mRNA_Ecto-sp8_S_contig106839.1056.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106839.1056.1
Unique NamemRNA_Ecto-sp8_S_contig106839.1056.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: UPI0006C93E70 (histone H2B.1/H2B.2 n=5 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C93E70)

HSP 1 Score: 187 bits (476), Expect = 2.960e-59
Identity = 107/130 (82.31%), Postives = 115/130 (88.46%), Query Frame = 1 
Query:   10 MPPK-SGKSIKKSAAAVSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            MPPK SGK++KK+  AV +    +KG  + K    KKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVND+FERIA+EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    1 MPPKASGKAVKKAGKAVKNI---TKGDKKKK---HKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 124
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BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: A0A0K2UN86_LEPSM (Histone H2B n=5 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2UN86_LEPSM)

HSP 1 Score: 186 bits (473), Expect = 8.490e-59
Identity = 108/130 (83.08%), Postives = 112/130 (86.15%), Query Frame = 1 
Query:   10 MPPKS-GKSIKKSAAAVSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            MPPKS GK+ KK+  A  D  K    P   K  RS KRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVND+FERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    1 MPPKSTGKAAKKAGKAQKDITK----PAGKK--RSHKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 124
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BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: A0A0C9RC16_9HYME (Histone H2B n=67 Tax=Hymenoptera TaxID=7399 RepID=A0A0C9RC16_9HYME)

HSP 1 Score: 186 bits (472), Expect = 1.170e-58
Identity = 105/130 (80.77%), Postives = 112/130 (86.15%), Query Frame = 1 
Query:   10 MPPK-SGKSIKKSAAAVSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            MPPK SGK++KK+  A  +  K  K        + +KRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVND+FERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    1 MPPKASGKAVKKAGKAQKNITKSDK-------KKKRKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
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BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: UPI00158A3387 (histone H2B-like n=7 Tax=Braconidae TaxID=7402 RepID=UPI00158A3387)

HSP 1 Score: 186 bits (472), Expect = 1.210e-58
Identity = 104/130 (80.00%), Postives = 112/130 (86.15%), Query Frame = 1 
Query:   10 MPPK-SGKSIKKSAAAVSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            MPPK SGK++KKS  A  +  K        K  + +KRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVND+FERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    1 MPPKPSGKAVKKSGKAQKNISKSD------KTKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 124
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BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: UPI001CA9307C (histone H2B-like n=9 Tax=Cynipoidea TaxID=40307 RepID=UPI001CA9307C)

HSP 1 Score: 186 bits (473), Expect = 1.510e-58
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 1 
Query:    7 TMPPK-SGKSIKKSAAAVSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            TMPPK SGK++KK+  A  +  K  K        + +KRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVND+FERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:   19 TMPPKASGKAVKKAGKAQKNITKTDK-------KKKRKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 142
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: A0A195BP63_9HYME (Histone H2B n=24 Tax=Aculeata TaxID=7434 RepID=A0A195BP63_9HYME)

HSP 1 Score: 186 bits (471), Expect = 1.660e-58
Identity = 106/133 (79.70%), Postives = 114/133 (85.71%), Query Frame = 1 
Query:   10 MPPK-SGKSIKKSAAA---VSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            MPPK SGK++KK+  A   +S  +KK K          +KRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVND+FERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    1 MPPKASGKAVKKAGKAQKNISKTDKKKK----------RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: A0A0L7RBP8_9HYME (Histone H2B n=7 Tax=Endopterygota TaxID=33392 RepID=A0A0L7RBP8_9HYME)

HSP 1 Score: 186 bits (471), Expect = 1.660e-58
Identity = 106/133 (79.70%), Postives = 114/133 (85.71%), Query Frame = 1 
Query:   10 MPPK-SGKSIKKSAAA---VSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            MPPK SGK++KK+  A   +S  +KK K          +KRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVND+FERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    1 MPPKASGKAVKKAGKAQKNISKSDKKKK----------RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: A0A195C505_9HYME (Histone H2B n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A195C505_9HYME)

HSP 1 Score: 187 bits (476), Expect = 3.070e-58
Identity = 107/134 (79.85%), Postives = 115/134 (85.82%), Query Frame = 1 
Query:    7 TMPPK-SGKSIKKSAAA---VSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            TMPPK SGK++KK+  A   +S  +KK K          +KRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVND+FERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:   74 TMPPKASGKAVKKAGKAQKNISKTDKKKK----------RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 197
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BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: A0A834MU82_VESGE (Histone H2B n=4 Tax=Endopterygota TaxID=33392 RepID=A0A834MU82_VESGE)

HSP 1 Score: 185 bits (469), Expect = 3.340e-58
Identity = 106/133 (79.70%), Postives = 114/133 (85.71%), Query Frame = 1 
Query:   10 MPPK-SGKSIKKSAAA---VSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            MPPK SGK++KK+  A   +S  +KK K          +KRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVND+FERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    1 MPPKTSGKAMKKAGKAQKNISKTDKKKK----------RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Match: A0A3Q2ZF61_HIPCM (Histone H2B n=4 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2ZF61_HIPCM)

