mRNA_Ecto-sp8_S_contig10735.1108.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10735.1108.1
Unique NamemRNA_Ecto-sp8_S_contig10735.1108.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10735.1108.1 vs. uniprot
Match: A0A6H5KGH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.600e-26
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:  196 GPAMGPWGLPWFCWPIFVLLIPYVILVTIGVLVIQYALPWCTTETPGGRETT 351
            GPAMGPWGLPWFCWPIFVLLIPYVILVTIGV+VIQYALPWCTTET GGR TT
Sbjct:   59 GPAMGPWGLPWFCWPIFVLLIPYVILVTIGVMVIQYALPWCTTETAGGRVTT 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10735.1108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGH8_9PHAE1.600e-2694.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10735contigEcto-sp8_S_contig10735:840..2748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size351
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_005190.1
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143168.390787-CDS-Ecto-sp8_S_contig10735:839..9651681143168.390787-CDS-Ecto-sp8_S_contig10735:839..965Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10735 840..965 -
1681143168.4075942-CDS-Ecto-sp8_S_contig10735:2523..27481681143168.4075942-CDS-Ecto-sp8_S_contig10735:2523..2748Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10735 2524..2748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10735.1108.1prot_Ecto-sp8_S_contig10735.1108.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10735 840..2748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10735.1108.1

>prot_Ecto-sp8_S_contig10735.1108.1 ID=prot_Ecto-sp8_S_contig10735.1108.1|Name=mRNA_Ecto-sp8_S_contig10735.1108.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=117bp
MPGPGGGGGFGGGGGGFGGGGGGFGGGFGGGRPGGFGGGPRGFGGPGWGF
GGPGFFGGGWPFIWGGPAMGPWGLPWFCWPIFVLLIPYVILVTIGVLVIQ
YALPWCTTETPGGRETT
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mRNA from alignment at Ecto-sp8_S_contig10735:840..2748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10735.1108.1 ID=mRNA_Ecto-sp8_S_contig10735.1108.1|Name=mRNA_Ecto-sp8_S_contig10735.1108.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1909bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10735:840..2748- (Ectocarpus species8 EcLAC_412)
ATGCCTGGGCCGGGGGGTGGGGGTGGGTTCGGTGGCGGTGGGGGTGGGTT
CGGTGGCGGTGGGGGCGGGTTCGGTGGCGGGTTTGGAGGCGGGCGGCCCG
GTGGCTTTGGGGGGGGACCGAGGGGGTTCGGCGGGCCTGGGTGGGGCTTC
GGAGGCCCCGGTTTTTTCGGCGGTGGATGGCCGTTCATCTGGGGCGGCCC
