mRNA_Ecto-sp8_S_contig10683.1055.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10683.1055.1
Unique NamemRNA_Ecto-sp8_S_contig10683.1055.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: D7G1F0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F0_ECTSI)

HSP 1 Score: 616 bits (1589), Expect = 2.040e-216
Identity = 311/315 (98.73%), Postives = 314/315 (99.68%), Query Frame = 1
Query:    7 AREALAKETMSSGSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKEREALGEWAEEENEEEYLVESDDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQAGAAGXXXXXXADEGGGDSDYEIREDGVQLTETDVVRRKTGTWATVTTEEDAVEGDGKKEGE 951
            AREALAKETMS+GSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKK+KEREALGEWAEEENEEEYLVESDDDLPFACLICRQGF+DPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQAGAAGXXXXXX DEGGGDSDYEIREDGVQLTETDVVRRKTGTWATVTTEEDAVEGDGKKEGE
Sbjct:  108 AREALAKETMSAGSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKRKEREALGEWAEEENEEEYLVESDDDLPFACLICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQAGAAGXXXXXXXDEGGGDSDYEIREDGVQLTETDVVRRKTGTWATVTTEEDAVEGDGKKEGE 422          
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: A0A6V1N7Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N7Z0_HETAK)

HSP 1 Score: 331 bits (849), Expect = 5.540e-106
Identity = 153/241 (63.49%), Postives = 189/241 (78.42%), Query Frame = 1
Query:   25 KETMSSGSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKEREALGEWAEEENEEE----YLVESDDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLR 735
            KE M    +++S+R  VP   AG AT+ TEIDT  DRD RAI E+N++LN EGAT D+  +Y G AGYKN+I+K E+QIGGNK+TGTQGPIRAP+ +RA CRFDYQPDICKDYKETGFCG+GDSCKF+HDR DYKSGW +EQE+E ++K  KE+E LGEWA +  E +    YL++SDD+LPFAC ICR+ F  P+ T CGHYFCE CA EHYKT+ RCA CGKQT G+FN AKK+ E+++
Sbjct:   39 KEGMQQAGVYESTREVVPTKYAGDATYTTEIDTATDRDARAIAERNLKLNAEGATNDETKIYRGQAGYKNYIEKKESQIGGNKYTGTQGPIRAPSNIRAICRFDYQPDICKDYKETGFCGYGDSCKFIHDRGDYKSGWQLEQEWEEQQKXXKEKEMLGEWASDAEEGDGDNPYLIDSDDELPFACHICREDFEQPVATLCGHYFCEECALEHYKTDKRCAICGKQTSGIFNQAKKIVERMK 279          
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: A0A836CP80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP80_9STRA)

HSP 1 Score: 296 bits (758), Expect = 9.260e-92
Identity = 162/301 (53.82%), Postives = 205/301 (68.11%), Query Frame = 1
Query:   52 FDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLN-EEGATTDKDG----LYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKEREA-LGEWAEE----------ENEEEYLVESDDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQAGAAGXXXXXXADEGGGDSDYEIREDGVQLTETDVVRRKTGTWATVT 906
            F S+R A+PV   GGAT Y E +T  DRD RAILE++I L  EEG     +G    +Y G AGYK HI K ++Q+ GNKHTGTQGPIRAP + R T  FDYQPDICKDYKETG+CGFGDSCKF+HDR DYK+GW  E+E+E K+KK++  +A L  W  E            +++Y V+ D DLPFAC ICR+ F DP+VTNCGH+FCE CA ++YK + RCAACGKQT GVFN A++L E + KKG+V    +AG   XXXXXX        ++ +RE+ V+LT   VV ++ G W TV+
