mRNA_Ecto-sp8_S_contig106765.1047.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106765.1047.1
Unique NamemRNA_Ecto-sp8_S_contig106765.1047.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: A0A0U2UPE7_9MAXI (60S ribosomal protein L30 n=5 Tax=Calanoida TaxID=6833 RepID=A0A0U2UPE7_9MAXI)

HSP 1 Score: 211 bits (536), Expect = 8.630e-69
Identity = 102/111 (91.89%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    4 VAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMPGAQ 336
            +A KK KK+NESIN+RLALVMKSGKYCLGY+QTLKTLRNGK+KLVIIA+NTPPLRKSEIEYYAMLAKTGVHHYTG+NNELGTACGKYFRVCTLSITDPGDSDIIRTMPGAQ
Sbjct:    1 MAPKKSKKTNESINSRLALVMKSGKYCLGYRQTLKTLRNGKAKLVIIASNTPPLRKSEIEYYAMLAKTGVHHYTGDNNELGTACGKYFRVCTLSITDPGDSDIIRTMPGAQ 111
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: A0A1W4X837_AGRPL (60S ribosomal protein L30 n=23 Tax=cellular organisms TaxID=131567 RepID=A0A1W4X837_AGRPL)

HSP 1 Score: 203 bits (517), Expect = 6.820e-66
Identity = 103/115 (89.57%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:    1 MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMP---GAQ 336
            MVAAKK KK+ ESIN+RLALVMKSGKYCLGYKQTLKTLR GK+KLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNN ELGTACGKYFRVC +SITDPGDSDIIRTMP   GAQ
Sbjct:    1 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNVELGTACGKYFRVCVMSITDPGDSDIIRTMPTGDGAQ 115
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: UPI001D06F612 (60S ribosomal protein L30 n=2 Tax=Endopterygota TaxID=33392 RepID=UPI001D06F612)

HSP 1 Score: 203 bits (516), Expect = 1.030e-65
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = 1 
Query:    1 MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMP 327
            MVA KK KK+ ESIN+RLALVMKSGKYCLGYKQTLKTLR GK+KL+IIANNTPPLRKSEIEYYAMLAKTGVHHYTGNN ELGTACGKYFRVCT+SITDPGDSDIIRTMP
Sbjct:    1 MVAQKKQKKAMESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLIIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTMSITDPGDSDIIRTMP 109
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: R9TFU5_ACAPC (60S ribosomal protein L30 n=2 Tax=Acartia pacifica TaxID=335913 RepID=R9TFU5_ACAPC)

HSP 1 Score: 202 bits (515), Expect = 1.380e-65
Identity = 98/111 (88.29%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMPGA 333
            M + K +KKSNESINARLALVMKSGK+CLGYKQTLKTLRNGKSKLVIIANNTPPLRK EIEYYAMLAKTGVHHY G+NN+LGTACGKYFRVCTLSITDPGD DIIRT+PG+
Sbjct:    1 MPSKKNVKKSNESINARLALVMKSGKFCLGYKQTLKTLRNGKSKLVIIANNTPPLRKFEIEYYAMLAKTGVHHYVGDNNDLGTACGKYFRVCTLSITDPGDFDIIRTLPGS 111
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: A0A0U2KD56_ACAPC (60S ribosomal protein L30 n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2KD56_ACAPC)

HSP 1 Score: 201 bits (512), Expect = 4.070e-65
Identity = 101/112 (90.18%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:    1 MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMPGAQ 336
            M A KK+KKSNESINARLALVMKSGKY LGYKQTLKTLR G SKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTG+NNELGTACGKYFRVCTLSITD GD D IR+MPGAQ
Sbjct:    1 MGAQKKVKKSNESINARLALVMKSGKYVLGYKQTLKTLRKGTSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGDNNELGTACGKYFRVCTLSITDAGDFDTIRSMPGAQ 112
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: A0A023EF46_AEDAL (60S ribosomal protein L30 n=22 Tax=Culicomorpha TaxID=43786 RepID=A0A023EF46_AEDAL)