AGCCATGGGACCGTGGGGATTGCCAGTGAGTTCCTCCAGGCGCTTGTGTG
AAGTGTTTGGATGTATGCATACGCGTATGTTTGTGTATTGCTATGCATAT
AGCCTGCCAATCGTGGAACAGTTTTTGAACTTTCCCTCTCCGTTTCTTTT
CGAGCATGATATGCTCTCTCCCTCTCGGAACGGATGTCATCGACCGTATG
TAAGGTAGCATTTTTTGGATCTTTTGCCATGGGTGTTGCACCAGGCAAGA
GCAAGAAACGAGAAACGTGGGCGAGCACGCATGTCGACACCTATAGTAAG
CAAGTAGAGGGGATTGTGACAACGACCCTTTTTTTTAGTGTGAAACGACG
CGTTTTTACGCGCTTTTTCAAGACTTGTCGACAAGAAGCAAGTTTTCTGC
ATGCAAAGGTAGAGTCTGATTGGGCTGGTTTCTGTCATTTTTCAACGAGA
TTGTTCGTCTGGAAGGGTTCGCGGAATCGAATCGAGTCAACGGTGAACAA
AAAATCCCTTAATAACGAGGTACCGTTGAATGAACCGGTCAGCAGCTAGC
CGAAATGATGAAAAGGAGACACCCACACACCTCTTCTCCGAAACCGTTCT
AATTCGATGCTTTTTTTTGGCGTGTTTTTTGGTGCACGGTACCCGGGAGC
GGTCCTGGTGATGTGTGTCGGGCGATATATATATTGCGCCCCCAAAACTG
AACAAAGAAAAAAACAATAACGCAGCATCACACACAGAAAACATTTCATA
AAATATTTCTTGTTTCGCCCTTGTTGCAGATTGAAAAATACCCAACCAAA
GACGCAAGATCATACACAACCTACATGTACATGTAATATTTGGTGTTTCG
CCCGTGTTGCAGCTTATTCTATAACGGGGGCTGATGGCCGAGGCCGTGCC
ACAGCAGAGAGTTTTTTTTTGTCCACAACGAGTCTACCGTCCGTCGCTGC
AAGCGGTTCGCAACCCGTTGTCGCCGTGCGTACATCGGCCACAGCCTTGA
GCTTGATTGCAACAGGCGTTACAATACCGCTATTGAGGGCATCGCCGCTA
AACCGGATAGGCAAGTCATGTAGTATGTAGGTTTGACTACCGAGGTGCAT
GCGCTCCACGAGATTTTGGAACCGCTGTTCAGGGCATCCCTCTAAACAGG
GAGGAACCGCTAAACCGGGACCACGACAGTATGGTGTTTTCTCTCTCTGT
TCCCGCTCTCGGAAACGGTTGGGTCGGCCGCGTTCCGAGCGGATACGCGG
ATTGGAGGGGGGGGACTGCTGTGTGCGCTCGCGCGCAAATTATCCCGGAC
CCTTCCCTATTTGCGTAGCACCGTAGCGAGCTCCATGTGTGTGAGAATCA
CGCAATGCTTTCTTCTCTGCCACATCAGCACCCGTCCATCGCGGAAAGAA
AACAGGAGATTTAGCTTGTCATTCGTCACCCCGCGTTCGCTCGTTTTTTC
GACATATGTGTGTGTGTGTGTTTTTTTAAAACTTTTTCACAGCAGTAGTA
CAATTGAACACGAGAATCGTCTCTGCCTGTTTTTGCTGGCACCGCCGCCG
TCTCGTTTTTTCTTGTTCTTTTTCCTTCCAAAGTGGTTCTGCTGGCCGAT
CTTCGTGCTCTTGATCCCGTACGTGATCTTGGTGACGATCGGGGTGTTGG
TGATCCAGTACGCCCTCCCGTGGTGCACGACGGAAACGCCTGGCGGCCGC
GAAACGACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10735:840..2748-

>mRNA_Ecto-sp8_S_contig10735.1108.1 ID=mRNA_Ecto-sp8_S_contig10735.1108.1|Name=mRNA_Ecto-sp8_S_contig10735.1108.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10735:840..2748- (Ectocarpus species8 EcLAC_412)
ATGCCTGGGCCGGGGGGTGGGGGTGGGTTCGGTGGCGGTGGGGGTGGGTT
CGGTGGCGGTGGGGGCGGGTTCGGTGGCGGGTTTGGAGGCGGGCGGCCCG
GTGGCTTTGGGGGGGGACCGAGGGGGTTCGGCGGGCCTGGGTGGGGCTTC
GGAGGCCCCGGTTTTTTCGGCGGTGGATGGCCGTTCATCTGGGGCGGCCC
AGCCATGGGACCGTGGGGATTGCCATGGTTCTGCTGGCCGATCTTCGTGC
TCTTGATCCCGTACGTGATCTTGGTGACGATCGGGGTGTTGGTGATCCAG
TACGCCCTCCCGTGGTGCACGACGGAAACGCCTGGCGGCCGCGAAACGAC
G
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