Sbjct:   85 FKSTRDAMPVKTRGGATDYNESETAMDRDARAILERSIALQAEEGGEAGAEGGGPKVYKGQAGYKQHIAKSQSQVAGNKHTGTQGPIRAPQYARTTSVFDYQPDICKDYKETGYCGFGDSCKFMHDRGDYKAGWQQEREWEEKQKKRRAAQAALEAWGGEGERPVEDDDGSGDDKYAVDEDGDLPFACFICREAFRDPVVTNCGHHFCEACAMDNYKRSTRCAACGKQTGGVFNFARRLVEHMAKKGLV----KAGXXXXXXXXX--------EFAVREE-VELTAKSVVTKQQGGWQTVS 372          
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: F0WQ73_9STRA (Uncharacterized protein AlNc14C195G8554 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WQ73_9STRA)

HSP 1 Score: 276 bits (707), Expect = 3.120e-85
Identity = 134/232 (57.76%), Postives = 167/232 (71.98%), Query Frame = 1
Query:   49 LFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDG-LYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKEREALGEWAEEENEEEYLVESDDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKK 741
            + DS R  VP   AG AT+ T+IDT+ DRD RA+LEKNI LN+ G+  D  G LY G A YKN+I K E+QIG NK+TGTQGPIRA T+ R+ CRFDYQPD+CKDYKETGFCGFGD+CKFLHDR DYK GW +E+E++ K+  +++R   G+  +E +E EYLV  D D  FAC ICRQ F D + T CGH FCE+CA +H++   RC  CGKQT G FN A ++ +K  KK
Sbjct:   58 MIDSERQVVPHVYAGDATYETQIDTEKDRDARAVLEKNILLNKSGSIDDTSGKLYKGQAAYKNYIAKSESQIGMNKYTGTQGPIRAQTWARSICRFDYQPDVCKDYKETGFCGFGDTCKFLHDRGDYKGGWQIEKEYKEKQMAQRQRTLQGKTLDEVDENEYLVSDDADEQFACTICRQPFQDAVKTICGHIFCEKCALKHFRKTSRCFNCGKQTNGAFNVAWEIRKKEDKK 289          
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: A0A024GUG8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GUG8_9STRA)

HSP 1 Score: 274 bits (700), Expect = 3.430e-84
Identity = 132/240 (55.00%), Postives = 170/240 (70.83%), Query Frame = 1
Query:   25 KETMSSGSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDG-LYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKEREALGEWAEEENEEEYLVESDDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKK 741
            K+T+   ++ +S R  VP   AG AT+ T+IDT+ DRD RA++EKNI LN+ G+  D  G LY G A YKN+I K E+QIG NK+TGTQGPIRA T+ R+ CRFDYQPD+CKDYKETGFCGFGD+CKFLHDR DYK GW +E+E+  K+  +++R   G+  +E +E EYL+  DDD  FAC ICRQ F + + T CGH FCE+CA + ++   RC  CGKQT G FN A +  +K  KK
Sbjct:   50 KDTLGREAMIESERQVVPHVYAGDATYETQIDTEKDRDARAVMEKNISLNKAGSIDDTSGKLYKGQAAYKNYIAKSESQIGMNKYTGTQGPIRAQTWARSICRFDYQPDVCKDYKETGFCGFGDTCKFLHDRGDYKGGWQIEKEYNEKQMTQRQRIIQGKKIDEVDENEYLISDDDDEQFACTICRQPFQNAVKTICGHIFCEKCALKQFRKTSRCFNCGKQTNGAFNVASEHRQKEEKK 289          
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: A0A8J2X4S8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4S8_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.200e-83
Identity = 143/300 (47.67%), Postives = 193/300 (64.33%), Query Frame = 1
Query:   25 KETMSSGSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKEREALGEWAEEENEEEY------LVESDDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKT-NPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQAGAAGXXXXXXADEGGGDSDYEIREDGVQLTETDVVRRKTGTWATV 903
