp8_S_contig10745:3749..3919Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 3750..3919 +
1681143169.1342783-CDS-Ecto-sp8_S_contig10745:4334..44911681143169.1342783-CDS-Ecto-sp8_S_contig10745:4334..4491Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 4335..4491 +
1681143169.1423576-CDS-Ecto-sp8_S_contig10745:4889..49581681143169.1423576-CDS-Ecto-sp8_S_contig10745:4889..4958Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 4890..4958 +
1681143169.1512558-CDS-Ecto-sp8_S_contig10745:5159..52911681143169.1512558-CDS-Ecto-sp8_S_contig10745:5159..5291Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 5160..5291 +
1681143169.1595707-CDS-Ecto-sp8_S_contig10745:5701..57941681143169.1595707-CDS-Ecto-sp8_S_contig10745:5701..5794Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 5702..5794 +
1681143169.1710389-CDS-Ecto-sp8_S_contig10745:6213..65191681143169.1710389-CDS-Ecto-sp8_S_contig10745:6213..6519Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10745 6214..6519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10745.1121.1

>prot_Ecto-sp8_S_contig10745.1121.1 ID=prot_Ecto-sp8_S_contig10745.1121.1|Name=mRNA_Ecto-sp8_S_contig10745.1121.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=622bp
MMSNAHNPVGTKTVLIEGERGSGKSILLSKAVGMMDGHELHTFCSSGDMH
ERHNSLFPFRQILCQLLELDQDRLNWYAPANRPPPATGPSPAAAAAAAAA
AAASSTAAMAAAASAAAAGAAGIVEKGGEVASRREQLFRRASTRRRSSIV
AVGLGMLGGGGGGGGGATEGGAVGDANSGTDGGSGAPALAAPQAAPPPRN
RRSSWVSNVPGRRRSTDAPNALNPYEPTAARGHLVKNPGFMALMKDPELR
KHLPLLNMILPLYNEQAAGAVTTGAQDTHSKLRRLADMIAALLVHRLEAS
KMGAATTTAGYRKDAAVSATPTPANNMTRAGSAFRLAGIVDATKVNSVEE
GRGCGAAIVLDNTQWLDHNSWELMHLLRKALPGMLIFAAFRPFSEMNLKH
TIALKAVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKG
NPRDVIHMMEDLFKEGFVEVNLGAVVILKELSENSLKIKDHTSAPVIAKY
DQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSMLTPSRENNYPAASSPTSS
NASDDAMVAPGSPAEGGGGGGERDDVDAQINTLVRVGLLERSSPESVRFV
ANYMVTVIYDMILHSKRQDMHK
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mRNA from alignment at Ecto-sp8_S_contig10745:20..6519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10745.1121.1 ID=mRNA_Ecto-sp8_S_contig10745.1121.1|Name=mRNA_Ecto-sp8_S_contig10745.1121.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6500bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10745:20..6519+ (Ectocarpus species8 EcLAC_412)