HSP 1 Score: 198 bits (503), Expect = 9.600e-64
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMPGAQ 336
            MV AKK KK+ ESINARLALVMKSGKYCLGYKQTLKTLR GK+KL+IIANNTP LRKSEIEYYAMLAKTGVHHY GNN ELGTACGKYFRVCTLSITD GDSDIIRT+P AQ
Sbjct:    1 MVTAKKQKKALESINARLALVMKSGKYCLGYKQTLKTLRQGKAKLIIIANNTPHLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGKYFRVCTLSITDAGDSDIIRTLPEAQ 112
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: A0A7G3AA69_LUTLO (60S ribosomal protein L30 n=3 Tax=Endopterygota TaxID=33392 RepID=A0A7G3AA69_LUTLO)

HSP 1 Score: 196 bits (498), Expect = 5.210e-63
Identity = 96/112 (85.71%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMPGAQ 336
            MV  KK KK+ ESINARLALVMKSGKYCLGYKQTLKTLR GK+KL+IIANNTPPLRKSEIEYYAMLAKTGVHHY+GNN ELGTACG+Y+RVCTLSITD GDSDIIRT+P  Q
Sbjct:    1 MVTQKKQKKALESINARLALVMKSGKYCLGYKQTLKTLRQGKAKLIIIANNTPPLRKSEIEYYAMLAKTGVHHYSGNNIELGTACGRYYRVCTLSITDAGDSDIIRTLPETQ 112
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: A0A7R9P1X7_9NEOP (60S ribosomal protein L30 n=8 Tax=Arthropoda TaxID=6656 RepID=A0A7R9P1X7_9NEOP)

HSP 1 Score: 196 bits (497), Expect = 7.400e-63
Identity = 97/109 (88.99%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    1 MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMP 327
            MVA KK KK+ ESIN+RLALVMKSGK+ LGYKQTLKTLR GK+KLVIIANNTPPLRKSEIEYYAMLAKTGVHHY+GNN ELGTACGKYFRVCTLSITDPGDSDIIR+MP
Sbjct:    1 MVAQKKQKKAMESINSRLALVMKSGKFVLGYKQTLKTLRQGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYFRVCTLSITDPGDSDIIRSMP 109
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: A0A1Y1LHY6_PHOPY (60S ribosomal protein L30 n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LHY6_PHOPY)

HSP 1 Score: 196 bits (497), Expect = 8.150e-63
Identity = 96/116 (82.76%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:    1 MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMPGAQPEAT 348
            MVA KK KK+ ESIN+RLALVMKSGKYCLGYKQTLKTLR GK+KLVIIANN+PPLRKSEIEYYAMLAKTGVHHY+GNN ELGTACGKYFR C +SITDPGDSDIIR+MP  +  A+
Sbjct:    1 MVAQKKQKKAIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIANNSPPLRKSEIEYYAMLAKTGVHHYSGNNVELGTACGKYFRTCVMSITDPGDSDIIRSMPTGEAAAS 116
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BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Match: A8U9W1_SIPNU (60S ribosomal protein L30 n=1 Tax=Sipunculus nudus TaxID=6446 RepID=A8U9W1_SIPNU)