            ++ + + ++F SSRT  P+ + GGA  Y E+DT+AD+DTRA LE+N+ L +    T+ DG Y G AGYK+++KKDEAQIG NK+TGT+GPIRAP F+R TCRFDYQPD+CKDYK+TGFCG+GDSCKF+HDR DYK+GW +E EF+ +       + LG+   E++EEE       + +  D+LPFAC ICR  F DP+VT CGHYFC  CA +H+++ N RC  C KQT G+ +AA KL  K +  G   +  + G           +GG      + + G Q  E    R  TG W +V
Sbjct:   50 EDALQASAVFASSRTTAPIDHRGGAFAYGEVDTEADKDTRAQLERNLELQK----TEGDGTYRGQAGYKSYVKKDEAQIGANKYTGTKGPIRAPQFVRNTCRFDYQPDVCKDYKDTGFCGYGDSCKFMHDRGDYKTGWQLEAEFQRQXXXXXXXKMLGKLDGEDSEEERERDKFRIKDGGDELPFACHICRGPFRDPMVTQCGHYFCANCASDHFRSRNTRCPICEKQTYGMLSAAPKLRAKAKAVGGFEKFFELGLKVPDGDDDDGKGGEAYGARVAQPGAQRPEK---REATGYWQSV 342          
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: F0Y2F8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2F8_AURAN)

HSP 1 Score: 269 bits (688), Expect = 3.800e-83
Identity = 126/241 (52.28%), Postives = 170/241 (70.54%), Query Frame = 1
Query:   28 ETMSSGSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKEREALGEWAEEENEEEYLVES------DDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKT-NPRCAACGKQTQGVFNAAKKLTEK 729
            + M   ++F SSR   PV + GGA  + + DT  D+D RA+L +   L E GAT D+ GLY G AGYK+++K +EAQIG NK+TGT+GPIRAP+F+R TCRFDYQPD+CKDYK+TGFCG+GDSCKF+HDR DYK+GW +E E++ ++++ KERE LG+  E ++++E            ++LPFAC +CR  F DP++T CGHY+C  CA  H++  N RC  C KQT G+ NAA KL  K
Sbjct:    5 DRMQGAAVFASSRDVAPVEHRGGAFAHQDFDTDKDQDARALLRRKFELQEAGATNDETGLYQGQAGYKSYVKLNEAQIGANKYTGTKGPIRAPSFVRNTCRFDYQPDVCKDYKDTGFCGYGDSCKFMHDRGDYKTGWQLEAEYQRQKERDKEREMLGKLGEPDSDDEREANKFRVGAGAEELPFACHLCRGPFKDPMMTTCGHYYCASCASSHFREKNTRCPICEKQTYGMLNAAPKLRAK 245          
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: A0A7S2SX26_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SX26_9STRA)

HSP 1 Score: 270 bits (689), Expect = 5.900e-80
Identity = 143/296 (48.31%), Postives = 189/296 (63.85%), Query Frame = 1
Query:   91 GGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKEREALG---EWAEEENEEEYLVES-DDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMV-------TRKEQAGAAGXXXXXXADEGGGDSDYEIREDGVQLTETDVVRRKTGTWATVTTEEDAVEGDGKKE 945
            G AT  +EIDT  DRD RA+LEK+IRL  +  + D   +Y G AGYK  I+K E+QIGGNKHTGTQGPIRAP F RATCRFDYQPDICKDYK+TGFCGFGDSCKF+HDR +YK+GW +E+E+E K+ K+K+  A+G   +  E++ E++  V   DDDLPFAC +CR  F +P+VT CGH+FC +C  + Y+++P C  C K T G+FN ++KL     K G         + ++ AG A              SD  +R    +       +R  G+WATV  +ED  +G+G  E
Sbjct:   75 GSATAESEIDTARDRDARALLEKSIRLQGDSESVDGKKVYRGQAGYKQFIEKKESQIGGNKHTGTQGPIRAPAFFRATCRFDYQPDICKDYKDTGFCGFGDSCKFMHDRGNYKTGWQLEKEWEEKQAKRKQLLAMGLDPDGTEDDEEKQLRVNGEDDDLPFACFLCRGPFKEPVVTTCGHFFCHQCIAKSYESSPLCPVCTKNTAGIFNHSRKLEALANKHGGYDGLFRDSSGEKDAGTAAAPR----------SDQVVRPAPAR-------KRPQGSWATV--QEDEGDGEGVSE 351          
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: A0A485KGZ0_9STRA (Aste57867_4890 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGZ0_9STRA)

HSP 1 Score: 260 bits (664), Expect = 1.240e-78