CAGGAGATGATGTCGAATGCCCACAACCCGGTGGGCACAAAAACGGTCCT CATCGAGGGAGAGCGCGGCAGCGGGAAAAGCATCCTTCTCTCGAAGGTCG GCTGGCTAGATTATGGCTCGCAGGCTGTTGCTGCTGTGTTTTCTTGTAAT TTGTGTGTAGGTTACGTGAAAATGTTCCGTTCCGGGACGCCTCGATGTAC ACTTTTCGCTTGGTTTGGCTGCCGCGACCACGCGCACCCCCCCTGCACAC AAAAAACTTCCACTTGGTTATGTCGCAAGCGAGGCTTAGAAAGGGGATCT TCTTTCGCGAAAAGCCTTCCAAACGGTTCACCGGCGGGGTTCGAACTCCT GACCAAGGCCAACAAGAATGTCTCTTGTTGACCATAGGGGCATATTGTTC TGTATTTAACTTAGTTCGTCTAAATCGCATTTGGCGAAATAGGGGCGTGC ACCAACCAGACATGACATTCGATGACTGTAAGAAATTGAAGCTCAACACG AATGAATATATCGTGTCTCGACGAACAGGCAGTCGGTATGATGGATGGGC ACGAGCTTCACACGTTCTGTTCCTCGGGAGACATGCACGAGAGGCATAAC AGCCTCTTCCCATTTCGACAGGTGAGACTGTGGCAACAGCGACAACGGGA CAAAGCAGTTCAGCATCGTGTAATGACACCCCGCGGTCATCACCTTTGTT CCGCCGCCGCCCCGTCCACTTCGTCGAAATCGCTCTGTCCAGGCATTGCA CGGATGAGAAGCTACTCGCTTGACGATAACAGCATTTATGTATCATGAAC ATATCTCCCCCCTCACACTTTCTTCGTCTCTCTCCACCCACCAATCAGAT CCTCTGCCAGCTTTTGGAGCTCGACCAAGATCGGCTCAACTGGTACGCCC CGGCCAATCGACCTCCTCCCGCTACCGGGCCGTCGCCAGCGGCGGCGGCG GCGGCGGCGGCTGCAGCGGCGGCGAGTTCAACTGCTGCGATGGCGGCCGC GGCGTCGGCGGCGGCTGCCGGGGCTGCGGGAATCGTCGAAAAGGGTGGAG AGGTGGCTTCAAGGCGAGAACAGCTGTTTGTTGTAGACTAGTTTTTGAGT TTTGGTTGGACATATGTATATGTATAGCCTTGCCAGTCTATTTGTATGGT GTAAATGTTGTTGATTGTTCGTTCGTTCGTTTTTGTCTCTGGGTGCTGTG TAGAAACTCGAACATCGTCACCTACCACAAATAATTATTTATACCTACCA CCGTGGTGTGTTTGCAAAAATAGGTTTCGACGAGCATCCACCCGAAGACG CAGCAGCATCGTCGCGGTCGGGTTGGGCATGCTAGGAGGAGGAGGAGGAG GAGGAGGAGGAGCAACGGAAGGAGGCGCGGTGGGCGACGCCAATTCGGGG ACGGATGGCGGCAGCGGTGCGCCGGCCCTTGCTGCGCCGCAGGCGGCGCC TCCTCCTCGCAATCGGCGCAGCAGCTGGGTCTCGAATGTGCCCGGTCGAA GGCGTAGCACCGACGCTGTGAGTCACCTTTCTGGCGAGAGTGCAAGGCAG GCACTCCACCAGTGATCATAATGTGGGGCCTTGGACAAGATTATGGGGTG TGTAGATGTTGTATACTTGCTAGTCGAGTCCATACGGTGACCGACCGCTC AGGTGCAAACGCTACCACCGAAGTTCGCACCCTCACCAAACCTCGGGCGA TGTGCCACACACTTGATTTCTCTTTCCATACGTGGACGACCTTCGACAGC AGTGTACTCGTTTGGAAGGTCGATTGTCATTCAATTGCCACCTTTGCTCC ACAGCGTTCCCCTGGAACGGCACGTTCTAGCAGTAATTCACTCGCCGTCG TTTCTTACTGCTGTGCTGCGGCTCTCTTGGCAGCCGAACGCCCTCAACCC CTACGAACCGACGGCAGCAAGGGGACATCTCGTCAAGAACCCCGGATTCA TGGCGCTCATGAAGGATCCCGAGCTCAGGAAGCATCTACCGCTGCTGAAC ATGATCCTGCCCCTATACAACGAGCAGGCAGCAGGGGCGGTGACGACAGG CGCACAGGTAAACAGCACTAGTAAAACAAGAGCATGGCGTGTAGACTCGT TCCCCGTGTAGACTCGAGGTCTAAAGTGCCCGCGGAATGACGAAAATTCA