mRNA_Ecto-sp8_S_contig106801.1052.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106801.1052.1
Unique NamemRNA_Ecto-sp8_S_contig106801.1052.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106801.1052.1 vs. uniprot
Match: D7FZ77_ECTSI (Inosine triphosphate pyrophosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ77_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.850e-24
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 LSVRLLNWVEGPIMYGSEVSPELMEKTGAYLGRMQVELDNFYDKSLLRGHTW 156
            LSVRLL WVEGP+M  SEV+PELMEKTGAYLGRMQVELDNFYDKSLLRGHTW
Sbjct:  143 LSVRLLKWVEGPMMKSSEVTPELMEKTGAYLGRMQVELDNFYDKSLLRGHTW 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106801.1052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ77_ECTSI5.850e-2490.38Inosine triphosphate pyrophosphatase n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106801contigEcto-sp8_S_contig106801:280..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score102.8
Seed ortholog evalue4.9e-20
Seed eggNOG ortholog2880.D7FZ77
Model size159
KEGG rclassRC00002
KEGG koko:K01519
KEGG ReactionR00426,R00720,R01855,R02100,R02720,R03531,R08243
KEGG Pathwayko00230,ko00983,ko01100,map00230,map00983,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576
Exons1
EggNOG free text desc.NADH pyrophosphatase activity
EggNOG OGsCOG0127@1,KOG3222@2759
Cds size159
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143164.1750698-CDS-Ecto-sp8_S_contig106801:279..4381681143164.1750698-CDS-Ecto-sp8_S_contig106801:279..438Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106801 280..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106801.1052.1prot_Ecto-sp8_S_contig106801.1052.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106801 280..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106801.1052.1

>prot_Ecto-sp8_S_contig106801.1052.1 ID=prot_Ecto-sp8_S_contig106801.1052.1|Name=mRNA_Ecto-sp8_S_contig106801.1052.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=53bp
LSVRLLNWVEGPIMYGSEVSPELMEKTGAYLGRMQVELDNFYDKSLLRGH
TW*
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mRNA from alignment at Ecto-sp8_S_contig106801:280..438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106801.1052.1 ID=mRNA_Ecto-sp8_S_contig106801.1052.1|Name=mRNA_Ecto-sp8_S_contig106801.1052.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106801:280..438- (Ectocarpus species8 EcLAC_412)
TTGTCAGTGCGGCTGCTGAACTGGGTGGAAGGGCCCATAATGTACGGCAG
CGAGGTGTCCCCGGAGCTCATGGAGAAGACCGGCGCCTACCTGGGCCGGA
TGCAGGTGGAGCTCGACAACTTTTACGACAAGTCTCTCCTCAGGGGGCAT
ACGTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106801:280..438-

>mRNA_Ecto-sp8_S_contig106801.1052.1 ID=mRNA_Ecto-sp8_S_contig106801.1052.1|Name=mRNA_Ecto-sp8_S_contig106801.1052.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106801:280..438- (Ectocarpus species8 EcLAC_412)
TTGTCAGTGCGGCTGCTGAACTGGGTGGAAGGGCCCATAATGTACGGCAG
CGAGGTGTCCCCGGAGCTCATGGAGAAGACCGGCGCCTACCTGGGCCGGA
TGCAGGTGGAGCTCGACAACTTTTACGACAAGTCTCTCCTCAGGGGGCAT
ACGTGGTGA
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