Identity = 127/228 (55.70%), Postives = 171/228 (75.00%), Query Frame = 1
Query:   58 SSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDG-LYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKE--REALGEWAEEENEEE-YLVESDDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEK 729
            S+R +V  S AG AT+  +IDT+ D+D RAILEKN+++N EG   D  G +Y G AGYKN++ K E+QIG NK+TGTQGPIRA T+ R+ CRFDY PDICKDYKETGFCG+GD+CKFLHDR DYKSGW +++E++ KE+KK++  +E  G   + ++++E Y+++SDD+  FAC ICR  F + + T CGH+FCE+CA + YK +  C  C KQT GVFN AK+L E+
Sbjct:   64 STRQSVRQSYAGDATYELQIDTEKDKDARAILEKNVKMNAEG--NDLSGKIYQGQAGYKNYVTKKESQIGMNKYTGTQGPIRAQTWARSICRFDYAPDICKDYKETGFCGYGDNCKFLHDRGDYKSGWQIDKEWDEKERKKQQALKEGRGTGDDSDSDDEKYVIKSDDEEQFACTICRNPFTNAVETICGHFFCEKCALKRYKKSSLCFNCQKQTNGVFNVAKRLRER 289          
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Match: A0A6G0WHA5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHA5_9STRA)

HSP 1 Score: 260 bits (664), Expect = 1.540e-78
Identity = 131/232 (56.47%), Postives = 171/232 (73.71%), Query Frame = 1
Query:   49 LFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEGATTDKDG-LYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKEREALGEWAE----EENEEEYLVESDDDLPFACLICRQGFIDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEK 729
            L  S+R AV  + AG AT+  +IDT+ DRD RA+LEK+I+LN EG   D  G +Y G AGYK+++ K E+Q+G NK+TGTQGPIRA T+ R+ CRFDY PDICKDYKETGFCG+GD+CKFLHDR DYKSGW +++E+  KEK+K++  AL E  +    + ++E+Y++ SD+D  FAC ICRQ F + + T CGH+FCE+CA + YK +  C  C KQT GVFN AKKL EK
Sbjct:   62 LQTSTRQAVRQTYAGDATYELQIDTEKDRDARALLEKSIKLNAEG--NDLSGKIYQGQAGYKSYVTKKESQVGMNKYTGTQGPIRAQTWARSICRFDYAPDICKDYKETGFCGYGDNCKFLHDRGDYKSGWQIDKEWNEKEKRKQQ--ALLEGRDGGDSDSDDEKYVIPSDEDEQFACTICRQPFTNAVETICGHFFCEKCALKRYKKSSLCFNCRKQTNGVFNVAKKLREK 289          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10683.1055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1F0_ECTSI2.040e-21698.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1N7Z0_HETAK5.540e-10663.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CP80_9STRA9.260e-9253.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0WQ73_9STRA3.120e-8557.76Uncharacterized protein AlNc14C195G8554 n=1 Tax=Al... [more]
A0A024GUG8_9STRA3.430e-8455.00Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8J2X4S8_9STRA1.200e-8347.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y2F8_AURAN3.800e-8352.28Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2SX26_9STRA5.900e-8048.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485KGZ0_9STRA1.240e-7855.70Aste57867_4890 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WHA5_9STRA1.540e-7856.47Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10683contigEcto-sp8_S_contig10683:2657..6742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score605.1
Seed ortholog evalue1.8e-170
Seed eggNOG ortholog2880.D7G1F0
Preferred nameRNF113A