TCGCGGGGCTTTCTCTGAAAGGAACGACGGAATAGGTCTGACAACCGCGA GGCGTGCAGCAGTTTTAACGCCATCATCCCAACACGTGTACACATGTAGT TCGTCGAAGTTCGTCGGTGACATGATGCACGATGTGAGCAGTGATAACAA CCAGAAGCCCACACAGCGCAAAGTGATCGGTTTCTTTTACTGGCCGCGTG TTGCGCTACATGTTACGTAGGACACACATTCCAAGCTCCGGCGACTCGCC GACATGATCGCAGCGCTTCTTGTTCACCGGCTTGAGGCCTCCAAGATGGG AGCGGCAACAACTACCGCGGGCTACAGAAAGGTATGGTTGGGTACATCCG TTATTTTTGAAGATGGACAGATAGTGGTTCAGTTTGAGAAACTGAACGGA ATACTGAACAGGGCTAAAGCAGGAGGTGGAAAAGACGCCGTTTGTAGGTG AAGTAGCGCCAGAGCGCAAGTACTGATCTGATCTGAGGGGCACCTCTTGC CACCGAGAGTGGGTCTGAAAAAGTGACTTAACAATTCCCTCCGTAGGCTG CTGTTGATGGCAAACTAATTTGTTGGTTAGGACTCATTTCTTCTTTGGTT CCGAGGATCTTCTCATTTCGTACTCGGTACTATGTACCACCGTAGAAATA GATCTTTCGCGAGCACGCTTGAGGGACGGCACCACCGAATCCTCCCCGCG GTAAACAATCAGGGCGTGCGCCGCAGAAGAACTCTTGTGTGCCACCCTGG GTCAGAACTCTACGGTTTAGACGGAGATGAGGCAAGGGAGAAAGTGCTAG CGACGGTTGGGATGCCCAATCAAAGAGTCCACAACAACAAATCCAAAACA AGGGTCACACCTACTACGAGCAGGGTTGGAAGAAACGTAGGCAAGCGTGA ACCGGTGAACCATCGGCTCTCGGGATTCCTGTCTTTCGTTGCGACGACAA TTATTGAGACGAATCAACGGTATCGCACCATTATTTCTGTTGCACGGGTT GACCACACGTTTCGGGTTAGATACGCCTGTTTCTAATCGAGGAAAAGAGG TGATGTGATGATGTTCTGCGCCACCAAGCCGGACCGTTGTAGTCGATTTC AACACCTAATCCACCCCCCCCACAAATCTACCGGCACATGTACTTATTTT TTGTTTCAACATTGCGATATTACAATCATGGAGCTGTGCGTCCAACTTCA GACGACAATTACAGAACAAGAGGCAACTCGGATCTTTCGCAGCCCCGTCA ACCCACACTGCCTTCTCTGTTTTTTCGCAGTTTTTCTCCACGACGTGGAA ACATCTGATTACATCTCCGAGATACGCCCACCAGTCAGAAAAATATTCTC TTTCCCGCCTGCGTTCCCTCTTGTCCCCGTCAAGGTATGCGTTGATTGCA CCTCGGTACAATCCAAGATTGAAAAACTGTCCTCCACTTAGCATCGGCCA ATAGCACACACATGAGCATACACGGGCACAAGTCAATTCATGCAGCAATG AGCGTGACATCCCTTGTCCCGACAGCGCTCATTTTTCGCGCCCCACTTTC CTCCTCCCGCATACTTTCCACGGAGTTCAGGATGCGGCGGTGTCTGCAAC CCCGACGCCGGCCAACAACATGACAAGGGCGGGCTCGGCGTTCAGGTTGG CCGGAATCGTCGACGCCACGAAAGTGAACTCCGTGGAGGAGGGGAGGGGC TGCGGAGCGGCCATCGTTTTGGACAACACGCAATGGTTGGATCACAACAG GTACGTACTACATCGTATCTCTCTACGGTAGCTCTAGTCTGTAGCTGTTC CTCCTTGGCTGTGCTGGAAAATTTGTTCGGTTTCGGCTCGCGTTGTTTGT TCTATGGTGCAGGTTTGTCAGGAGTTCGTCGTTCGGATGGGGCGCGATCG TAACAGTGATGCGTATCGATACAGCGAGTTGAAGAGAACAACCATTAGCC ACACAGTACACTTTGTTTTTTTGAAGGTTTGCACATCTTCGTCTGTGAAA GACGGGCAGGACTATGAGAGAGCACATGCGGTGAATGCCACGCACACGAG GAGCCACGCTGGTTTCGCCTCTTCTGACCCAAGCAAACGCAAATAAAGTC GTCATTGTCGTTGTCATCGTCCCTGCTACGTGCTCGATTGACTCCACGGC TTGTGCGACGGGCAGCTGGGAGCTGATGCACCTCCTGAGGAAAGCTCTGC