mRNA_Ecto-sp8_S_contig106803.1053.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106803.1053.1
Unique NamemRNA_Ecto-sp8_S_contig106803.1053.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106803.1053.1 vs. uniprot
Match: D7G669_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G669_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.510e-31
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    7 KVRVRAVTELERVVFLSRERILVLACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHY 192
            K+RVRAVTELERVVFLSRERILVLACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHY
Sbjct: 1336 KMRVRAVTELERVVFLSRERILVLACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHY 1397
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BLAST of mRNA_Ecto-sp8_S_contig106803.1053.1 vs. uniprot
Match: A0A4D9DAX1_9STRA (Rhodanese domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.030e-8
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   28 TELERVVFLSRERILVL---ACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHY 192
            TEL R + L+ ERI+VL      +     G VKSNHHLTEL +MTFM+R+P +VTL++
Sbjct: 1537 TELARYIVLTPERIIVLEEAGRKARKAGQGRVKSNHHLTELARMTFMKREPDIVTLYF 1594
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BLAST of mRNA_Ecto-sp8_S_contig106803.1053.1 vs. uniprot
Match: W7U2B4_9STRA (Tbc1 domain family member 23 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.910e-8
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   31 ELERVVFLSRERILVL---ACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHY 192
            EL R + L+ ERI+VL      +     G VKSNHHLTEL +MTFM+R+P +VTL++
Sbjct: 1104 ELARYIVLTPERIIVLEEAGRKARKAGQGRVKSNHHLTELARMTFMKREPDIVTLYF 1160
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BLAST of mRNA_Ecto-sp8_S_contig106803.1053.1 vs. uniprot
Match: A0A7S2CM97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CM97_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.930e-8
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   13 RVRAVTELERVVFLSRERILVLAC--------PSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHY 192
            R+  +  L R++ ++++R+LVL          P    S   VKSNHHL+EL +MT +++DP +VTLHY
Sbjct:  122 RMSEIPSLPRIIIVTKDRLLVLQAIALDDGLPPPLLNSQATVKSNHHLSELSRMTLLKKDPDVVTLHY 189
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BLAST of mRNA_Ecto-sp8_S_contig106803.1053.1 vs. uniprot
Match: A0A7S2CN15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CN15_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.670e-7
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   13 RVRAVTELERVVFLSRERILVLAC--------PSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHY 192
            R+  +  L R++ ++++R+LVL          P    S   VKSNHHL+EL +MT +++DP +VTLHY
Sbjct:  309 RMSEIPSLPRIIIVTKDRLLVLQAIALDDGLPPPLLNSQATVKSNHHLSELSRMTLLKKDPDVVTLHY 376
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BLAST of mRNA_Ecto-sp8_S_contig106803.1053.1 vs. uniprot
Match: A0A7S1G6J7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6J7_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.380e-5
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   40 RVVFLSRERILVLACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHY 192
            R + LS++R+LVL          +VKSNHHLTE+ K+TF ++D + ++L+Y
Sbjct: 1223 RYLALSKDRLLVLQAHDVKLDTAIVKSNHHLTEIAKLTFSKKDKNKLSLYY 1273
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BLAST of mRNA_Ecto-sp8_S_contig106803.1053.1 vs. uniprot
Match: A0A7S2WNH3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNH3_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 9.040e-5
Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:  112 VKSNHHLTELQKMTFMRRDPSLVTLHY 192
            VKSNHHLTE+ KMT +++DPS+VT+HY
Sbjct: 1076 VKSNHHLTEVVKMTVLKKDPSIVTIHY 1102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106803.1053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G669_ECTSI3.510e-3198.39Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A4D9DAX1_9STRA1.030e-851.72Rhodanese domain-containing protein n=1 Tax=Nannoc... [more]
W7U2B4_9STRA4.910e-850.88Tbc1 domain family member 23 n=1 Tax=Nannochlorops... [more]
A0A7S2CM97_9STRA9.930e-839.71Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2CN15_9STRA1.670e-739.71Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1G6J7_9STRA1.380e-543.14Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2WNH3_9STRA9.040e-570.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106803contigEcto-sp8_S_contig106803:295..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score123.6
Seed ortholog evalue3.3e-26
Seed eggNOG ortholog2880.D7G669
Model size192
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
Cds size192
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143164.2080588-CDS-Ecto-sp8_S_contig106803:294..4861681143164.2080588-CDS-Ecto-sp8_S_contig106803:294..486Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106803 295..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106803.1053.1prot_Ecto-sp8_S_contig106803.1053.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106803 295..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106803.1053.1

>prot_Ecto-sp8_S_contig106803.1053.1 ID=prot_Ecto-sp8_S_contig106803.1053.1|Name=mRNA_Ecto-sp8_S_contig106803.1053.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=64bp
KKKVRVRAVTELERVVFLSRERILVLACPSGPTSPGLVKSNHHLTELQKM
TFMRRDPSLVTLHY
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mRNA from alignment at Ecto-sp8_S_contig106803:295..486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106803.1053.1 ID=mRNA_Ecto-sp8_S_contig106803.1053.1|Name=mRNA_Ecto-sp8_S_contig106803.1053.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106803:295..486+ (Ectocarpus species8 EcLAC_412)
AAGAAGAAGGTGAGGGTCCGCGCGGTAACGGAACTCGAGCGCGTGGTCTT
CCTGTCGCGGGAGCGCATCTTGGTCCTCGCCTGCCCGTCCGGGCCCACGA
GCCCGGGGCTCGTGAAATCGAACCACCACCTTACCGAGCTGCAGAAGATG
ACCTTCATGAGAAGAGACCCGTCGCTGGTGACCCTGCACTAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106803:295..486+

>mRNA_Ecto-sp8_S_contig106803.1053.1 ID=mRNA_Ecto-sp8_S_contig106803.1053.1|Name=mRNA_Ecto-sp8_S_contig106803.1053.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106803:295..486+ (Ectocarpus species8 EcLAC_412)
AAGAAGAAGGTGAGGGTCCGCGCGGTAACGGAACTCGAGCGCGTGGTCTT
CCTGTCGCGGGAGCGCATCTTGGTCCTCGCCTGCCCGTCCGGGCCCACGA
GCCCGGGGCTCGTGAAATCGAACCACCACCTTACCGAGCTGCAGAAGATG
ACCTTCATGAGAAGAGACCCGTCGCTGGTGACCCTGCACTAC
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