Model size1776
KEGG koko:K03661,ko:K13127,ko:K15696
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016020,GO:0016070,GO:0016071,GO:0016074,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022008,GO:0030154,GO:0030182,GO:0031323,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034247,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990904
Exons6
EggNOG free text desc.snoRNA splicing
EggNOG OGsCOG5152@1,KOG1813@2759
Cds size924
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10683.1055.1prot_Ecto-sp8_S_contig10683.1055.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10683 3476..6709 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143164.2866292-UTR-Ecto-sp8_S_contig10683:2656..34751681143164.2866292-UTR-Ecto-sp8_S_contig10683:2656..3475Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10683 2657..3475 -
1681143164.3925486-UTR-Ecto-sp8_S_contig10683:6709..67421681143164.3925486-UTR-Ecto-sp8_S_contig10683:6709..6742Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10683 6710..6742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143164.3032072-CDS-Ecto-sp8_S_contig10683:3475..37451681143164.3032072-CDS-Ecto-sp8_S_contig10683:3475..3745Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10683 3476..3745 -
1681143164.313047-CDS-Ecto-sp8_S_contig10683:4127..42801681143164.313047-CDS-Ecto-sp8_S_contig10683:4127..4280Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10683 4128..4280 -
1681143164.323382-CDS-Ecto-sp8_S_contig10683:5143..53081681143164.323382-CDS-Ecto-sp8_S_contig10683:5143..5308Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10683 5144..5308 -
1681143164.338195-CDS-Ecto-sp8_S_contig10683:5722..58331681143164.338195-CDS-Ecto-sp8_S_contig10683:5722..5833Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10683 5723..5833 -
1681143164.360623-CDS-Ecto-sp8_S_contig10683:6101..61831681143164.360623-CDS-Ecto-sp8_S_contig10683:6101..6183Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10683 6102..6183 -
1681143164.3804853-CDS-Ecto-sp8_S_contig10683:6566..67091681143164.3804853-CDS-Ecto-sp8_S_contig10683:6566..6709Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10683 6567..6709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10683.1055.1

>prot_Ecto-sp8_S_contig10683.1055.1 ID=prot_Ecto-sp8_S_contig10683.1055.1|Name=mRNA_Ecto-sp8_S_contig10683.1055.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=308bp
MSSGSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLNEEG
ATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRF
DYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKKKE
REALGEWAEEENEEEYLVESDDDLPFACLICRQGFIDPIVTNCGHYFCER
CAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQAGAAGG
GASAGADEGGGDSDYEIREDGVQLTETDVVRRKTGTWATVTTEEDAVEGD
GKKEGED*