CCGGGATGCTCATCTTCGCCGCCTTCCGACCATTCTCGGAGATGAACCTC AAGCACACGATCGCCCTCAAGGCTGTCCCGGGAACGCTCAAGATGAACAT GGGCAGGCTGACGGCCACACAGGTGTGTGCGTCTCCCGCGTAAAGGAGAG TGCAGGCGGTACGACCGATGGCGACGACTCTGATGGTGATGGCCAGGTGG TGGTCGTAGCAACGGTTGTCACGCACTCGGGGTAAACGATTTCTCCCCCT CGAGCCGATGCACCGCTTCCTTGAACCGATTGACCAATCGGCTTTGCATG AAAGGGGTAGGTTCCCTTGAAGTACACAGAGATTGGTGGTACATGCACTA AGGAGTTTTGCTCCGAGACAACGGACGGCCCCACCACTATGTCGATTGTT GCTGCTCCAGGAACACCGTTGTAGCTGCTCCATCTTCGAACGACATCGCC CGCAATGAACCCCGTTTGATACGCTTGCCCCTTTGCCTCTTGCCTTTTGG TCATGAAACGCCCCAACCAGGTGATGCTCATTTTGTCCGACAGCTTCGGA GTGCAGAGGACAAGTGAAGAGCTCCTGGAATTTCTCGAGGTACACTTCTG CACAGTATATCCATGACACTCTTGCCGTACAACCGAACGATAAGCCTTAG GGTTTTTGGGCAAGAATAACTGAAGTGAGTGGTGTACAGGGGGACCAACA CACTGCCTCTAGAATGGAAACACTAAACTTGAGCAACAACTCAAACATGT CGCGTTTTTAGATGCTAATGTGTGTTGGCTGTGCCTACAGGTAACCGCCA AGGGAAACCCTCGAGACGTGATCCACATGATGGAGGATCTTTTTAAGGAG GGGTTCGTGGAGGTTAACCTGGGCGCCGTGGTCATTCTCAAAGAACTTTC GGAGAACTCTCTCAAAATCAAGGTGGGCGCGTACGTGTGCTGGCTGCGAG GATGTAGACAACGTCGTGGGGATTCAGGGAGAAAAGAGAGTGGGGAGCGT AGCTGAGAGCTGTCTCAGGTTGCCATGAACACGTTGTTCACTAAAAAATA TATGCTACGTCTCGGCTTTTCTAGACTACGTGCGACGTGAAAAAAAAAGG TTATTCTACCTCTACGTGCCTTCTTCCTTTTTCCGCACCCAACAGAAACG CCTCTGACAATTTCGACGGTTTCAATCATCTGCATCGGCTAATGTCTGCC TAGAACAACTTGCTCTCTACTTCTACGTGCCTTGCCGCACACCACGCCCC CCGCTTCCCGTAGGATCGCAATTCGCCTCTCCTCTCTCTCACCCCCGTTC TATATATCCTTCCGGATTTCCTACCGAAACAGGATCATACTTCGGCGCCC GTGATCGCCAAGTACGACCAGTTGACCAGAGGAACGCAACAGCTTGTGCA AGCCGCCGCGGTGATCGGACAGGAGGTGGGAGTGTTTTCCTTTTGCGTTG ACGGCGAGAAGAGAGAGGGAGGAAACTATTAGGGTGGCCTCAAGGTAAAC AGCCACCTTGCCGTGGTCTTTCGCCAAGATCTACGATATTTAGGGTTGGG TGCTGAACTCGTGCATGTGCTACAACACGTTAGAACTACAAGGCGGTTCC AAGGAATCGTCTGAGAAGGTACCAGTACCGCCAGCAGTGCAACCGCTTGT TTAACGGAGGAGGGGGAGGCGCACAAACACGAGCCCTTTCCGAGAGTTGG GGAGACCGCGAGAACACTGTAAAGTCCTGTGATACTAGCGCCATGCCCGA TGCAGAATCAGTCGGCGGCCCTCCTAGCCACGAGCAGCTCCTTCCTTGTT TCTGGTTTCAATGAATATCAACAACTCCCGAACCGTGTGGATAGGTCCCC CTCGACCTGCTCGTGGACGTCCACTCCATGCTGACGCCTTCCCGGGAGAA CAATTACCCGGCGGCCTCATCGCCGACGTCTTCTAATGCGTCAGACGACG CCATGGTGGCGCCCGGCTCTCCGGCCGAGGGGGGAGGGGGGGGTGGGGAG AGAGACGACGTGGATGCGCAGATCAACACGCTGGTGAGGGTGGGGCTTCT GGAGAGGAGTTCCCCGGAGTCGGTGAGGTTCGTGGCGAACTACATGGTGA CGGTAATCTACGACATGATTCTGCACTCCAAGAGGCAGGACATGCACAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10745:20..6519+

