mRNA_Ecto-sp8_S_contig10736.1110.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10736.1110.1
Unique NamemRNA_Ecto-sp8_S_contig10736.1110.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10736.1110.1 vs. uniprot
Match: Q8QNN0_ESV1K (EsV-1-31 n=2 Tax=root TaxID=1 RepID=Q8QNN0_ESV1K)

HSP 1 Score: 231 bits (588), Expect = 1.670e-72
Identity = 233/252 (92.46%), Postives = 239/252 (94.84%), Query Frame = 1 
Query:    1 MVHRLHLILSIYEIERLIREKGADVNLKDIDGSTALHVSRSSTVARTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADNVGKTLLMKKARCFYVFRLLRPLLALNPSVFLKDNDGKTALDFTVEEGVKEHLIRYGRDQNWRRRKTLVLLREKTRVFVAKEDCVLRTVGLPTGIFRGVLAFL 756
            MV RLHLI+SIYEI RLIRE+GADVN KDIDGSTALHVSRSSTV     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S DNVGKTLLMKKARCFYVFRLLRPLLALNPSVFLKDN+G+TALDFTVEE VK HLIRYGRDQNWRRRKTL+LLREKTRVFVAKEDCVLRTVGLPTGIFR +LAFL
Sbjct:    1 MVPRLHLIVSIYEIARLIREQGADVNRKDIDGSTALHVSRSSTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSVDNVGKTLLMKKARCFYVFRLLRPLLALNPSVFLKDNEGRTALDFTVEEEVKAHLIRYGRDQNWRRRKTLILLREKTRVFVAKEDCVLRTVGLPTGIFRSILAFL 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10736.1110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNN0_ESV1K1.670e-7292.46EsV-1-31 n=2 Tax=root TaxID=1 RepID=Q8QNN0_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10736contigEcto-sp8_S_contig10736:1698..2456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score238.0
Seed ortholog evalue4.7e-60
Seed eggNOG ortholog2880.D8LP68
Model size759
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143168.4674313-CDS-Ecto-sp8_S_contig10736:1697..24561681143168.4674313-CDS-Ecto-sp8_S_contig10736:1697..2456Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10736 1698..2456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10736.1110.1prot_Ecto-sp8_S_contig10736.1110.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10736 1698..2456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10736.1110.1

>prot_Ecto-sp8_S_contig10736.1110.1 ID=prot_Ecto-sp8_S_contig10736.1110.1|Name=mRNA_Ecto-sp8_S_contig10736.1110.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=253bp
MVHRLHLILSIYEIERLIREKGADVNLKDIDGSTALHVSRSSTVARTLIE
YGADVNAKNSRGMSALHRARNIGVAKVLLEHGAFVNAVDNYGNTPLHLCN
DTQMVNLLLRHGASITHRNMKGETPIHMSTYGSKVIALAKAGADIDSADN
VGKTLLMKKARCFYVFRLLRPLLALNPSVFLKDNDGKTALDFTVEEGVKE
HLIRYGRDQNWRRRKTLVLLREKTRVFVAKEDCVLRTVGLPTGIFRGVLA
FL*
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mRNA from alignment at Ecto-sp8_S_contig10736:1698..2456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10736.1110.1 ID=mRNA_Ecto-sp8_S_contig10736.1110.1|Name=mRNA_Ecto-sp8_S_contig10736.1110.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=759bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10736:1698..2456+ (Ectocarpus species8 EcLAC_412)
ATGGTGCACAGGTTACACCTGATCCTTAGCATCTACGAGATTGAGCGGTT
GATCAGGGAAAAAGGCGCGGACGTCAATCTGAAAGATATAGACGGCAGCA
CGGCTCTCCACGTTTCGCGGTCTTCGACCGTCGCTCGTACTCTGATCGAG
TATGGTGCCGACGTCAACGCCAAAAATTCCAGAGGGATGTCTGCACTTCA
CCGTGCTCGCAACATCGGCGTGGCCAAAGTATTGCTTGAACACGGCGCTT
TCGTCAACGCGGTGGATAACTACGGCAACACACCGCTTCATCTCTGCAAC
GATACGCAGATGGTGAACCTGTTGCTGCGTCACGGTGCATCAATTACCCA
TCGCAACATGAAGGGAGAGACACCGATCCACATGTCGACGTACGGCTCGA
AGGTTATCGCCTTGGCGAAGGCCGGTGCTGACATAGATTCGGCGGACAAC
GTGGGGAAAACTCTGTTGATGAAGAAAGCCAGGTGTTTTTATGTGTTCCG
ACTCCTCCGACCGCTTCTGGCCCTCAACCCCTCCGTATTCCTAAAAGACA
ACGATGGGAAGACGGCACTAGATTTCACCGTCGAGGAAGGGGTGAAAGAG
CATTTGATTCGGTACGGGAGAGACCAGAACTGGCGTCGTAGGAAGACGCT
GGTTCTCTTGAGGGAGAAGACTCGGGTTTTTGTTGCAAAGGAGGACTGCG
TGCTTAGGACGGTCGGGTTACCCACTGGTATTTTCAGGGGTGTTCTGGCT
TTCCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10736:1698..2456+

>mRNA_Ecto-sp8_S_contig10736.1110.1 ID=mRNA_Ecto-sp8_S_contig10736.1110.1|Name=mRNA_Ecto-sp8_S_contig10736.1110.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10736:1698..2456+ (Ectocarpus species8 EcLAC_412)
ATGGTGCACAGGTTACACCTGATCCTTAGCATCTACGAGATTGAGCGGTT
GATCAGGGAAAAAGGCGCGGACGTCAATCTGAAAGATATAGACGGCAGCA
CGGCTCTCCACGTTTCGCGGTCTTCGACCGTCGCTCGTACTCTGATCGAG
TATGGTGCCGACGTCAACGCCAAAAATTCCAGAGGGATGTCTGCACTTCA
CCGTGCTCGCAACATCGGCGTGGCCAAAGTATTGCTTGAACACGGCGCTT
TCGTCAACGCGGTGGATAACTACGGCAACACACCGCTTCATCTCTGCAAC
GATACGCAGATGGTGAACCTGTTGCTGCGTCACGGTGCATCAATTACCCA
TCGCAACATGAAGGGAGAGACACCGATCCACATGTCGACGTACGGCTCGA
AGGTTATCGCCTTGGCGAAGGCCGGTGCTGACATAGATTCGGCGGACAAC
GTGGGGAAAACTCTGTTGATGAAGAAAGCCAGGTGTTTTTATGTGTTCCG
ACTCCTCCGACCGCTTCTGGCCCTCAACCCCTCCGTATTCCTAAAAGACA
ACGATGGGAAGACGGCACTAGATTTCACCGTCGAGGAAGGGGTGAAAGAG
CATTTGATTCGGTACGGGAGAGACCAGAACTGGCGTCGTAGGAAGACGCT
GGTTCTCTTGAGGGAGAAGACTCGGGTTTTTGTTGCAAAGGAGGACTGCG
TGCTTAGGACGGTCGGGTTACCCACTGGTATTTTCAGGGGTGTTCTGGCT
TTCCTGTGA
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