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mRNA from alignment at Ecto-sp8_S_contig10683:2657..6742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10683.1055.1 ID=mRNA_Ecto-sp8_S_contig10683.1055.1|Name=mRNA_Ecto-sp8_S_contig10683.1055.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4086bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10683:2657..6742- (Ectocarpus species8 EcLAC_412)
TCGTTTGCCAGAGAGGCGTTAGCGAAGGAGACCATGTCTTCCGGGAGCCT GTTCGACTCCTCCAGGACGGCGGTGCCGGTGAGCAACGCGGGAGGGGCGA CGCACTACACCGAGATCGACACGCAGGCCGACAGGGACACCAGGGCTATC CTAGAGAAAAACATCCGCCTAAATGAGTGAGTTTCTGTCGGCGACGACTC CGTATCAATGTGTGCGTTGTCCTGACCAGTGCCGTCATGATGCTGCTGTT TTGGTGGGGCGTTTTGAGGGCCTGCCGCCAGGGTACTGGGCTACCATCGG TAATTTCTTGCCCTTAAGAAGACGTGGCATGGTAGGTGGCTGAAAAAAAA GAACAGCGCGATATCAAAGTCCACCCTGCAAACAGCTGGCCCACCACCCA ACTGGTATCCGCGTTTCTCGAAGTATGCTAAATACTATAGCTACCTCGGC GCTAATCCGCCTTCCAGTCTCACCAAATCTTCTCGAATCATCGTTGACAT GGTCTCTTCATTCATCCGCCGAATGTCTGGTTGTTCGGAACGGTCGCGGG TGCTTCCAGGGAAGGAGCGACAACTGACAAGGATGGGCTCTACCACGGAA TGGCGGGGTACAAAAACCACATCAAGAAAGACGAGGCTCAGGTAATCTCG ACAAAGAAAATTAATCGCACACCTCCACCGTGAAGTATTTGTGAGGGAAG CAGGCACCCGGCGCTATCCAGAATTTCAACATCTCGAGTGTTCTGTTTCA CGCTATTGCCAGCGGGTTGTTTTTGTGAAAACCCGTCATTGCTGATACTC TCATCATATTGTCCACATTTCTTGCGCTTGTGGTTGTTTGTCTTCGTCAT CATTTATTTTGTTCGTTGCTAACGCTGTTGACCCCCGCGGGGTAAACACG CGTTCTCAGATCGGAGGCAACAAGCACACCGGGACCCAGGGACCGATACG AGCGCCGACCTTCCTTCGAGCCACCTGTCGGTTCGACTACCAGCCTGACA TCTGCAAGGACTACAAGGAGGTGCGCGGCTTGCGCGAATTCCCGATGGGT GTGTTTGGTGCAAGTGGTCGTGATGGTGAACGACGCGGTACGATGCGTCG ATGTTTGTGTACCGCTGTTTATTTCTTCCACGATAGCTTGTCGCGCTCCA TGCAGGACCAACTCGTTGGTGCCGTAAAGTAGGGCGGGGGAAAGTTGCGC GATTTGTCGCCTTCGTTTCTAGATCTCGTGTGCAGCGCACGGATCGACCA CCGCTGTTGTGTGTGGTACGAGAAGGACGCATGTCTCATTGCCGGGCAAC TTGCCCCCCGCCCCCCGCCATCCCCGCTCTCATCGACCGTTGATTACAGT CATTGCTCACCGAATAGCTCATGATGACCGCTGCATGTCTTTTTTTCTCT CTCTCTCCTGCGCCAATGATTGGGCCACGCCTAGACGGGGTTCTGTGGGT TCGGTGACAGCTGTAAGTTCTTGCATGATCGAGCCGACTACAAGTCTGGG TGGGCGATGGAGCAGGAGTTCGAGGCTAAGGAGAAGAAGAAGAAGGAGAG GGAGGCACTCGGGGAGTGGGCGGAGGAGGAGAACGAGGAGGAATACTTGG TGAGTGGTTGGGTGTTTTCGTTGTGTGTGAGTTTTTTTTTTTCTGTGACG TTGTGGTGTGTTGTTGCCATTGTAGCTGCTGCTGCGGCCTGGAGGTTGTC GTGGTTGTTGTTGTTGCGGGCGTATTCTTGGTGTTGCTGTTAATTGTTGA TGTTGCTCTATTTACTGTTCCCCCTCTGTCGTACGTGATCTCTCTCTCTC TCTCTTCTCTCTCTCTCTCTCTGTCTCTCTCTCTGTCTCTCTCTCTGCCT CAGTTTTAAGAACCCCACATTTATGTTGAAGTCCTCGTGGATTTGCGTCT CCTTCAAGCCTCCCGTGGCCCTCTCCCTGTTCTCTCGCGTGCCAGCACAG CAATCGCCCATTGTTCTTCCTCAGAATCCTCGTCTGAAAATGTCTGTTAT CAATTTCTTACGTCCTTTCCGGACCCTCTTCTTGGTGGAAGCTCTTGCAC TTCGATTTCGTTATCCGGTTGCTTGGCAAATGCTCCTTCCGAGCGCCAGT AACCCGCATGCAGTCGCATGTTCTTCGGGCATCGCGTTTCCGCATGGTCC GCGCTTCAAAAGTCGATGTGCTTCAAGTCCGGACGCCCTGCGTTCCGTGC TGCAAACTTATCTCTGTCGTTGCAAAATTCCAACACCATGTTTAGGTTTT GCGAGAGACATCCACGGTGGAAGTAGCACCTGCAGGCGAGCGAAGCACAA AGGGCTTTGCTTGTGAGCGGAGTAGCGGAACCGCAGAACTTGATCTTCAC GCCCACGTCTTGGACGTTACCGTTGAGACAGACGTCTGACACGCACGGCT GACGAAGACGTACTGATATGCTCTAAATCCAGGCATCCTCTTTTTTTTTT CTTTTTCTGCAGGTGGAGAGCGACGACGATCTCCCTTTTGCGTGCCTGAT