mRNA_Ecto-sp8_S_contig106826.1054.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106826.1054.1
Unique NamemRNA_Ecto-sp8_S_contig106826.1054.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106826.1054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106826contigEcto-sp8_S_contig106826:5..417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size414
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143164.2438037-CDS-Ecto-sp8_S_contig106826:4..4151681143164.2438037-CDS-Ecto-sp8_S_contig106826:4..415Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106826 5..415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106826.1054.1prot_Ecto-sp8_S_contig106826.1054.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106826 5..415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106826.1054.1

>prot_Ecto-sp8_S_contig106826.1054.1 ID=prot_Ecto-sp8_S_contig106826.1054.1|Name=mRNA_Ecto-sp8_S_contig106826.1054.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=137bp
DFIGKDLHDCGARSRRSLNWSTNGRHIRPLLHRDLHQSSVPPSDDRHLLS
ASAGVNEQWWQRNTFLNTRAHPAARCGKGQQHSGKQRPTNLRVTWATVLF
HDIVAGLVYAYVPITPPLVHRPIYCGPAKDTIHDISL
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mRNA from alignment at Ecto-sp8_S_contig106826:5..417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106826.1054.1 ID=mRNA_Ecto-sp8_S_contig106826.1054.1|Name=mRNA_Ecto-sp8_S_contig106826.1054.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=413bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106826:5..417+ (Ectocarpus species8 EcLAC_412)
GATTTCATCGGGAAGGATCTTCACGACTGCGGTGCCCGCTCTCGCCGCTC
TCTCAACTGGAGCACCAACGGCCGACACATCCGCCCTCTGCTACATAGGG
ATCTACATCAATCATCAGTACCGCCATCAGATGATCGGCACCTATTAAGC
GCTTCCGCCGGCGTAAATGAACAATGGTGGCAGAGAAACACGTTTCTAAA
TACTCGAGCCCATCCGGCAGCGCGGTGTGGAAAGGGACAACAGCACAGCG
GCAAACAGCGCCCAACCAACCTCCGTGTTACGTGGGCAACCGTGTTATTT
CATGACATCGTTGCAGGTCTCGTATATGCGTATGTCCCGATTACTCCCCC
CCTCGTCCACCGCCCTATCTATTGTGGTCCTGCGAAAGACACCATACATG
ACATATCATTAGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106826:5..417+

>mRNA_Ecto-sp8_S_contig106826.1054.1 ID=mRNA_Ecto-sp8_S_contig106826.1054.1|Name=mRNA_Ecto-sp8_S_contig106826.1054.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106826:5..417+ (Ectocarpus species8 EcLAC_412)
GATTTCATCGGGAAGGATCTTCACGACTGCGGTGCCCGCTCTCGCCGCTC
TCTCAACTGGAGCACCAACGGCCGACACATCCGCCCTCTGCTACATAGGG
ATCTACATCAATCATCAGTACCGCCATCAGATGATCGGCACCTATTAAGC
GCTTCCGCCGGCGTAAATGAACAATGGTGGCAGAGAAACACGTTTCTAAA
TACTCGAGCCCATCCGGCAGCGCGGTGTGGAAAGGGACAACAGCACAGCG
GCAAACAGCGCCCAACCAACCTCCGTGTTACGTGGGCAACCGTGTTATTT
CATGACATCGTTGCAGGTCTCGTATATGCGTATGTCCCGATTACTCCCCC
CCTCGTCCACCGCCCTATCTATTGTGGTCCTGCGAAAGACACCATACATG
ACATATCATTA
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