>mRNA_Ecto-sp8_S_contig10745.1121.1 ID=mRNA_Ecto-sp8_S_contig10745.1121.1|Name=mRNA_Ecto-sp8_S_contig10745.1121.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1866bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10745:20..6519+ (Ectocarpus species8 EcLAC_412)
ATGATGTCGAATGCCCACAACCCGGTGGGCACAAAAACGGTCCTCATCGA
GGGAGAGCGCGGCAGCGGGAAAAGCATCCTTCTCTCGAAGGCAGTCGGTA
TGATGGATGGGCACGAGCTTCACACGTTCTGTTCCTCGGGAGACATGCAC
GAGAGGCATAACAGCCTCTTCCCATTTCGACAGATCCTCTGCCAGCTTTT
GGAGCTCGACCAAGATCGGCTCAACTGGTACGCCCCGGCCAATCGACCTC
CTCCCGCTACCGGGCCGTCGCCAGCGGCGGCGGCGGCGGCGGCGGCTGCA
GCGGCGGCGAGTTCAACTGCTGCGATGGCGGCCGCGGCGTCGGCGGCGGC
TGCCGGGGCTGCGGGAATCGTCGAAAAGGGTGGAGAGGTGGCTTCAAGGC
GAGAACAGCTGTTTCGACGAGCATCCACCCGAAGACGCAGCAGCATCGTC
GCGGTCGGGTTGGGCATGCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAGC
AACGGAAGGAGGCGCGGTGGGCGACGCCAATTCGGGGACGGATGGCGGCA
GCGGTGCGCCGGCCCTTGCTGCGCCGCAGGCGGCGCCTCCTCCTCGCAAT
CGGCGCAGCAGCTGGGTCTCGAATGTGCCCGGTCGAAGGCGTAGCACCGA
CGCTCCGAACGCCCTCAACCCCTACGAACCGACGGCAGCAAGGGGACATC
TCGTCAAGAACCCCGGATTCATGGCGCTCATGAAGGATCCCGAGCTCAGG
AAGCATCTACCGCTGCTGAACATGATCCTGCCCCTATACAACGAGCAGGC
AGCAGGGGCGGTGACGACAGGCGCACAGGACACACATTCCAAGCTCCGGC
GACTCGCCGACATGATCGCAGCGCTTCTTGTTCACCGGCTTGAGGCCTCC
AAGATGGGAGCGGCAACAACTACCGCGGGCTACAGAAAGGATGCGGCGGT
GTCTGCAACCCCGACGCCGGCCAACAACATGACAAGGGCGGGCTCGGCGT
TCAGGTTGGCCGGAATCGTCGACGCCACGAAAGTGAACTCCGTGGAGGAG
GGGAGGGGCTGCGGAGCGGCCATCGTTTTGGACAACACGCAATGGTTGGA
TCACAACAGCTGGGAGCTGATGCACCTCCTGAGGAAAGCTCTGCCCGGGA
TGCTCATCTTCGCCGCCTTCCGACCATTCTCGGAGATGAACCTCAAGCAC
ACGATCGCCCTCAAGGCTGTCCCGGGAACGCTCAAGATGAACATGGGCAG
GCTGACGGCCACACAGGTGATGCTCATTTTGTCCGACAGCTTCGGAGTGC
AGAGGACAAGTGAAGAGCTCCTGGAATTTCTCGAGGTAACCGCCAAGGGA
AACCCTCGAGACGTGATCCACATGATGGAGGATCTTTTTAAGGAGGGGTT
CGTGGAGGTTAACCTGGGCGCCGTGGTCATTCTCAAAGAACTTTCGGAGA
ACTCTCTCAAAATCAAGGATCATACTTCGGCGCCCGTGATCGCCAAGTAC
GACCAGTTGACCAGAGGAACGCAACAGCTTGTGCAAGCCGCCGCGGTGAT
CGGACAGGAGGTCCCCCTCGACCTGCTCGTGGACGTCCACTCCATGCTGA
CGCCTTCCCGGGAGAACAATTACCCGGCGGCCTCATCGCCGACGTCTTCT
AATGCGTCAGACGACGCCATGGTGGCGCCCGGCTCTCCGGCCGAGGGGGG
AGGGGGGGGTGGGGAGAGAGACGACGTGGATGCGCAGATCAACACGCTGG
TGAGGGTGGGGCTTCTGGAGAGGAGTTCCCCGGAGTCGGTGAGGTTCGTG
GCGAACTACATGGTGACGGTAATCTACGACATGATTCTGCACTCCAAGAG
GCAGGACATGCACAAG
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