CTGCAGGCAGGGGTTCATTGACCCGATAGTCACAAATTGCGGCCACTACT TCTGTGAGCGGTGCGCCCAGGAGCACTACAAAACCAACCCCCGCTGCGCC GCTTGTGGAAAGCAGGTACGCGCCCGTCCACACCATCGCTTGTTTGGACT ATCTCGGGAGATAGCGTCTCTGCTTGTTTTTTGGCGCCGTTTGGTTTATC TTCATCTGTTGGACACGATTTGGTGTCTGGTCTGCGATTGCTGTATGCTT TGGTGGGCGTCGTCGAAGCAACGTCAATCCGTCTGAATCCCCGAATCCCA AGGATGCCTCGACAACCACCTCCCTGCATTTGTTTGGATTTTCTGTGGGT TTGATCACGTGGCTTTGCTCCTAGAGTTCGGGAGATCTGCTACTAACACA GTAGTCTCTCGAATTGTTTGCGCCAATAAGCCTACGTGCATTCTCCTTAC ACCCACCGACTGCACGCGTTGTTAACTGTGCTTGTTCTGCCATGCAGACC CAGGGCGTGTTCAATGCGGCCAAGAAGCTGACGGAAAAGCTTCGCAAGAA AGGAATGGTGACGAGAAAAGAGCAAGCCGGCGCAGCTGGCGGGGGTGCAT CAGCCGGTGCCGACGAGGGGGGGGGTGACAGCGACTACGAGATTCGCGAG GACGGGGTGCAGCTGACGGAAACGGACGTGGTGCGGCGAAAAACCGGGAC ATGGGCCACGGTGACCACAGAAGAAGACGCGGTCGAGGGAGACGGAAAAA AGGAAGGCGAAGATTAAATGCGCCTCTAGACTAGAGATTTTTTTTTTTTT TAATATGCATGCGATCACATAAAGAGTTCCCGTTGGAGATATTTTGCCGA GAGGGGTGTGTTGAAGTCTTTGCAGTGAGCCGGCTGGATTTGCAGGAGGC AGGCTGGGCTCATTGAGAGATGATGCCTGTTGGGAGTAGGTCTGTAACAT AGAAATGGATGCTCAGCAGCAACCATGGAGGGTATTTAGCTTAGACTACA CGTAGCGCAGATTTGATCGAAGCGTAGCTGAGGTCGCTTCGAGAATTCTT GTGACCGGCATGGGGGCTTGGGGTTGCGTAGAGTATGCGGTTTAGTTGGT CACGTCGAGAGAGTAACACCCATTGCAATACGTGAAGCACCGCTGTGCTG TTTGAGAACGTTTTGACTGTTTTCGTAAAGTGAAACATTTCGGTAAACCG AGGCATGGACTCGTGTGTTGAATGGTGTTTCGGCTTCTTGGTTCGCCCGG GCGGACACGTTGGCATGTGGTCAGTCAGTTTGGGTGTGTCGTGGGGTTGG ATTGCTTCCGTAATGTAGTCGTTCGATTCGATCTGGTTCTTTTGCGAGCG ACATCAGATGGCGCGTTGTCGTCCTGCTGGTGCTGTTGCCGTAGCGTTAC GCATGCAGCTTCTCTCTACCTTTGGTTGGCACATGTTGCTGTGCTCGTCT ACTGCTGCTAGACCTGGAGATGTCGGGAACGTGTGACAAATTGTTTCCGG TAAATATCAGTCCCTGTGCGCATGACGCTGCTTTCACGGGAGAAATGAAG ATCAAGTTTCGTGCCGTTGATGACCACCTTACGGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10683:2657..6742-

>mRNA_Ecto-sp8_S_contig10683.1055.1 ID=mRNA_Ecto-sp8_S_contig10683.1055.1|Name=mRNA_Ecto-sp8_S_contig10683.1055.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10683:2657..6742- (Ectocarpus species8 EcLAC_412)
ATGTCTTCCGGGAGCCTGTTCGACTCCTCCAGGACGGCGGTGCCGGTGAG
CAACGCGGGAGGGGCGACGCACTACACCGAGATCGACACGCAGGCCGACA
GGGACACCAGGGCTATCCTAGAGAAAAACATCCGCCTAAATGAGGAAGGA
GCGACAACTGACAAGGATGGGCTCTACCACGGAATGGCGGGGTACAAAAA
CCACATCAAGAAAGACGAGGCTCAGATCGGAGGCAACAAGCACACCGGGA
CCCAGGGACCGATACGAGCGCCGACCTTCCTTCGAGCCACCTGTCGGTTC
GACTACCAGCCTGACATCTGCAAGGACTACAAGGAGACGGGGTTCTGTGG
GTTCGGTGACAGCTGTAAGTTCTTGCATGATCGAGCCGACTACAAGTCTG
GGTGGGCGATGGAGCAGGAGTTCGAGGCTAAGGAGAAGAAGAAGAAGGAG
AGGGAGGCACTCGGGGAGTGGGCGGAGGAGGAGAACGAGGAGGAATACTT
GGTGGAGAGCGACGACGATCTCCCTTTTGCGTGCCTGATCTGCAGGCAGG
GGTTCATTGACCCGATAGTCACAAATTGCGGCCACTACTTCTGTGAGCGG
TGCGCCCAGGAGCACTACAAAACCAACCCCCGCTGCGCCGCTTGTGGAAA
GCAGACCCAGGGCGTGTTCAATGCGGCCAAGAAGCTGACGGAAAAGCTTC
GCAAGAAAGGAATGGTGACGAGAAAAGAGCAAGCCGGCGCAGCTGGCGGG
GGTGCATCAGCCGGTGCCGACGAGGGGGGGGGTGACAGCGACTACGAGAT
TCGCGAGGACGGGGTGCAGCTGACGGAAACGGACGTGGTGCGGCGAAAAA
CCGGGACATGGGCCACGGTGACCACAGAAGAAGACGCGGTCGAGGGAGAC
GGAAAAAAGGAAGGCGAAGATTAA
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