HSP 1 Score: 196 bits (497), Expect = 8.150e-63
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 1 
Query:    1 MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPGDSDIIRTMPGAQPEA 345
            MVAAKK KKS ESIN+RL LVMKSGKY LGYKQTLKTLR GK+KLVIIANNTPPLRKSEIEYYAMLAKTGVHHY GNN ELGTACGK+FRV TLSITDPGDSDIIR+MP A  EA
Sbjct:    1 MVAAKKAKKSVESINSRLQLVMKSGKYVLGYKQTLKTLRQGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYKGNNIELGTACGKFFRVTTLSITDPGDSDIIRSMPSATGEA 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106765.1047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2UPE7_9MAXI8.630e-6991.8960S ribosomal protein L30 n=5 Tax=Calanoida TaxID=... [more]
A0A1W4X837_AGRPL6.820e-6689.5760S ribosomal protein L30 n=23 Tax=cellular organi... [more]
UPI001D06F6121.030e-6590.8360S ribosomal protein L30 n=2 Tax=Endopterygota Ta... [more]
R9TFU5_ACAPC1.380e-6588.2960S ribosomal protein L30 n=2 Tax=Acartia pacifica... [more]
A0A0U2KD56_ACAPC4.070e-6590.1860S ribosomal protein L30 n=1 Tax=Acartia pacifica... [more]
A0A023EF46_AEDAL9.600e-6488.3960S ribosomal protein L30 n=22 Tax=Culicomorpha Ta... [more]
A0A7G3AA69_LUTLO5.210e-6385.7160S ribosomal protein L30 n=3 Tax=Endopterygota Ta... [more]
A0A7R9P1X7_9NEOP7.400e-6388.9960S ribosomal protein L30 n=8 Tax=Arthropoda TaxID... [more]
A0A1Y1LHY6_PHOPY8.150e-6382.7660S ribosomal protein L30 n=1 Tax=Photinus pyralis... [more]
A8U9W1_SIPNU8.150e-6386.9660S ribosomal protein L30 n=1 Tax=Sipunculus nudus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106765contigEcto-sp8_S_contig106765:106..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score199.1
Seed ortholog evalue1.1e-48
Seed eggNOG ortholog7070.TC001524-PA
Preferred nameRpL30
Model size354
KEGG koko:K02908
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007422,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048731,GO:0048856,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.ribosomal protein
EggNOG OGs3A3EW@33154,3BQ9D@33208,3D76A@33213,3SMQK@50557,41ZBK@6656,COG1911@1,KOG2988@2759
Cds size354
COG Functional cat.J
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143163.8798647-CDS-Ecto-sp8_S_contig106765:105..4591681143163.8798647-CDS-Ecto-sp8_S_contig106765:105..459Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106765 106..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106765.1047.1prot_Ecto-sp8_S_contig106765.1047.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106765 106..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106765.1047.1

>prot_Ecto-sp8_S_contig106765.1047.1 ID=prot_Ecto-sp8_S_contig106765.1047.1|Name=mRNA_Ecto-sp8_S_contig106765.1047.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=118bp
MVAAKKLKKSNESINARLALVMKSGKYCLGYKQTLKTLRNGKSKLVIIAN
NTPPLRKSEIEYYAMLAKTGVHHYTGNNNELGTACGKYFRVCTLSITDPG
DSDIIRTMPGAQPEATA*
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mRNA from alignment at Ecto-sp8_S_contig106765:106..459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106765.1047.1 ID=mRNA_Ecto-sp8_S_contig106765.1047.1|Name=mRNA_Ecto-sp8_S_contig106765.1047.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106765:106..459+ (Ectocarpus species8 EcLAC_412)
ATGGTTGCCGCAAAGAAACTGAAGAAGTCCAATGAGTCCATCAACGCCAG
GCTTGCCTTGGTTATGAAGTCCGGCAAGTACTGCTTAGGCTACAAGCAGA
CCTTGAAGACCCTGAGGAACGGGAAGAGCAAGCTGGTTATCATCGCCAAC
AACACCCCTCCCCTCCGCAAGTCTGAGATCGAGTACTACGCCATGTTGGC
CAAGACCGGGGTCCACCACTACACCGGGAACAACAACGAGCTCGGGACCG
CGTGTGGAAAATATTTCCGTGTCTGTACTTTGTCCATCACTGACCCAGGA
GATTCTGATATTATCAGAACAATGCCAGGGGCTCAGCCCGAGGCCACTGC
TTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106765:106..459+

>mRNA_Ecto-sp8_S_contig106765.1047.1 ID=mRNA_Ecto-sp8_S_contig106765.1047.1|Name=mRNA_Ecto-sp8_S_contig106765.1047.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106765:106..459+ (Ectocarpus species8 EcLAC_412)
ATGGTTGCCGCAAAGAAACTGAAGAAGTCCAATGAGTCCATCAACGCCAG
GCTTGCCTTGGTTATGAAGTCCGGCAAGTACTGCTTAGGCTACAAGCAGA
CCTTGAAGACCCTGAGGAACGGGAAGAGCAAGCTGGTTATCATCGCCAAC
AACACCCCTCCCCTCCGCAAGTCTGAGATCGAGTACTACGCCATGTTGGC
CAAGACCGGGGTCCACCACTACACCGGGAACAACAACGAGCTCGGGACCG
CGTGTGGAAAATATTTCCGTGTCTGTACTTTGTCCATCACTGACCCAGGA
GATTCTGATATTATCAGAACAATGCCAGGGGCTCAGCCCGAGGCCACTGC
TTAA
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