HSP 1 Score: 185 bits (469), Expect = 3.450e-58
Identity = 95/106 (89.62%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:   79 KGPGRPKGGRSKKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 396
            K PG+P   R K RKESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA+EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:   19 KAPGKPGRRRKKGRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106839.1056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0006C93E702.960e-5982.31histone H2B.1/H2B.2 n=5 Tax=Copidosoma floridanum ... [more]
A0A0K2UN86_LEPSM8.490e-5983.08Histone H2B n=5 Tax=Lepeophtheirus salmonis TaxID=... [more]
A0A0C9RC16_9HYME1.170e-5880.77Histone H2B n=67 Tax=Hymenoptera TaxID=7399 RepID=... [more]
UPI00158A33871.210e-5880.00histone H2B-like n=7 Tax=Braconidae TaxID=7402 Rep... [more]
UPI001CA9307C1.510e-5880.15histone H2B-like n=9 Tax=Cynipoidea TaxID=40307 Re... [more]
A0A195BP63_9HYME1.660e-5879.70Histone H2B n=24 Tax=Aculeata TaxID=7434 RepID=A0A... [more]
A0A0L7RBP8_9HYME1.660e-5879.70Histone H2B n=7 Tax=Endopterygota TaxID=33392 RepI... [more]
A0A195C505_9HYME3.070e-5879.85Histone H2B n=1 Tax=Cyphomyrmex costatus TaxID=456... [more]
A0A834MU82_VESGE3.340e-5879.70Histone H2B n=4 Tax=Endopterygota TaxID=33392 RepI... [more]
A0A3Q2ZF61_HIPCM3.450e-5889.62Histone H2B n=4 Tax=Syngnathidae TaxID=72045 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106839contigEcto-sp8_S_contig106839:47..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score195.7
Seed ortholog evalue1.4e-47
Seed eggNOG ortholog69319.XP_008545618.1
Model size399
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Histone H2B
EggNOG OGs3A1HW@33154,3BQEI@33208,3D7NQ@33213,3SQBI@50557,41ZBP@6656,46IDR@7399,KOG1744@1,KOG1744@2759
Cds size390
COG Functional cat.B
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143164.4211216-UTR-Ecto-sp8_S_contig106839:46..551681143164.4211216-UTR-Ecto-sp8_S_contig106839:46..55Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig106839 47..55 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143164.4320014-CDS-Ecto-sp8_S_contig106839:55..4451681143164.4320014-CDS-Ecto-sp8_S_contig106839:55..445Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106839 56..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106839.1056.1prot_Ecto-sp8_S_contig106839.1056.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106839 56..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106839.1056.1

>prot_Ecto-sp8_S_contig106839.1056.1 ID=prot_Ecto-sp8_S_contig106839.1056.1|Name=mRNA_Ecto-sp8_S_contig106839.1056.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
MPPKSGKSIKKSAAAVSDPEKKSKGPGRPKGGRSKKRKESYAIYIYKVLK
QVHPDTGVSSKAMSIMNSFVNDLFERIAAEASRLAHYNKRSTITSREIQT
AVRLLLPGELAKHAVSEGTKAVTKYTSSK*
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mRNA from alignment at Ecto-sp8_S_contig106839:47..445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106839.1056.1 ID=mRNA_Ecto-sp8_S_contig106839.1056.1|Name=mRNA_Ecto-sp8_S_contig106839.1056.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=399bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106839:47..445+ (Ectocarpus species8 EcLAC_412)
ATCAGCACGATGCCACCCAAATCAGGAAAATCTATCAAGAAGTCTGCCGC
TGCTGTCTCTGACCCTGAGAAGAAGTCTAAGGGGCCGGGGAGGCCCAAGG
GCGGGAGGAGCAAGAAGAGGAAGGAGTCTTATGCCATCTACATCTACAAG
GTCTTGAAGCAGGTGCACCCCGACACTGGGGTCTCCTCCAAGGCAATGAG
CATCATGAACTCCTTCGTGAACGATCTGTTCGAGCGGATTGCTGCTGAGG
CCAGCCGCCTGGCACACTACAACAAGAGGTCCACCATCACCTCCAGGGAG
ATCCAGACCGCTGTCAGGCTCCTCTTGCCCGGGGAGTTGGCCAAGCACGC
CGTGTCGGAGGGGACCAAGGCCGTCACCAAGTACACCAGCTCGAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106839:47..445+

>mRNA_Ecto-sp8_S_contig106839.1056.1 ID=mRNA_Ecto-sp8_S_contig106839.1056.1|Name=mRNA_Ecto-sp8_S_contig106839.1056.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106839:47..445+ (Ectocarpus species8 EcLAC_412)
ATGCCACCCAAATCAGGAAAATCTATCAAGAAGTCTGCCGCTGCTGTCTC
TGACCCTGAGAAGAAGTCTAAGGGGCCGGGGAGGCCCAAGGGCGGGAGGA
GCAAGAAGAGGAAGGAGTCTTATGCCATCTACATCTACAAGGTCTTGAAG
CAGGTGCACCCCGACACTGGGGTCTCCTCCAAGGCAATGAGCATCATGAA
CTCCTTCGTGAACGATCTGTTCGAGCGGATTGCTGCTGAGGCCAGCCGCC
TGGCACACTACAACAAGAGGTCCACCATCACCTCCAGGGAGATCCAGACC
GCTGTCAGGCTCCTCTTGCCCGGGGAGTTGGCCAAGCACGCCGTGTCGGA
GGGGACCAAGGCCGTCACCAAGTACACCAGCTCGAAGTAA
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